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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 3 cut(s) | 603, 648, 861 |
| AasI | GACNNNNNNGTC | 3 cut(s) | 711, 924, 1139 |
| AatII | GACGTC | 1 cut(s) | 1081 |
| AccB1I | GGYRCC | 2 cut(s) | 803, 1016 |
| AccBSI | CCGCTC | 2 cut(s) | 726, 939 |
| AccIII | TCCGGA | 1 cut(s) | 130 |
| AciI | CCGC | 8 cut(s) | 353, 724, 758, 807, 937, 958, 971, 1020 |
| AclWI | GGATC | 1 cut(s) | 536 |
| AcvI | CACGTG | 4 cut(s) | 767, 785, 980, 998 |
| AcyI | GRCGYC | 3 cut(s) | 804, 1017, 1078 |
| AdeI | CACNNNGTG | 2 cut(s) | 770, 983 |
| AfaI | GTAC | 1 cut(s) | 220 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 64, 662, 663, 786, 875, 876, 999, 1072, 1073 |
| AflIII | ACRYGT | 7 cut(s) | 221, 706, 764, 782, 919, 977, 995 |
| AgsI | TTSAA | 7 cut(s) | 325, 361, 384, 609, 755, 968, 1195 |
| AjiI | CACGTC | 2 cut(s) | 707, 920 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 273, 305 |
| AluBI | AGCT | 4 cut(s) | 275, 445, 547, 569 |
| AluI | AGCT | 4 cut(s) | 275, 445, 547, 569 |
| Alw26I | GTCTC | 1 cut(s) | 481 |
| AlwI | GGATC | 1 cut(s) | 536 |
| Aor13HI | TCCGGA | 1 cut(s) | 130 |
| AoxI | GGCC | 1 cut(s) | 611 |
| AspA2I | CCTAGG | 1 cut(s) | 1070 |
| AspLEI | GCGC | 3 cut(s) | 806, 882, 1019 |
| AspS9I | GGNCC | 6 cut(s) | 328, 612, 713, 926, 1124, 1132 |
| AsuHPI | GGTGA | 3 cut(s) | 454, 1171, 1178 |
| AvaII | GGWCC | 5 cut(s) | 328, 713, 926, 1124, 1132 |
| AvrII | CCTAGG | 1 cut(s) | 1070 |
| AxyI | CCTNAGG | 1 cut(s) | 1128 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 46, 79 |
| BanI | GGYRCC | 2 cut(s) | 803, 1016 |
| BauI | CACGAG | 1 cut(s) | 590 |
| BbrPI | CACGTG | 4 cut(s) | 767, 785, 980, 998 |
| BccI | CCATC | 5 cut(s) | 695, 812, 908, 1025, 1157 |
| BceAI | ACGGC | 2 cut(s) | 798, 1011 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 495, 500, 529, 534 |
| BciVI | GTATCC | 3 cut(s) | 47, 754, 967 |
| BcoDI | GTCTC | 1 cut(s) | 481 |
| BfaI | CTAG | 3 cut(s) | 278, 522, 1071 |
| BfmI | CTRYAG | 1 cut(s) | 564 |
| BfoI | RGCGCY | 2 cut(s) | 807, 1020 |
| BfuI | GTATCC | 3 cut(s) | 47, 754, 967 |
| BisI | GCNGC | 2 cut(s) | 807, 1020 |
| BlnI | CCTAGG | 1 cut(s) | 1070 |
| BlsI | GCNGC | 2 cut(s) | 808, 1021 |
| Bme18I | GGWCC | 5 cut(s) | 328, 713, 926, 1124, 1132 |
| BmgBI | CACGTC | 2 cut(s) | 707, 920 |
| BmgT120I | GGNCC | 6 cut(s) | 328, 612, 713, 926, 1124, 1132 |
| BmiI | GGNNCC | 6 cut(s) | 714, 805, 826, 927, 1018, 1039 |
