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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 528 |
| AarI | CACCTGC | 1 cut(s) | 53 |
| Acc16I | TGCGCA | 1 cut(s) | 92 |
| Acc36I | ACCTGC | 2 cut(s) | 8, 53 |
| AccII | CGCG | 1 cut(s) | 675 |
| AccIII | TCCGGA | 1 cut(s) | 655 |
| AciI | CCGC | 4 cut(s) | 38, 97, 143, 496 |
| AclI | AACGTT | 1 cut(s) | 447 |
| AcuI | CTGAAG | 1 cut(s) | 227 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 116, 397, 686 |
| AflII | CTTAAG | 1 cut(s) | 245 |
| AgeI | ACCGGT | 1 cut(s) | 178 |
| AgsI | TTSAA | 3 cut(s) | 266, 323, 511 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 281, 313 |
| AluBI | AGCT | 5 cut(s) | 311, 335, 415, 539, 568 |
| AluI | AGCT | 5 cut(s) | 311, 335, 415, 539, 568 |
| Alw21I | GWGCWC | 2 cut(s) | 297, 570 |
| Alw26I | GTCTC | 2 cut(s) | 76, 169 |
| Aor13HI | TCCGGA | 1 cut(s) | 655 |
| AoxI | GGCC | 3 cut(s) | 131, 152, 162 |
| ApeKI | GCWGC | 4 cut(s) | 14, 31, 88, 433 |
| AsiGI | ACCGGT | 1 cut(s) | 178 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 540 |
| AspLEI | GCGC | 4 cut(s) | 93, 237, 376, 677 |
| AspS9I | GGNCC | 3 cut(s) | 107, 152, 223 |
| AsuHPI | GGTGA | 2 cut(s) | 77, 193 |
| AvaII | GGWCC | 2 cut(s) | 107, 223 |
| AxyI | CCTNAGG | 1 cut(s) | 681 |
| BanII | GRGCYC | 1 cut(s) | 570 |
| BauI | CACGAG | 1 cut(s) | 635 |
| BbsI | GAAGAC | 1 cut(s) | 408 |
| Bbv12I | GWGCWC | 2 cut(s) | 297, 570 |
| BbvI | GCAGC | 3 cut(s) | 18, 75, 445 |
| BccI | CCATC | 5 cut(s) | 142, 213, 248, 278, 477 |
| BcoDI | GTCTC | 2 cut(s) | 76, 169 |
| BfaI | CTAG | 2 cut(s) | 282, 630 |
| BfmI | CTRYAG | 2 cut(s) | 15, 32 |
| BfrI | CTTAAG | 1 cut(s) | 245 |
| BfuAI | ACCTGC | 2 cut(s) | 8, 53 |
| BglII | AGATCT | 1 cut(s) | 5 |
| BisI | GCNGC | 4 cut(s) | 15, 32, 89, 434 |
| BlsI | GCNGC | 4 cut(s) | 16, 33, 90, 435 |
| Bme18I | GGWCC | 2 cut(s) | 107, 223 |
| BmgT120I | GGNCC | 3 cut(s) | 107, 152, 223 |
| BmiI | GGNNCC | 5 cut(s) | 108, 153, 224, 577, 643 |
| BmsI | GCATC | 1 cut(s) | 361 |
| BpiI | GAAGAC | 1 cut(s) | 408 |
| BpuEI | CTTGAG | 1 cut(s) | 449 |
| BsaI | GGTCTC | 2 cut(s) | 76, 169 |
| BsaWI | WCCGGW | 4 cut(s) | 48, 109, 178, 655 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 49, 79, 281, 311 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 116, 397, 686 |
| Bse118I | RCCGGY | 2 cut(s) | 154, 178 |
| Bse21I | CCTNAGG | 1 cut(s) | 681 |
| BseAI | TCCGGA | 1 cut(s) | 655 |
| BseGI | GGATG | 3 cut(s) | 153, 224, 270 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 116, 397, 686 |
| BseMII | CTCAG | 1 cut(s) | 164 |
| BseRI | GAGGAG | 1 cut(s) | 70 |
| BseXI | GCAGC | 3 cut(s) | 18, 75, 445 |
| BseYI | CCCAGC | 1 cut(s) | 115 |
