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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 441, 599 |
| AccII | CGCG | 1 cut(s) | 426 |
| AccIII | TCCGGA | 1 cut(s) | 406 |
| AciI | CCGC | 2 cut(s) | 106, 520 |
| AclWI | GGATC | 2 cut(s) | 8, 366 |
| AcoI | YGGCCR | 1 cut(s) | 586 |
| AcsI | RAATTY | 1 cut(s) | 173 |
| AcyI | GRCGYC | 2 cut(s) | 442, 600 |
| AgsI | TTSAA | 2 cut(s) | 121, 637 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 33, 65 |
| AluBI | AGCT | 3 cut(s) | 307, 722, 773 |
| AluI | AGCT | 3 cut(s) | 307, 722, 773 |
| Alw21I | GWGCWC | 2 cut(s) | 309, 724 |
| Alw26I | GTCTC | 1 cut(s) | 37 |
| AlwI | GGATC | 2 cut(s) | 8, 366 |
| Aor13HI | TCCGGA | 1 cut(s) | 406 |
| AoxI | GGCC | 1 cut(s) | 586 |
| ApoI | RAATTY | 1 cut(s) | 173 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 150 |
| AspLEI | GCGC | 3 cut(s) | 428, 444, 602 |
| BaeGI | GKGCMC | 1 cut(s) | 709 |
| BalI | TGGCCA | 1 cut(s) | 588 |
| BanI | GGYRCC | 2 cut(s) | 441, 599 |
| BanII | GRGCYC | 2 cut(s) | 309, 724 |
| BauI | CACGAG | 1 cut(s) | 723 |
| BbsI | GAAGAC | 1 cut(s) | 221 |
| Bbv12I | GWGCWC | 2 cut(s) | 309, 724 |
| BccI | CCATC | 3 cut(s) | 87, 241, 627 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 260, 294 |
| BciVI | GTATCC | 1 cut(s) | 463 |
| BclI | TGATCA | 1 cut(s) | 697 |
| BcoDI | GTCTC | 1 cut(s) | 37 |
| BfaI | CTAG | 4 cut(s) | 83, 395, 477, 809 |
| BfoI | RGCGCY | 2 cut(s) | 445, 603 |
| BfuI | GTATCC | 1 cut(s) | 463 |
| BmiI | GGNNCC | 3 cut(s) | 443, 542, 601 |
| BpiI | GAAGAC | 1 cut(s) | 221 |
| Bsa29I | ATCGAT | 1 cut(s) | 270 |
| BsaHI | GRCGYC | 2 cut(s) | 442, 600 |
| BsaI | GGTCTC | 1 cut(s) | 37 |
| BsaJI | CCNNGG | 1 cut(s) | 375 |
| BsaWI | WCCGGW | 1 cut(s) | 406 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 720, 750 |
| BseAI | TCCGGA | 1 cut(s) | 406 |
| BseCI | ATCGAT | 1 cut(s) | 270 |
| BseDI | CCNNGG | 1 cut(s) | 375 |
| BseGI | GGATG | 1 cut(s) | 345 |
| BseMII | CTCAG | 1 cut(s) | 156 |
| BseSI | GKGCMC | 1 cut(s) | 709 |
| Bsh1236I | CGCG | 1 cut(s) | 426 |
| BshFI | GGCC | 1 cut(s) | 588 |
| BshNI | GGYRCC | 2 cut(s) | 441, 599 |
| BshVI | ATCGAT | 1 cut(s) | 270 |
| BsiHKAI | GWGCWC | 2 cut(s) | 309, 724 |
| BsiSI | CCGG | 1 cut(s) | 407 |
| BsmAI | GTCTC | 1 cut(s) | 37 |
| BsnI | GGCC | 1 cut(s) | 588 |
| Bso31I | GGTCTC | 1 cut(s) | 37 |
| Bsp1286I | GDGCHC | 3 cut(s) | 309, 709, 724 |
| Bsp13I | TCCGGA | 1 cut(s) | 406 |
| Bsp143I | GATC | 6 cut(s) | 13, 189, 371, 697, 793, 805 |
| Bsp19I | CCATGG | 1 cut(s) | 375 |
