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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 306 |
| AccB1I | GGYRCC | 1 cut(s) | 261 |
| AccIII | TCCGGA | 1 cut(s) | 226 |
| AciI | CCGC | 2 cut(s) | 340, 567 |
| AclWI | GGATC | 2 cut(s) | 128, 198 |
| AcoI | YGGCCR | 1 cut(s) | 412 |
| AcsI | RAATTY | 1 cut(s) | 5 |
| AfaI | GTAC | 1 cut(s) | 534 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 257 |
| AgsI | TTSAA | 1 cut(s) | 463 |
| AluBI | AGCT | 4 cut(s) | 139, 149, 220, 548 |
| AluI | AGCT | 4 cut(s) | 139, 149, 220, 548 |
| Alw21I | GWGCWC | 2 cut(s) | 141, 550 |
| AlwI | GGATC | 2 cut(s) | 128, 198 |
| Aor13HI | TCCGGA | 1 cut(s) | 226 |
| AoxI | GGCC | 1 cut(s) | 412 |
| ApoI | RAATTY | 1 cut(s) | 5 |
| AspLEI | GCGC | 1 cut(s) | 469 |
| AspS9I | GGNCC | 1 cut(s) | 308 |
| AsuHPI | GGTGA | 1 cut(s) | 556 |
| AvaII | GGWCC | 1 cut(s) | 308 |
| BaeGI | GKGCMC | 1 cut(s) | 264 |
| BalI | TGGCCA | 1 cut(s) | 414 |
| BanI | GGYRCC | 1 cut(s) | 261 |
| BanII | GRGCYC | 2 cut(s) | 141, 550 |
| BbsI | GAAGAC | 1 cut(s) | 53 |
| Bbv12I | GWGCWC | 2 cut(s) | 141, 550 |
| BccI | CCATC | 3 cut(s) | 68, 74, 453 |
| BclI | TGATCA | 1 cut(s) | 523 |
| BfaI | CTAG | 1 cut(s) | 635 |
| BfoI | RGCGCY | 1 cut(s) | 470 |
| Bme18I | GGWCC | 1 cut(s) | 308 |
| BmgT120I | GGNCC | 1 cut(s) | 308 |
| BmiI | GGNNCC | 3 cut(s) | 263, 362, 427 |
| BpiI | GAAGAC | 1 cut(s) | 53 |
| BsaJI | CCNNGG | 1 cut(s) | 207 |
| BsaWI | WCCGGW | 1 cut(s) | 226 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 257 |
| Bse3DI | GCAATG | 2 cut(s) | 39, 409 |
| BseAI | TCCGGA | 1 cut(s) | 226 |
| BseDI | CCNNGG | 1 cut(s) | 207 |
| BseGI | GGATG | 2 cut(s) | 60, 177 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 257 |
| BseMI | GCAATG | 2 cut(s) | 39, 409 |
| BseSI | GKGCMC | 1 cut(s) | 264 |
| BshFI | GGCC | 1 cut(s) | 414 |
| BshNI | GGYRCC | 1 cut(s) | 261 |
| BsiHKAI | GWGCWC | 2 cut(s) | 141, 550 |
| BsiSI | CCGG | 1 cut(s) | 227 |
| BslFI | GGGAC | 1 cut(s) | 302 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 257 |
| BsmFI | GGGAC | 1 cut(s) | 302 |
| BsnI | GGCC | 1 cut(s) | 414 |
| Bsp1286I | GDGCHC | 3 cut(s) | 141, 264, 550 |
| Bsp13I | TCCGGA | 1 cut(s) | 226 |
| Bsp143I | GATC | 6 cut(s) | 21, 120, 203, 523, 619, 631 |
| BspACI | CCGC | 2 cut(s) | 340, 567 |
| BspANI | GGCC | 1 cut(s) | 414 |
| BspEI | TCCGGA | 1 cut(s) | 226 |
| BspHI | TCATGA | 2 cut(s) | 133, 550 |
| BspLI | GGNNCC | 3 cut(s) | 263, 362, 427 |
| BspPI | GGATC | 2 cut(s) | 128, 198 |
| BspT107I | GGYRCC | 1 cut(s) | 261 |
| BsrDI | GCAATG | 2 cut(s) | 39, 409 |
| BssECI | CCNNGG | 1 cut(s) | 207 |
| BssMI | GATC | 6 cut(s) | 21, 120, 203, 523, 619, 631 |
| Bst6I | CTCTTC | 1 cut(s) | 361 |
| BstDEI | CTNAG | 2 cut(s) | 87, 284 |
| BstDSI | CCRYGG | 1 cut(s) | 207 |
| BstEII | GGTNACC | 1 cut(s) | 335 |