| Bsh1236I | CGCG | 1 cut(s) | 675 |
| BshFI | GGCC | 3 cut(s) | 133, 154, 164 |
| BshTI | ACCGGT | 1 cut(s) | 178 |
| BsiHKAI | GWGCWC | 2 cut(s) | 297, 570 |
| BsiSI | CCGG | 5 cut(s) | 49, 110, 155, 179, 656 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 116, 397, 686 |
| BsmAI | GTCTC | 2 cut(s) | 76, 169 |
| BsnI | GGCC | 3 cut(s) | 133, 154, 164 |
| Bso31I | GGTCTC | 2 cut(s) | 76, 169 |
| Bsp1286I | GDGCHC | 2 cut(s) | 297, 570 |
| Bsp13I | TCCGGA | 1 cut(s) | 655 |
| Bsp143I | GATC | 2 cut(s) | 5, 127 |
| BspACI | CCGC | 4 cut(s) | 38, 97, 143, 496 |
| BspANI | GGCC | 3 cut(s) | 133, 154, 164 |
| BspCNI | CTCAG | 1 cut(s) | 165 |
| BspEI | TCCGGA | 1 cut(s) | 655 |
| BspFNI | CGCG | 1 cut(s) | 675 |
| BspHI | TCATGA | 2 cut(s) | 351, 562 |
| BspLI | GGNNCC | 5 cut(s) | 108, 153, 224, 577, 643 |
| BspMAI | CTGCAG | 2 cut(s) | 19, 36 |
| BspMI | ACCTGC | 2 cut(s) | 8, 53 |
| BspQI | GCTCTTC | 1 cut(s) | 546 |
| BspTI | CTTAAG | 1 cut(s) | 245 |
| BspTNI | GGTCTC | 2 cut(s) | 76, 169 |
| BsrFI | RCCGGY | 2 cut(s) | 154, 178 |
| BssAI | RCCGGY | 2 cut(s) | 154, 178 |
| BssMI | GATC | 2 cut(s) | 5, 127 |
| BssSI | CACGAG | 1 cut(s) | 635 |
| Bst2BI | CACGAG | 1 cut(s) | 635 |
| Bst6I | CTCTTC | 1 cut(s) | 546 |
| BstAFI | CTTAAG | 1 cut(s) | 245 |
| BstC8I | GCNNGC | 4 cut(s) | 36, 86, 95, 309 |
| BstDEI | CTNAG | 3 cut(s) | 2, 173, 681 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 395, 684 |
| BstF5I | GGATG | 3 cut(s) | 153, 224, 270 |
| BstFNI | CGCG | 1 cut(s) | 675 |
| BstHHI | GCGC | 4 cut(s) | 93, 237, 376, 677 |
| BstKTI | GATC | 2 cut(s) | 8, 130 |
| BstMAI | GTCTC | 2 cut(s) | 76, 169 |
| BstMBI | GATC | 2 cut(s) | 5, 127 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 90, 94, 323, 332 |
| BstSFI | CTRYAG | 2 cut(s) | 15, 32 |
| BstUI | CGCG | 1 cut(s) | 675 |
| BstV1I | GCAGC | 3 cut(s) | 18, 75, 445 |
| BstV2I | GAAGAC | 1 cut(s) | 408 |
| BstX2I | RGATCY | 1 cut(s) | 5 |
| BstYI | RGATCY | 1 cut(s) | 5 |
| Bsu36I | CCTNAGG | 1 cut(s) | 681 |
| BsuRI | GGCC | 3 cut(s) | 133, 154, 164 |
| BtsCI | GGATG | 3 cut(s) | 153, 224, 270 |
| BtsI | GCAGTG | 1 cut(s) | 130 |
| BtsIMutI | CAGTG | 1 cut(s) | 130 |
| BveI | ACCTGC | 2 cut(s) | 8, 53 |
| Cac8I | GCNNGC | 4 cut(s) | 36, 86, 95, 309 |
| CciI | TCATGA | 2 cut(s) | 351, 562 |
| CfoI | GCGC | 4 cut(s) | 93, 237, 376, 677 |
| Cfr10I | RCCGGY | 2 cut(s) | 154, 178 |
| Cfr13I | GGNCC | 3 cut(s) | 107, 152, 223 |
| CspAI | ACCGGT | 1 cut(s) | 178 |
| CviAII | CATG | 4 cut(s) | 352, 364, 563, 580 |
| DdeI | CTNAG | 3 cut(s) | 2, 173, 681 |
| DpnI | GATC | 2 cut(s) | 7, 129 |
| DpnII | GATC | 2 cut(s) | 5, 127 |
| Eam1104I | CTCTTC | 1 cut(s) | 546 |
| EarI | CTCTTC | 1 cut(s) | 546 |