| BspACI | CCGC | 2 cut(s) | 106, 520 |
| BspANI | GGCC | 1 cut(s) | 588 |
| BspCNI | CTCAG | 1 cut(s) | 155 |
| BspDI | ATCGAT | 1 cut(s) | 270 |
| BspEI | TCCGGA | 1 cut(s) | 406 |
| BspFNI | CGCG | 1 cut(s) | 426 |
| BspHI | TCATGA | 1 cut(s) | 301 |
| BspLI | GGNNCC | 3 cut(s) | 443, 542, 601 |
| BspPI | GGATC | 2 cut(s) | 8, 366 |
| BspT107I | GGYRCC | 2 cut(s) | 441, 599 |
| BspTNI | GGTCTC | 1 cut(s) | 37 |
| BssECI | CCNNGG | 1 cut(s) | 375 |
| BssMI | GATC | 6 cut(s) | 13, 189, 371, 697, 793, 805 |
| BssNI | GRCGYC | 2 cut(s) | 442, 600 |
| BssSI | CACGAG | 1 cut(s) | 723 |
| BssT1I | CCWWGG | 1 cut(s) | 375 |
| Bst2BI | CACGAG | 1 cut(s) | 723 |
| BstACI | GRCGYC | 2 cut(s) | 442, 600 |
| BstDEI | CTNAG | 5 cut(s) | 142, 255, 432, 464, 612 |
| BstDSI | CCRYGG | 1 cut(s) | 375 |
| BstEII | GGTNACC | 1 cut(s) | 515 |
| BstF5I | GGATG | 1 cut(s) | 345 |
| BstFNI | CGCG | 1 cut(s) | 426 |
| BstH2I | RGCGCY | 2 cut(s) | 445, 603 |
| BstHHI | GCGC | 3 cut(s) | 428, 444, 602 |
| BstKTI | GATC | 6 cut(s) | 16, 192, 374, 700, 796, 808 |
| BstMAI | GTCTC | 1 cut(s) | 37 |
| BstMBI | GATC | 6 cut(s) | 13, 189, 371, 697, 793, 805 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 448, 638, 749 |
| BstPI | GGTNACC | 1 cut(s) | 515 |
| BstSLI | GKGCMC | 1 cut(s) | 709 |
| BstUI | CGCG | 1 cut(s) | 426 |
| BstV2I | GAAGAC | 1 cut(s) | 221 |
| BstX2I | RGATCY | 2 cut(s) | 13, 371 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 596 |
| BstYI | RGATCY | 2 cut(s) | 13, 371 |
| Bsu15I | ATCGAT | 1 cut(s) | 270 |
| BsuI | GTATCC | 1 cut(s) | 463 |
| BsuRI | GGCC | 1 cut(s) | 588 |
| BsuTUI | ATCGAT | 1 cut(s) | 270 |
| BtgI | CCRYGG | 1 cut(s) | 375 |
| BtgZI | GCGATG | 2 cut(s) | 215, 724 |
| BtsCI | GGATG | 1 cut(s) | 345 |
| BtsI | GCAGTG | 1 cut(s) | 276 |
| BtsIMutI | CAGTG | 1 cut(s) | 276 |
| CciI | TCATGA | 1 cut(s) | 301 |
| CfoI | GCGC | 3 cut(s) | 428, 444, 602 |
| ClaI | ATCGAT | 1 cut(s) | 270 |
| CseI | GACGC | 1 cut(s) | 638 |
| CviAII | CATG | 4 cut(s) | 302, 338, 376, 590 |
| CviJI | RGCY | 6 cut(s) | 25, 307, 588, 618, 722, 773 |
| CviKI_1 | RGCY | 6 cut(s) | 25, 307, 588, 618, 722, 773 |
| DdeI | CTNAG | 5 cut(s) | 142, 255, 432, 464, 612 |
| DinI | GGCGCC | 2 cut(s) | 443, 601 |
| DpnI | GATC | 6 cut(s) | 15, 191, 373, 699, 795, 807 |
| DpnII | GATC | 6 cut(s) | 13, 189, 371, 697, 793, 805 |
| EaeI | YGGCCR | 1 cut(s) | 586 |
| Ecl136II | GAGCTC | 2 cut(s) | 307, 722 |
| Eco130I | CCWWGG | 1 cut(s) | 375 |
| Eco24I | GRGCYC | 2 cut(s) | 309, 724 |
