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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 264 |
| AccII | CGCG | 1 cut(s) | 182 |
| AciI | CCGC | 6 cut(s) | 24, 45, 48, 280, 340, 622 |
| AclWI | GGATC | 2 cut(s) | 225, 305 |
| AcsI | RAATTY | 2 cut(s) | 363, 689 |
| AfaI | GTAC | 1 cut(s) | 254 |
| AgsI | TTSAA | 1 cut(s) | 81 |
| AjnI | CCWGG | 1 cut(s) | 390 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 549, 581 |
| AluBI | AGCT | 2 cut(s) | 416, 422 |
| AluI | AGCT | 2 cut(s) | 416, 422 |
| Alw26I | GTCTC | 2 cut(s) | 553, 755 |
| AlwI | GGATC | 2 cut(s) | 225, 305 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 172, 256 |
| Ama87I | CYCGRG | 1 cut(s) | 380 |
| AoxI | GGCC | 1 cut(s) | 21 |
| ApeKI | GCWGC | 3 cut(s) | 106, 197, 310 |
| ApoI | RAATTY | 2 cut(s) | 363, 689 |
| AseI | ATTAAT | 1 cut(s) | 269 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 666 |
| AspLEI | GCGC | 2 cut(s) | 182, 184 |
| AspS9I | GGNCC | 1 cut(s) | 21 |
| AsuHPI | GGTGA | 1 cut(s) | 68 |
| AvaI | CYCGRG | 1 cut(s) | 380 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 722, 754 |
| BbsI | GAAGAC | 2 cut(s) | 534, 737 |
| BbvI | GCAGC | 3 cut(s) | 118, 209, 297 |
| BccI | CCATC | 4 cut(s) | 210, 230, 476, 603 |
| BciT130I | CCWGG | 1 cut(s) | 392 |
| BcoDI | GTCTC | 2 cut(s) | 553, 755 |
| BfaI | CTAG | 5 cut(s) | 152, 263, 368, 387, 599 |
| BfuAI | ACCTGC | 1 cut(s) | 264 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 449 |
| BisI | GCNGC | 5 cut(s) | 24, 46, 107, 198, 311 |
| BlsI | GCNGC | 5 cut(s) | 25, 47, 108, 199, 312 |
| Bme1390I | CCNGG | 1 cut(s) | 392 |
| BmeT110I | CYCGRG | 1 cut(s) | 380 |
| BmgT120I | GGNCC | 1 cut(s) | 21 |
| BmiI | GGNNCC | 1 cut(s) | 40 |
| BmrFI | CCNGG | 1 cut(s) | 392 |
| BmsI | GCATC | 1 cut(s) | 355 |
| BpiI | GAAGAC | 2 cut(s) | 534, 737 |
| BpmI | CTGGAG | 1 cut(s) | 488 |
| BpuEI | CTTGAG | 2 cut(s) | 335, 402 |
| BsaBI | GATNNNNATC | 1 cut(s) | 13 |
| BsaI | GGTCTC | 1 cut(s) | 553 |
| Bse118I | RCCGGY | 1 cut(s) | 41 |
| Bse1I | ACTGG | 2 cut(s) | 250, 505 |
| Bse8I | GATNNNNATC | 1 cut(s) | 13 |
| BseBI | CCWGG | 1 cut(s) | 392 |
| BseGI | GGATG | 2 cut(s) | 471, 499 |
| BseJI | GATNNNNATC | 1 cut(s) | 13 |
| BseNI | ACTGG | 2 cut(s) | 250, 505 |
| BsePI | GCGCGC | 1 cut(s) | 180 |
| BseXI | GCAGC | 3 cut(s) | 118, 209, 297 |
| BseYI | CCCAGC | 1 cut(s) | 176 |
| Bsh1236I | CGCG | 1 cut(s) | 182 |
| BshFI | GGCC | 1 cut(s) | 23 |
| BsiHKCI | CYCGRG | 1 cut(s) | 380 |
| BsiSI | CCGG | 1 cut(s) | 42 |
| BsmAI | GTCTC | 2 cut(s) | 553, 755 |
| BsmBI | CGTCTC | 1 cut(s) | 755 |
| BsnI | GGCC | 1 cut(s) | 23 |
| Bso31I | GGTCTC | 1 cut(s) | 553 |
| BsoBI | CYCGRG | 1 cut(s) | 380 |
| Bsp143I | GATC | 4 cut(s) | 98, 230, 297, 705 |
| BspACI | CCGC | 6 cut(s) | 24, 45, 48, 280, 340, 622 |
| BspANI | GGCC | 1 cut(s) | 23 |
| BspFNI | CGCG | 1 cut(s) | 182 |
| BspLI | GGNNCC | 1 cut(s) | 40 |