| Ecl136II | GAGCTC | 1 cut(s) | 568 |
| Eco24I | GRGCYC | 1 cut(s) | 570 |
| Eco31I | GGTCTC | 2 cut(s) | 76, 169 |
| Eco47I | GGWCC | 2 cut(s) | 107, 223 |
| Eco53kI | GAGCTC | 1 cut(s) | 568 |
| Eco57I | CTGAAG | 1 cut(s) | 227 |
| Eco81I | CCTNAGG | 1 cut(s) | 681 |
| EcoICRI | GAGCTC | 1 cut(s) | 568 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 395, 684 |
| EcoT38I | GRGCYC | 1 cut(s) | 570 |
| FaeI | CATG | 4 cut(s) | 355, 367, 566, 583 |
| FaiI | YATR | 9 cut(s) | 344, 353, 365, 418, 489, 528, 564, 581, 624 |
| FatI | CATG | 4 cut(s) | 351, 363, 562, 579 |
| FauI | CCCGC | 2 cut(s) | 90, 136 |
| Fnu4HI | GCNGC | 4 cut(s) | 15, 32, 89, 434 |
| FokI | GGATG | 3 cut(s) | 160, 231, 257 |
| FriOI | GRGCYC | 1 cut(s) | 570 |
| Fsp4HI | GCNGC | 4 cut(s) | 15, 32, 89, 434 |
| FspBI | CTAG | 2 cut(s) | 282, 630 |
| FspI | TGCGCA | 1 cut(s) | 92 |
| GlaI | GCGC | 4 cut(s) | 92, 236, 375, 676 |
| GluI | GCNGC | 4 cut(s) | 15, 32, 89, 434 |
| GsaI | CCCAGC | 1 cut(s) | 119 |
| HaeIII | GGCC | 3 cut(s) | 133, 154, 164 |
| HapII | CCGG | 5 cut(s) | 49, 110, 155, 179, 656 |
| HhaI | GCGC | 4 cut(s) | 93, 237, 376, 677 |
| Hin1II | CATG | 4 cut(s) | 355, 367, 566, 583 |
| Hin6I | GCGC | 4 cut(s) | 91, 235, 374, 675 |
| HinP1I | GCGC | 4 cut(s) | 91, 235, 374, 675 |
| HinfI | GANTC | 3 cut(s) | 455, 633, 659 |
| HpaII | CCGG | 5 cut(s) | 49, 110, 155, 179, 656 |
| HphI | GGTGA | 2 cut(s) | 77, 193 |
| Hpy188I | TCNGA | 3 cut(s) | 24, 227, 288 |
| Hpy188III | TCNNGA | 6 cut(s) | 263, 352, 452, 467, 563, 656 |
| Hpy99I | CGWCG | 2 cut(s) | 549, 675 |
| HpyAV | CCTTC | 1 cut(s) | 202 |
| HpyCH4IV | ACGT | 4 cut(s) | 291, 447, 547, 585 |
| HpyCH4V | TGCA | 3 cut(s) | 17, 34, 123 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 90, 94, 323, 332 |
| HpyF3I | CTNAG | 3 cut(s) | 2, 173, 681 |
| HpySE526I | ACGT | 4 cut(s) | 291, 447, 547, 585 |
| Hsp92II | CATG | 4 cut(s) | 355, 367, 566, 583 |
| HspAI | GCGC | 4 cut(s) | 91, 235, 374, 675 |
| Kpn2I | TCCGGA | 1 cut(s) | 655 |
| Kzo9I | GATC | 2 cut(s) | 5, 127 |
| LguI | GCTCTTC | 1 cut(s) | 546 |
| LmnI | GCTCC | 2 cut(s) | 381, 575 |
| Lsp1109I | GCAGC | 3 cut(s) | 18, 75, 445 |
| LweI | GCATC | 1 cut(s) | 361 |
| MaeI | CTAG | 2 cut(s) | 282, 630 |
| MaeII | ACGT | 4 cut(s) | 291, 447, 547, 585 |
| MaeIII | GTNAC | 1 cut(s) | 452 |
| MalI | GATC | 2 cut(s) | 7, 129 |
| MboI | GATC | 2 cut(s) | 5, 127 |
| MboII | GAAGA | 3 cut(s) | 413, 533, 628 |
| MflI | RGATCY | 1 cut(s) | 5 |
| MhlI | GDGCHC | 2 cut(s) | 297, 570 |
| MluCI | AATT | 1 cut(s) | 345 |
| MlyI | GAGTC | 3 cut(s) | 449, 627, 668 |
| MnlI | CCTC | 8 cut(s) | 48, 61, 177, 188, 195, 391, 503, 680 |
| MroI | TCCGGA | 1 cut(s) | 655 |
| MroXI | GAANNNNTTC | 1 cut(s) | 540 |