| BstF5I | GGATG | 2 cut(s) | 60, 177 |
| BstH2I | RGCGCY | 1 cut(s) | 470 |
| BstHHI | GCGC | 1 cut(s) | 469 |
| BstKTI | GATC | 6 cut(s) | 24, 123, 206, 526, 622, 634 |
| BstMBI | GATC | 6 cut(s) | 21, 120, 203, 523, 619, 631 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 268, 464, 575, 596 |
| BstPI | GGTNACC | 1 cut(s) | 335 |
| BstSLI | GKGCMC | 1 cut(s) | 264 |
| BstV2I | GAAGAC | 1 cut(s) | 53 |
| BstX2I | RGATCY | 1 cut(s) | 203 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 422 |
| BstYI | RGATCY | 1 cut(s) | 203 |
| BsuRI | GGCC | 1 cut(s) | 414 |
| BtgI | CCRYGG | 1 cut(s) | 207 |
| BtsCI | GGATG | 2 cut(s) | 60, 177 |
| CciI | TCATGA | 2 cut(s) | 133, 550 |
| CfoI | GCGC | 1 cut(s) | 469 |
| Cfr13I | GGNCC | 1 cut(s) | 308 |
| Csp6I | GTAC | 1 cut(s) | 533 |
| CviAII | CATG | 4 cut(s) | 134, 170, 416, 551 |
| CviJI | RGCY | 7 cut(s) | 139, 149, 220, 414, 426, 444, 548 |
| CviKI_1 | RGCY | 7 cut(s) | 139, 149, 220, 414, 426, 444, 548 |
| CviQI | GTAC | 1 cut(s) | 533 |
| DdeI | CTNAG | 2 cut(s) | 87, 284 |
| DpnI | GATC | 6 cut(s) | 23, 122, 205, 525, 621, 633 |
| DpnII | GATC | 6 cut(s) | 21, 120, 203, 523, 619, 631 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 306 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 306 |
| EaeI | YGGCCR | 1 cut(s) | 412 |
| Eam1104I | CTCTTC | 1 cut(s) | 361 |
| EarI | CTCTTC | 1 cut(s) | 361 |
| Ecl136II | GAGCTC | 2 cut(s) | 139, 548 |
| Eco24I | GRGCYC | 2 cut(s) | 141, 550 |
| Eco47I | GGWCC | 1 cut(s) | 308 |
| Eco53kI | GAGCTC | 2 cut(s) | 139, 548 |
| Eco91I | GGTNACC | 1 cut(s) | 335 |
| EcoICRI | GAGCTC | 2 cut(s) | 139, 548 |
| EcoO65I | GGTNACC | 1 cut(s) | 335 |
| EcoRI | GAATTC | 1 cut(s) | 5 |
| EcoT38I | GRGCYC | 2 cut(s) | 141, 550 |
| FaeI | CATG | 4 cut(s) | 137, 173, 419, 554 |
| FaqI | GGGAC | 1 cut(s) | 302 |
| FatI | CATG | 4 cut(s) | 133, 169, 415, 550 |
| FbaI | TGATCA | 1 cut(s) | 523 |
| FokI | GGATG | 2 cut(s) | 47, 164 |
| FriOI | GRGCYC | 2 cut(s) | 141, 550 |
| FspBI | CTAG | 1 cut(s) | 635 |
| GlaI | GCGC | 1 cut(s) | 468 |
| HaeII | RGCGCY | 1 cut(s) | 470 |
| HaeIII | GGCC | 1 cut(s) | 414 |
| HapII | CCGG | 1 cut(s) | 227 |
| HhaI | GCGC | 1 cut(s) | 469 |
| Hin1II | CATG | 4 cut(s) | 137, 173, 419, 554 |
| Hin6I | GCGC | 1 cut(s) | 467 |
| HinP1I | GCGC | 1 cut(s) | 467 |
| HinfI | GANTC | 2 cut(s) | 49, 230 |
| HpaII | CCGG | 1 cut(s) | 227 |
| HphI | GGTGA | 1 cut(s) | 556 |
| Hpy166II | GTNNAC | 2 cut(s) | 374, 535 |
| Hpy188III | TCNNGA | 7 cut(s) | 134, 201, 227, 507, 551, 623, 635 |
| Hpy8I | GTNNAC | 2 cut(s) | 374, 535 |
| HpyAV | CCTTC | 2 cut(s) | 111, 326 |
| HpyCH4IV | ACGT | 2 cut(s) | 301, 376 |
| HpyCH4V | TGCA | 3 cut(s) | 32, 74, 113 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 268, 464, 575, 596 |
| HpyF3I | CTNAG | 2 cut(s) | 87, 284 |