| Eco31I | GGTCTC | 1 cut(s) | 37 |
| Eco53kI | GAGCTC | 2 cut(s) | 307, 722 |
| Eco91I | GGTNACC | 1 cut(s) | 515 |
| EcoICRI | GAGCTC | 2 cut(s) | 307, 722 |
| EcoO65I | GGTNACC | 1 cut(s) | 515 |
| EcoT14I | CCWWGG | 1 cut(s) | 375 |
| EcoT38I | GRGCYC | 2 cut(s) | 309, 724 |
| EgeI | GGCGCC | 2 cut(s) | 443, 601 |
| EheI | GGCGCC | 2 cut(s) | 443, 601 |
| ErhI | CCWWGG | 1 cut(s) | 375 |
| FaeI | CATG | 4 cut(s) | 305, 341, 379, 593 |
| FatI | CATG | 4 cut(s) | 301, 337, 375, 589 |
| FbaI | TGATCA | 1 cut(s) | 697 |
| FokI | GGATG | 1 cut(s) | 332 |
| FriOI | GRGCYC | 2 cut(s) | 309, 724 |
| FspBI | CTAG | 4 cut(s) | 83, 395, 477, 809 |
| GlaI | GCGC | 3 cut(s) | 427, 443, 601 |
| HaeII | RGCGCY | 2 cut(s) | 445, 603 |
| HaeIII | GGCC | 1 cut(s) | 588 |
| HapII | CCGG | 1 cut(s) | 407 |
| HgaI | GACGC | 1 cut(s) | 638 |
| HhaI | GCGC | 3 cut(s) | 428, 444, 602 |
| Hin1I | GRCGYC | 2 cut(s) | 442, 600 |
| Hin1II | CATG | 4 cut(s) | 305, 341, 379, 593 |
| Hin6I | GCGC | 3 cut(s) | 426, 442, 600 |
| HinP1I | GCGC | 3 cut(s) | 426, 442, 600 |
| HincII | GTYRAC | 1 cut(s) | 554 |
| HindII | GTYRAC | 1 cut(s) | 554 |
| HinfI | GANTC | 4 cut(s) | 65, 217, 267, 410 |
| HpaII | CCGG | 1 cut(s) | 407 |
| Hpy166II | GTNNAC | 1 cut(s) | 554 |
| Hpy188I | TCNGA | 2 cut(s) | 145, 697 |
| Hpy8I | GTNNAC | 1 cut(s) | 554 |
| HpyAV | CCTTC | 2 cut(s) | 15, 506 |
| HpyCH4IV | ACGT | 3 cut(s) | 57, 481, 556 |
| HpyCH4V | TGCA | 2 cut(s) | 242, 281 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 448, 638, 749 |
| HpyF3I | CTNAG | 5 cut(s) | 142, 255, 432, 464, 612 |
| HpySE526I | ACGT | 3 cut(s) | 57, 481, 556 |
| Hsp92I | GRCGYC | 2 cut(s) | 442, 600 |
| Hsp92II | CATG | 4 cut(s) | 305, 341, 379, 593 |
| HspAI | GCGC | 3 cut(s) | 426, 442, 600 |
| KasI | GGCGCC | 2 cut(s) | 441, 599 |
| Kpn2I | TCCGGA | 1 cut(s) | 406 |
| Ksp22I | TGATCA | 1 cut(s) | 697 |
| Kzo9I | GATC | 6 cut(s) | 13, 189, 371, 697, 793, 805 |
| LpnPI | CCDG | 6 cut(s) | 31, 83, 90, 420, 471, 570 |
| MaeI | CTAG | 4 cut(s) | 83, 395, 477, 809 |
| MaeII | ACGT | 3 cut(s) | 57, 481, 556 |
| MaeIII | GTNAC | 3 cut(s) | 62, 274, 515 |
| MalI | GATC | 6 cut(s) | 15, 191, 373, 699, 795, 807 |
| MboI | GATC | 6 cut(s) | 13, 189, 371, 697, 793, 805 |
| MboII | GAAGA | 8 cut(s) | 20, 23, 53, 226, 367, 773, 803, 812 |
| MflI | RGATCY | 2 cut(s) | 13, 371 |
| MhlI | GDGCHC | 3 cut(s) | 309, 709, 724 |
| MlsI | TGGCCA | 1 cut(s) | 588 |
| MluCI | AATT | 5 cut(s) | 173, 288, 364, 415, 732 |
| MluNI | TGGCCA | 1 cut(s) | 588 |