| BspMI | ACCTGC | 1 cut(s) | 264 |
| BspPI | GGATC | 2 cut(s) | 225, 305 |
| BspTNI | GGTCTC | 1 cut(s) | 553 |
| BsrFI | RCCGGY | 1 cut(s) | 41 |
| BsrI | ACTGG | 2 cut(s) | 250, 505 |
| BssAI | RCCGGY | 1 cut(s) | 41 |
| BssHII | GCGCGC | 1 cut(s) | 180 |
| BssMI | GATC | 4 cut(s) | 98, 230, 297, 705 |
| Bst2UI | CCWGG | 1 cut(s) | 392 |
| Bst4CI | ACNGT | 2 cut(s) | 168, 406 |
| BstC8I | GCNNGC | 4 cut(s) | 43, 173, 182, 344 |
| BstDEI | CTNAG | 2 cut(s) | 31, 445 |
| BstF5I | GGATG | 2 cut(s) | 471, 499 |
| BstFNI | CGCG | 1 cut(s) | 182 |
| BstHHI | GCGC | 2 cut(s) | 182, 184 |
| BstKTI | GATC | 4 cut(s) | 101, 233, 300, 708 |
| BstMAI | GTCTC | 2 cut(s) | 553, 755 |
| BstMBI | GATC | 4 cut(s) | 98, 230, 297, 705 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 168, 177, 181, 206, 428, 449, 458 |
| BstNI | CCWGG | 1 cut(s) | 392 |
| BstNSI | RCATGY | 1 cut(s) | 400 |
| BstSCI | CCNGG | 1 cut(s) | 390 |
| BstUI | CGCG | 1 cut(s) | 182 |
| BstV1I | GCAGC | 3 cut(s) | 118, 209, 297 |
| BstV2I | GAAGAC | 2 cut(s) | 534, 737 |
| BstX2I | RGATCY | 1 cut(s) | 230 |
| BstYI | RGATCY | 1 cut(s) | 230 |
| BsuRI | GGCC | 1 cut(s) | 23 |
| BtgZI | GCGATG | 1 cut(s) | 731 |
| BtsCI | GGATG | 2 cut(s) | 471, 499 |
| BtsIMutI | CAGTG | 1 cut(s) | 173 |
| BveI | ACCTGC | 1 cut(s) | 264 |
| Cac8I | GCNNGC | 4 cut(s) | 43, 173, 182, 344 |
| CaiI | CAGNNNCTG | 2 cut(s) | 172, 256 |
| CfoI | GCGC | 2 cut(s) | 182, 184 |
| Cfr10I | RCCGGY | 1 cut(s) | 41 |
| Cfr13I | GGNCC | 1 cut(s) | 21 |
| Csp6I | GTAC | 1 cut(s) | 253 |
| CviAII | CATG | 3 cut(s) | 18, 307, 397 |
| CviQI | GTAC | 1 cut(s) | 253 |
| DdeI | CTNAG | 2 cut(s) | 31, 445 |
| DpnI | GATC | 4 cut(s) | 100, 232, 299, 707 |
| DpnII | GATC | 4 cut(s) | 98, 230, 297, 705 |
| DraI | TTTAAA | 1 cut(s) | 636 |
| EciI | GGCGGA | 1 cut(s) | 329 |
| Eco31I | GGTCTC | 1 cut(s) | 553 |
| Eco88I | CYCGRG | 1 cut(s) | 380 |
| EcoRI | GAATTC | 1 cut(s) | 363 |
| EcoRII | CCWGG | 1 cut(s) | 390 |
| Esp3I | CGTCTC | 1 cut(s) | 755 |
| FaeI | CATG | 3 cut(s) | 21, 310, 400 |
| FatI | CATG | 3 cut(s) | 17, 306, 396 |
| FauNDI | CATATG | 1 cut(s) | 489 |
| Fnu4HI | GCNGC | 5 cut(s) | 24, 46, 107, 198, 311 |
| FokI | GGATG | 2 cut(s) | 458, 506 |
| Fsp4HI | GCNGC | 5 cut(s) | 24, 46, 107, 198, 311 |
| FspBI | CTAG | 5 cut(s) | 152, 263, 368, 387, 599 |
| GlaI | GCGC | 2 cut(s) | 181, 183 |
| GluI | GCNGC | 5 cut(s) | 24, 46, 107, 198, 311 |
| GsaI | CCCAGC | 1 cut(s) | 180 |
| GsuI | CTGGAG | 1 cut(s) | 488 |
| HaeIII | GGCC | 1 cut(s) | 23 |
| HapII | CCGG | 1 cut(s) | 42 |
| HhaI | GCGC | 2 cut(s) | 182, 184 |
| Hin1II | CATG | 3 cut(s) | 21, 310, 400 |
| Hin6I | GCGC | 2 cut(s) | 180, 182 |
| HinP1I | GCGC | 2 cut(s) | 180, 182 |
| HincII | GTYRAC | 1 cut(s) | 214 |
| HindII | GTYRAC | 1 cut(s) | 214 |
| HindIII | AAGCTT | 1 cut(s) | 420 |
| HinfI | GANTC | 5 cut(s) | 70, 376, 481, 581, 733 |