| HpySE526I | ACGT | 2 cut(s) | 301, 376 |
| Hsp92II | CATG | 4 cut(s) | 137, 173, 419, 554 |
| HspAI | GCGC | 1 cut(s) | 467 |
| Kpn2I | TCCGGA | 1 cut(s) | 226 |
| Ksp22I | TGATCA | 1 cut(s) | 523 |
| Kzo9I | GATC | 6 cut(s) | 21, 120, 203, 523, 619, 631 |
| LmnI | GCTCC | 2 cut(s) | 146, 431 |
| LpnPI | CCDG | 3 cut(s) | 240, 291, 396 |
| MaeI | CTAG | 1 cut(s) | 635 |
| MaeII | ACGT | 2 cut(s) | 301, 376 |
| MaeIII | GTNAC | 3 cut(s) | 106, 335, 562 |
| MalI | GATC | 6 cut(s) | 23, 122, 205, 525, 621, 633 |
| MboI | GATC | 6 cut(s) | 21, 120, 203, 523, 619, 631 |
| MboII | GAAGA | 6 cut(s) | 58, 199, 378, 566, 629, 638 |
| MflI | RGATCY | 1 cut(s) | 203 |
| MhlI | GDGCHC | 3 cut(s) | 141, 264, 550 |
| MlsI | TGGCCA | 1 cut(s) | 414 |
| MluCI | AATT | 5 cut(s) | 5, 99, 196, 235, 451 |
| MluNI | TGGCCA | 1 cut(s) | 414 |
| MlyI | GAGTC | 1 cut(s) | 43 |
| MnlI | CCTC | 5 cut(s) | 251, 362, 392, 418, 480 |
| Mox20I | TGGCCA | 1 cut(s) | 414 |
| MroI | TCCGGA | 1 cut(s) | 226 |
| MscI | TGGCCA | 1 cut(s) | 414 |
| MslI | CAYNNNNRTG | 2 cut(s) | 182, 420 |
| Msp20I | TGGCCA | 1 cut(s) | 414 |
| MspI | CCGG | 1 cut(s) | 227 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 268, 464, 575, 596 |
| NdeII | GATC | 6 cut(s) | 21, 120, 203, 523, 619, 631 |
| NlaIII | CATG | 4 cut(s) | 137, 173, 419, 554 |
| NlaIV | GGNNCC | 3 cut(s) | 263, 362, 427 |
| NmuCI | GTSAC | 1 cut(s) | 562 |
| PagI | TCATGA | 2 cut(s) | 133, 550 |
| PfeI | GAWTC | 1 cut(s) | 230 |
| PleI | GAGTC | 1 cut(s) | 43 |
| PpsI | GAGTC | 1 cut(s) | 43 |
| Psp124BI | GAGCTC | 2 cut(s) | 141, 550 |
| PspEI | GGTNACC | 1 cut(s) | 335 |
| PspN4I | GGNNCC | 3 cut(s) | 263, 362, 427 |
| PspPI | GGNCC | 1 cut(s) | 308 |
| PsuI | RGATCY | 1 cut(s) | 203 |
| RsaI | GTAC | 1 cut(s) | 534 |
| RsaNI | GTAC | 1 cut(s) | 533 |
| RseI | CAYNNNNRTG | 2 cut(s) | 182, 420 |
| SacI | GAGCTC | 2 cut(s) | 141, 550 |
| Sau3AI | GATC | 6 cut(s) | 21, 120, 203, 523, 619, 631 |
| Sau96I | GGNCC | 1 cut(s) | 308 |
| SchI | GAGTC | 1 cut(s) | 43 |
| SduI | GDGCHC | 3 cut(s) | 141, 264, 550 |
| SetI | ASST | 9 cut(s) | 131, 141, 151, 222, 304, 337, 373, 379, 550 |
| SinI | GGWCC | 1 cut(s) | 308 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 182, 420 |
| Sse9I | AATT | 5 cut(s) | 5, 99, 196, 235, 451 |
| SsiI | CCGC | 2 cut(s) | 340, 567 |
| SspMI | CTAG | 1 cut(s) | 635 |
| SstI | GAGCTC | 2 cut(s) | 141, 550 |
| TaiI | ACGT | 2 cut(s) | 304, 379 |
| TaqI | TCGA | 3 cut(s) | 97, 200, 508 |
| TasI | AATT | 5 cut(s) | 5, 99, 196, 235, 451 |
| TfiI | GAWTC | 1 cut(s) | 230 |
| TseFI | GTSAC | 1 cut(s) | 562 |
| Tsp45I | GTSAC | 1 cut(s) | 562 |
| TspDTI | ATGAA | 3 cut(s) | 122, 167, 567 |
| TspGWI | ACGGA | 2 cut(s) | 196, 373 |
| VpaK11BI | GGWCC | 1 cut(s) | 308 |
| XapI | RAATTY | 1 cut(s) | 5 |
| XbaI | TCTAGA | 1 cut(s) | 634 |
| XspI | CTAG | 1 cut(s) | 635 |