| BmsI | GCATC | 2 cut(s) | 225, 244 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 665, 697, 878, 910 |
| BpmI | CTGGAG | 1 cut(s) | 1221 |
| BsaAI | YACGTR | 4 cut(s) | 767, 785, 980, 998 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1173 |
| BsaHI | GRCGYC | 3 cut(s) | 804, 1017, 1078 |
| BsaJI | CCNNGG | 3 cut(s) | 828, 1041, 1070 |
| BsaWI | WCCGGW | 1 cut(s) | 130 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 208, 238, 781, 811, 994, 1024 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 64, 662, 663, 786, 875, 876, 999, 1072, 1073 |
| Bse21I | CCTNAGG | 1 cut(s) | 1128 |
| Bse3DI | GCAATG | 4 cut(s) | 301, 523, 781, 994 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1173 |
| BseAI | TCCGGA | 1 cut(s) | 130 |
| BseDI | CCNNGG | 3 cut(s) | 828, 1041, 1070 |
| BseGI | GGATG | 1 cut(s) | 1225 |
| BseJI | GATNNNNATC | 1 cut(s) | 1173 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 64, 662, 663, 786, 875, 876, 999, 1072, 1073 |
| BseMI | GCAATG | 4 cut(s) | 301, 523, 781, 994 |
| BseMII | CTCAG | 3 cut(s) | 492, 561, 1119 |
| BseRI | GAGGAG | 1 cut(s) | 302 |
| BsgI | GTGCAG | 1 cut(s) | 1196 |
| BshFI | GGCC | 1 cut(s) | 613 |
| BshNI | GGYRCC | 2 cut(s) | 803, 1016 |
| BsiSI | CCGG | 1 cut(s) | 131 |
| BslFI | GGGAC | 3 cut(s) | 708, 921, 1089 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 64, 662, 663, 786, 875, 876, 999, 1072, 1073 |
| BsmAI | GTCTC | 1 cut(s) | 481 |
| BsmBI | CGTCTC | 1 cut(s) | 481 |
| BsmFI | GGGAC | 3 cut(s) | 708, 921, 1089 |
| BsmI | GAATGC | 5 cut(s) | 169, 186, 518, 630, 843 |
| BsnI | GGCC | 1 cut(s) | 613 |
| Bsp13I | TCCGGA | 1 cut(s) | 130 |
| Bsp143I | GATC | 2 cut(s) | 227, 528 |
| Bsp19I | CCATGG | 2 cut(s) | 828, 1041 |
| BspACI | CCGC | 8 cut(s) | 353, 724, 758, 807, 937, 958, 971, 1020 |
| BspANI | GGCC | 1 cut(s) | 613 |
| BspCNI | CTCAG | 3 cut(s) | 491, 562, 1120 |
| BspEI | TCCGGA | 1 cut(s) | 130 |
| BspHI | TCATGA | 3 cut(s) | 531, 634, 847 |
| BspLI | GGNNCC | 6 cut(s) | 714, 805, 826, 927, 1018, 1039 |
| BspPI | GGATC | 1 cut(s) | 536 |
| BspT107I | GGYRCC | 2 cut(s) | 803, 1016 |
| BsrBI | CCGCTC | 2 cut(s) | 726, 939 |
| BsrDI | GCAATG | 4 cut(s) | 301, 523, 781, 994 |
| BssECI | CCNNGG | 3 cut(s) | 828, 1041, 1070 |
| BssMI | GATC | 2 cut(s) | 227, 528 |
| BssNI | GRCGYC | 3 cut(s) | 804, 1017, 1078 |
| BssSI | CACGAG | 1 cut(s) | 590 |
| BssT1I | CCWWGG | 3 cut(s) | 828, 1041, 1070 |
| Bst2BI | CACGAG | 1 cut(s) | 590 |