| Mly113I | GGCGCC | 2 cut(s) | 442, 600 |
| MlyI | GAGTC | 2 cut(s) | 59, 211 |
| MnlI | CCTC | 6 cut(s) | 113, 542, 562, 566, 592, 654 |
| Mox20I | TGGCCA | 1 cut(s) | 588 |
| MroI | TCCGGA | 1 cut(s) | 406 |
| MroXI | GAANNNNTTC | 1 cut(s) | 150 |
| MscI | TGGCCA | 1 cut(s) | 588 |
| MseI | TTAA | 2 cut(s) | 159, 167 |
| MslI | CAYNNNNRTG | 3 cut(s) | 350, 594, 624 |
| Msp20I | TGGCCA | 1 cut(s) | 588 |
| MspI | CCGG | 1 cut(s) | 407 |
| MvnI | CGCG | 1 cut(s) | 426 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 448, 638, 749 |
| NarI | GGCGCC | 2 cut(s) | 442, 600 |
| NcoI | CCATGG | 1 cut(s) | 375 |
| NdeII | GATC | 6 cut(s) | 13, 189, 371, 697, 793, 805 |
| NlaIII | CATG | 4 cut(s) | 305, 341, 379, 593 |
| NlaIV | GGNNCC | 3 cut(s) | 443, 542, 601 |
| NmuCI | GTSAC | 2 cut(s) | 62, 274 |
| PagI | TCATGA | 1 cut(s) | 301 |
| PdmI | GAANNNNTTC | 1 cut(s) | 150 |
| PfeI | GAWTC | 2 cut(s) | 267, 410 |
| PleI | GAGTC | 2 cut(s) | 59, 211 |
| PluTI | GGCGCC | 2 cut(s) | 445, 603 |
| PpsI | GAGTC | 2 cut(s) | 59, 211 |
| Psp124BI | GAGCTC | 2 cut(s) | 309, 724 |
| PspEI | GGTNACC | 1 cut(s) | 515 |
| PspN4I | GGNNCC | 3 cut(s) | 443, 542, 601 |
| PsuI | RGATCY | 2 cut(s) | 13, 371 |
| RseI | CAYNNNNRTG | 3 cut(s) | 350, 594, 624 |
| SacI | GAGCTC | 2 cut(s) | 309, 724 |
| SaqAI | TTAA | 2 cut(s) | 159, 167 |
| Sau3AI | GATC | 6 cut(s) | 13, 189, 371, 697, 793, 805 |
| SchI | GAGTC | 2 cut(s) | 59, 211 |
| SduI | GDGCHC | 3 cut(s) | 309, 709, 724 |
| SfoI | GGCGCC | 2 cut(s) | 443, 601 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 350, 594, 624 |
| Sse9I | AATT | 5 cut(s) | 173, 288, 364, 415, 732 |
| SsiI | CCGC | 2 cut(s) | 106, 520 |
| SspDI | GGCGCC | 2 cut(s) | 441, 599 |
| SspMI | CTAG | 4 cut(s) | 83, 395, 477, 809 |
| SstI | GAGCTC | 2 cut(s) | 309, 724 |
| StyI | CCWWGG | 1 cut(s) | 375 |
| TaiI | ACGT | 3 cut(s) | 60, 484, 559 |
| TaqI | TCGA | 5 cut(s) | 39, 265, 270, 368, 682 |
| TasI | AATT | 5 cut(s) | 173, 288, 364, 415, 732 |
| TfiI | GAWTC | 2 cut(s) | 267, 410 |
| Tru1I | TTAA | 2 cut(s) | 159, 167 |
| Tru9I | TTAA | 2 cut(s) | 159, 167 |
| TscAI | CASTG | 1 cut(s) | 283 |
| TseFI | GTSAC | 2 cut(s) | 62, 274 |
| Tsp45I | GTSAC | 2 cut(s) | 62, 274 |
| TspDTI | ATGAA | 5 cut(s) | 17, 21, 185, 290, 335 |
| TspGWI | ACGGA | 2 cut(s) | 50, 553 |
| TspRI | CASTG | 1 cut(s) | 283 |
| XapI | RAATTY | 1 cut(s) | 173 |
| XbaI | TCTAGA | 3 cut(s) | 394, 476, 808 |
| XmnI | GAANNNNTTC | 1 cut(s) | 150 |
| XspI | CTAG | 4 cut(s) | 83, 395, 477, 809 |