| MseI | TTAA | 2 cut(s) | 246, 393 |
| MslI | CAYNNNNRTG | 2 cut(s) | 217, 366 |
| MspCI | CTTAAG | 1 cut(s) | 245 |
| MspI | CCGG | 5 cut(s) | 49, 110, 155, 179, 656 |
| MvnI | CGCG | 1 cut(s) | 675 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 90, 94, 323, 332 |
| NdeII | GATC | 2 cut(s) | 5, 127 |
| NlaIII | CATG | 4 cut(s) | 355, 367, 566, 583 |
| NlaIV | GGNNCC | 5 cut(s) | 108, 153, 224, 577, 643 |
| NmuCI | GTSAC | 1 cut(s) | 452 |
| NsbI | TGCGCA | 1 cut(s) | 92 |
| PagI | TCATGA | 2 cut(s) | 351, 562 |
| PaqCI | CACCTGC | 1 cut(s) | 53 |
| PciSI | GCTCTTC | 1 cut(s) | 546 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 297 |
| PdmI | GAANNNNTTC | 1 cut(s) | 540 |
| PinAI | ACCGGT | 1 cut(s) | 178 |
| PkrI | GCNGC | 4 cut(s) | 16, 33, 90, 435 |
| PleI | GAGTC | 3 cut(s) | 449, 627, 667 |
| PpsI | GAGTC | 3 cut(s) | 449, 627, 667 |
| PsiI | TTATAA | 1 cut(s) | 528 |
| Psp124BI | GAGCTC | 1 cut(s) | 570 |
| Psp1406I | AACGTT | 1 cut(s) | 447 |
| PspFI | CCCAGC | 1 cut(s) | 115 |
| PspN4I | GGNNCC | 5 cut(s) | 108, 153, 224, 577, 643 |
| PspPI | GGNCC | 3 cut(s) | 107, 152, 223 |
| PstI | CTGCAG | 2 cut(s) | 19, 36 |
| PsuI | RGATCY | 1 cut(s) | 5 |
| RseI | CAYNNNNRTG | 2 cut(s) | 217, 366 |
| SacI | GAGCTC | 1 cut(s) | 570 |
| SapI | GCTCTTC | 1 cut(s) | 546 |
| SaqAI | TTAA | 2 cut(s) | 246, 393 |
| SatI | GCNGC | 4 cut(s) | 15, 32, 89, 434 |
| Sau3AI | GATC | 2 cut(s) | 5, 127 |
| Sau96I | GGNCC | 3 cut(s) | 107, 152, 223 |
| SchI | GAGTC | 3 cut(s) | 449, 627, 668 |
| SduI | GDGCHC | 2 cut(s) | 297, 570 |
| SfaNI | GCATC | 1 cut(s) | 361 |
| SfcI | CTRYAG | 2 cut(s) | 15, 32 |
| SinI | GGWCC | 2 cut(s) | 107, 223 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 217, 366 |
| SmlI | CTYRAG | 2 cut(s) | 245, 428 |
| SmoI | CTYRAG | 2 cut(s) | 245, 428 |
| Sse9I | AATT | 1 cut(s) | 345 |
| SsiI | CCGC | 4 cut(s) | 38, 97, 143, 496 |
| SspMI | CTAG | 2 cut(s) | 282, 630 |
| SstI | GAGCTC | 1 cut(s) | 570 |
| TaiI | ACGT | 4 cut(s) | 294, 450, 550, 588 |
| TaqI | TCGA | 1 cut(s) | 544 |
| TasI | AATT | 1 cut(s) | 345 |
| Tru1I | TTAA | 2 cut(s) | 246, 393 |
| Tru9I | TTAA | 2 cut(s) | 246, 393 |
| TscAI | CASTG | 1 cut(s) | 130 |
| TseFI | GTSAC | 1 cut(s) | 452 |
| TseI | GCWGC | 4 cut(s) | 14, 31, 88, 433 |
| Tsp45I | GTSAC | 1 cut(s) | 452 |
| TspDTI | ATGAA | 3 cut(s) | 380, 551, 596 |
| TspGWI | ACGGA | 2 cut(s) | 289, 548 |
| TspRI | CASTG | 1 cut(s) | 130 |
| Vha464I | CTTAAG | 1 cut(s) | 245 |
| VpaK11BI | GGWCC | 2 cut(s) | 107, 223 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 395, 684 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 414 |
| XmnI | GAANNNNTTC | 1 cut(s) | 540 |
| XspI | CTAG | 2 cut(s) | 282, 630 |