| Bst6I | CTCTTC | 2 cut(s) | 276, 396 |
| BstACI | GRCGYC | 3 cut(s) | 804, 1017, 1078 |
| BstBAI | YACGTR | 4 cut(s) | 767, 785, 980, 998 |
| BstC8I | GCNNGC | 2 cut(s) | 811, 1024 |
| BstDEI | CTNAG | 8 cut(s) | 159, 176, 478, 570, 624, 684, 897, 1128 |
| BstDSI | CCRYGG | 2 cut(s) | 828, 1041 |
| BstEII | GGTNACC | 1 cut(s) | 67 |
| BstF5I | GGATG | 1 cut(s) | 1225 |
| BstH2I | RGCGCY | 2 cut(s) | 807, 1020 |
| BstHHI | GCGC | 3 cut(s) | 806, 882, 1019 |
| BstKTI | GATC | 2 cut(s) | 230, 531 |
| BstMAI | GTCTC | 1 cut(s) | 481 |
| BstMBI | GATC | 2 cut(s) | 227, 528 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 810, 831, 840, 1023, 1044 |
| BstNSI | RCATGY | 2 cut(s) | 225, 1091 |
| BstPI | GGTNACC | 1 cut(s) | 67 |
| BstSFI | CTRYAG | 1 cut(s) | 564 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1128 |
| BsuI | GTATCC | 3 cut(s) | 47, 754, 967 |
| BsuRI | GGCC | 1 cut(s) | 613 |
| BtgI | CCRYGG | 2 cut(s) | 828, 1041 |
| BtrI | CACGTC | 2 cut(s) | 707, 920 |
| BtsCI | GGATG | 1 cut(s) | 1225 |
| Cac8I | GCNNGC | 2 cut(s) | 811, 1024 |
| CciI | TCATGA | 3 cut(s) | 531, 634, 847 |
| CfoI | GCGC | 3 cut(s) | 806, 882, 1019 |
| Cfr13I | GGNCC | 6 cut(s) | 328, 612, 713, 926, 1124, 1132 |
| Csp6I | GTAC | 1 cut(s) | 219 |
| CviQI | GTAC | 1 cut(s) | 219 |
| DdeI | CTNAG | 8 cut(s) | 159, 176, 478, 570, 624, 684, 897, 1128 |
| DinI | GGCGCC | 2 cut(s) | 805, 1018 |
| DpnI | GATC | 2 cut(s) | 229, 530 |
| DpnII | GATC | 2 cut(s) | 227, 528 |
| DraIII | CACNNNGTG | 2 cut(s) | 770, 983 |
| DrdI | GACNNNNNNGTC | 3 cut(s) | 711, 924, 1139 |
| DseDI | GACNNNNNNGTC | 3 cut(s) | 711, 924, 1139 |
| Eam1104I | CTCTTC | 2 cut(s) | 276, 396 |
| EarI | CTCTTC | 2 cut(s) | 276, 396 |
| Eco130I | CCWWGG | 3 cut(s) | 828, 1041, 1070 |
| Eco47I | GGWCC | 5 cut(s) | 328, 713, 926, 1124, 1132 |
| Eco72I | CACGTG | 4 cut(s) | 767, 785, 980, 998 |
| Eco81I | CCTNAGG | 1 cut(s) | 1128 |
| Eco91I | GGTNACC | 1 cut(s) | 67 |
| EcoO65I | GGTNACC | 1 cut(s) | 67 |
| EcoT14I | CCWWGG | 3 cut(s) | 828, 1041, 1070 |
| EgeI | GGCGCC | 2 cut(s) | 805, 1018 |
| EheI | GGCGCC | 2 cut(s) | 805, 1018 |
| ErhI | CCWWGG | 3 cut(s) | 828, 1041, 1070 |
| Esp3I | CGTCTC | 1 cut(s) | 481 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1131, 1163 |
| FaqI | GGGAC | 3 cut(s) | 708, 921, 1089 |
| Fnu4HI | GCNGC | 2 cut(s) | 807, 1020 |
| FokI | GGATG | 1 cut(s) | 1232 |
| Fsp4HI | GCNGC | 2 cut(s) | 807, 1020 |
| FspBI | CTAG | 3 cut(s) | 278, 522, 1071 |
| GlaI | GCGC | 3 cut(s) | 805, 881, 1018 |
| GluI | GCNGC | 2 cut(s) | 807, 1020 |
| GsuI | CTGGAG | 1 cut(s) | 1221 |
| HaeII | RGCGCY | 2 cut(s) | 807, 1020 |
| HaeIII | GGCC | 1 cut(s) | 613 |
| HapII | CCGG | 1 cut(s) | 131 |
| HhaI | GCGC | 3 cut(s) | 806, 882, 1019 |
| Hin1I | GRCGYC | 3 cut(s) | 804, 1017, 1078 |
| Hin6I | GCGC | 3 cut(s) | 804, 880, 1017 |
| HinP1I | GCGC | 3 cut(s) | 804, 880, 1017 |
| HincII | GTYRAC | 1 cut(s) | 1063 |
| HindII | GTYRAC | 1 cut(s) | 1063 |
| HindIII | AAGCTT | 1 cut(s) | 545 |
| HinfI | GANTC | 5 cut(s) | 18, 38, 305, 491, 1059 |
| HpaII | CCGG | 1 cut(s) | 131 |
| HphI | GGTGA | 3 cut(s) | 454, 1171, 1178 |
| Hpy166II | GTNNAC | 2 cut(s) | 1063, 1082 |
| Hpy188I | TCNGA | 1 cut(s) | 232 |
| Hpy188III | TCNNGA | 9 cut(s) | 51, 131, 278, 420, 532, 592, 635, 848, 1200 |
| Hpy8I | GTNNAC | 2 cut(s) | 1063, 1082 |
| Hpy99I | CGWCG | 2 cut(s) | 77, 191 |
| HpyAV | CCTTC | 4 cut(s) | 319, 478, 731, 944 |
| HpyCH4IV | ACGT | 8 cut(s) | 75, 706, 766, 784, 919, 979, 997, 1078 |
| HpyCH4V | TGCA | 9 cut(s) | 238, 257, 516, 653, 669, 866, 1091, 1213, 1226 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 810, 831, 840, 1023, 1044 |
| HpyF3I | CTNAG | 8 cut(s) | 159, 176, 478, 570, 624, 684, 897, 1128 |
| HpySE526I | ACGT | 8 cut(s) | 75, 706, 766, 784, 919, 979, 997, 1078 |
| Hsp92I | GRCGYC | 3 cut(s) | 804, 1017, 1078 |
| HspAI | GCGC | 3 cut(s) | 804, 880, 1017 |
| KasI | GGCGCC | 2 cut(s) | 803, 1016 |
| Kpn2I | TCCGGA | 1 cut(s) | 130 |
| Kzo9I | GATC | 2 cut(s) | 227, 528 |
| LmnI | GCTCC | 3 cut(s) | 336, 830, 1043 |
| LpnPI | CCDG | 8 cut(s) | 30, 144, 330, 405, 823, 1036, 1140, 1185 |
| LweI | GCATC | 2 cut(s) | 225, 244 |
| MaeI | CTAG | 3 cut(s) | 278, 522, 1071 |
| MaeII | ACGT | 8 cut(s) | 75, 706, 766, 784, 919, 979, 997, 1078 |
| MaeIII | GTNAC | 1 cut(s) | 67 |
| MalI | GATC | 2 cut(s) | 229, 530 |
| MbiI | CCGCTC | 2 cut(s) | 726, 939 |
| MboI | GATC | 2 cut(s) | 227, 528 |
| MboII | GAAGA | 6 cut(s) | 293, 383, 607, 1166, 1169, 1172 |
| Mly113I | GGCGCC | 2 cut(s) | 804, 1017 |
| MlyI | GAGTC | 4 cut(s) | 12, 32, 500, 1068 |
| MmeI | TCCRAC | 1 cut(s) | 598 |
| MroI | TCCGGA | 1 cut(s) | 130 |
| MseI | TTAA | 2 cut(s) | 540, 1101 |
| MslI | CAYNNNNRTG | 2 cut(s) | 590, 1218 |
| MspI | CCGG | 1 cut(s) | 131 |
| Mva1269I | GAATGC | 5 cut(s) | 169, 186, 518, 630, 843 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 810, 831, 840, 1023, 1044 |
| NarI | GGCGCC | 2 cut(s) | 804, 1017 |
| NcoI | CCATGG | 2 cut(s) | 828, 1041 |
| NdeII | GATC | 2 cut(s) | 227, 528 |
| NlaIV | GGNNCC | 6 cut(s) | 714, 805, 826, 927, 1018, 1039 |
| NspI | RCATGY | 2 cut(s) | 225, 1091 |
| PagI | TCATGA | 3 cut(s) | 531, 634, 847 |
| PciI | ACATGT | 1 cut(s) | 221 |
| PctI | GAATGC | 5 cut(s) | 169, 186, 518, 630, 843 |
| PfeI | GAWTC | 1 cut(s) | 305 |
| PkrI | GCNGC | 2 cut(s) | 808, 1021 |
| PleI | GAGTC | 4 cut(s) | 12, 32, 499, 1067 |
| PluTI | GGCGCC | 2 cut(s) | 807, 1020 |
| PmaCI | CACGTG | 4 cut(s) | 767, 785, 980, 998 |
| PmlI | CACGTG | 4 cut(s) | 767, 785, 980, 998 |
| PpsI | GAGTC | 4 cut(s) | 12, 32, 499, 1067 |
| Ppu21I | YACGTR | 4 cut(s) | 767, 785, 980, 998 |
| PscI | ACATGT | 1 cut(s) | 221 |
| PsiI | TTATAA | 3 cut(s) | 603, 648, 861 |
| PspCI | CACGTG | 4 cut(s) | 767, 785, 980, 998 |
| PspEI | GGTNACC | 1 cut(s) | 67 |
| PspN4I | GGNNCC | 6 cut(s) | 714, 805, 826, 927, 1018, 1039 |
| PspPI | GGNCC | 6 cut(s) | 328, 612, 713, 926, 1124, 1132 |
| RsaI | GTAC | 1 cut(s) | 220 |
| RsaNI | GTAC | 1 cut(s) | 219 |
| RseI | CAYNNNNRTG | 2 cut(s) | 590, 1218 |
| SaqAI | TTAA | 2 cut(s) | 540, 1101 |
| SatI | GCNGC | 2 cut(s) | 807, 1020 |
| Sau3AI | GATC | 2 cut(s) | 227, 528 |
| Sau96I | GGNCC | 6 cut(s) | 328, 612, 713, 926, 1124, 1132 |
| SchI | GAGTC | 4 cut(s) | 12, 32, 500, 1068 |
| SfaNI | GCATC | 2 cut(s) | 225, 244 |
| SfcI | CTRYAG | 1 cut(s) | 564 |
| SfoI | GGCGCC | 2 cut(s) | 805, 1018 |
| SinI | GGWCC | 5 cut(s) | 328, 713, 926, 1124, 1132 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 590, 1218 |
| SsiI | CCGC | 8 cut(s) | 353, 724, 758, 807, 937, 958, 971, 1020 |
| SspDI | GGCGCC | 2 cut(s) | 803, 1016 |
| SspI | AATATT | 1 cut(s) | 105 |
| SspMI | CTAG | 3 cut(s) | 278, 522, 1071 |
| StyI | CCWWGG | 3 cut(s) | 828, 1041, 1070 |
| TaiI | ACGT | 8 cut(s) | 78, 709, 769, 787, 922, 982, 1000, 1081 |
| TaqI | TCGA | 6 cut(s) | 5, 21, 144, 169, 186, 505 |
| TatI | WGTACW | 1 cut(s) | 218 |
| TauI | GCSGC | 2 cut(s) | 809, 1022 |
| TfiI | GAWTC | 1 cut(s) | 305 |
| Tru1I | TTAA | 2 cut(s) | 540, 1101 |
| Tru9I | TTAA | 2 cut(s) | 540, 1101 |
| TspDTI | ATGAA | 6 cut(s) | 24, 623, 651, 836, 864, 1221 |
| TspGWI | ACGGA | 2 cut(s) | 541, 1137 |
| VpaK11BI | GGWCC | 5 cut(s) | 328, 713, 926, 1124, 1132 |
| XbaI | TCTAGA | 1 cut(s) | 277 |
| XceI | RCATGY | 2 cut(s) | 225, 1091 |
| XmaJI | CCTAGG | 1 cut(s) | 1070 |
| XspI | CTAG | 3 cut(s) | 278, 522, 1071 |
| ZraI | GACGTC | 1 cut(s) | 1079 |