| HpaI | GTTAAC | 1 cut(s) | 214 |
| HpaII | CCGG | 1 cut(s) | 42 |
| HphI | GGTGA | 1 cut(s) | 68 |
| Hpy166II | GTNNAC | 1 cut(s) | 214 |
| Hpy188I | TCNGA | 4 cut(s) | 38, 98, 103, 661 |
| Hpy188III | TCNNGA | 4 cut(s) | 368, 380, 593, 647 |
| Hpy8I | GTNNAC | 1 cut(s) | 214 |
| HpyAV | CCTTC | 3 cut(s) | 250, 531, 752 |
| HpyCH4III | ACNGT | 2 cut(s) | 168, 406 |
| HpyCH4IV | ACGT | 1 cut(s) | 573 |
| HpyCH4V | TGCA | 4 cut(s) | 259, 275, 313, 756 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 168, 177, 181, 206, 428, 449, 458 |
| HpyF3I | CTNAG | 2 cut(s) | 31, 445 |
| HpySE526I | ACGT | 1 cut(s) | 573 |
| Hsp92II | CATG | 3 cut(s) | 21, 310, 400 |
| HspAI | GCGC | 2 cut(s) | 180, 182 |
| KroI | GCCGGC | 1 cut(s) | 41 |
| KroNI | GCCGGC | 1 cut(s) | 43 |
| KspAI | GTTAAC | 1 cut(s) | 214 |
| Kzo9I | GATC | 4 cut(s) | 98, 230, 297, 705 |
| LmnI | GCTCC | 3 cut(s) | 38, 103, 507 |
| Lsp1109I | GCAGC | 3 cut(s) | 118, 209, 297 |
| LweI | GCATC | 1 cut(s) | 355 |
| MaeI | CTAG | 5 cut(s) | 152, 263, 368, 387, 599 |
| MaeII | ACGT | 1 cut(s) | 573 |
| MaeIII | GTNAC | 3 cut(s) | 56, 139, 578 |
| MalI | GATC | 4 cut(s) | 100, 232, 299, 707 |
| MboI | GATC | 4 cut(s) | 98, 230, 297, 705 |
| MboII | GAAGA | 4 cut(s) | 536, 539, 569, 742 |
| MflI | RGATCY | 1 cut(s) | 230 |
| MluCI | AATT | 6 cut(s) | 76, 270, 363, 642, 684, 689 |
| MlyI | GAGTC | 3 cut(s) | 475, 575, 727 |
| MmeI | TCCRAC | 1 cut(s) | 16 |
| MnlI | CCTC | 7 cut(s) | 135, 159, 227, 245, 442, 629, 756 |
| MroNI | GCCGGC | 1 cut(s) | 41 |
| MroXI | GAANNNNTTC | 1 cut(s) | 666 |
| MseI | TTAA | 7 cut(s) | 113, 213, 269, 635, 675, 683, 687 |
| MslI | CAYNNNNRTG | 2 cut(s) | 476, 492 |
| MspI | CCGG | 1 cut(s) | 42 |
| MspR9I | CCNGG | 1 cut(s) | 392 |
| MvaI | CCWGG | 1 cut(s) | 392 |
| MvnI | CGCG | 1 cut(s) | 182 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 168, 177, 181, 206, 428, 449, 458 |
| NaeI | GCCGGC | 1 cut(s) | 43 |
| NdeI | CATATG | 1 cut(s) | 489 |
| NdeII | GATC | 4 cut(s) | 98, 230, 297, 705 |
| NgoMIV | GCCGGC | 1 cut(s) | 41 |
| NlaIII | CATG | 3 cut(s) | 21, 310, 400 |
| NlaIV | GGNNCC | 1 cut(s) | 40 |
| NmuCI | GTSAC | 3 cut(s) | 56, 139, 578 |
| NspI | RCATGY | 1 cut(s) | 400 |
| PacI | TTAATTAA | 1 cut(s) | 687 |
| PaeR7I | CTCGAG | 1 cut(s) | 380 |
| PauI | GCGCGC | 1 cut(s) | 180 |
| PdiI | GCCGGC | 1 cut(s) | 43 |
| PdmI | GAANNNNTTC | 1 cut(s) | 666 |
| PfeI | GAWTC | 2 cut(s) | 70, 376 |
| PflFI | GACNNNGTC | 1 cut(s) | 32 |
| PkrI | GCNGC | 5 cut(s) | 25, 47, 108, 199, 312 |
| PleI | GAGTC | 3 cut(s) | 475, 575, 727 |
| PpsI | GAGTC | 3 cut(s) | 475, 575, 727 |
| PshBI | ATTAAT | 1 cut(s) | 269 |
| Psp6I | CCWGG | 1 cut(s) | 390 |
| PspFI | CCCAGC | 1 cut(s) | 176 |
| PspGI | CCWGG | 1 cut(s) | 390 |
| PspN4I | GGNNCC | 1 cut(s) | 40 |
| PspPI | GGNCC | 1 cut(s) | 21 |
| PstNI | CAGNNNCTG | 2 cut(s) | 172, 256 |
| PsuI | RGATCY | 1 cut(s) | 230 |
| PsyI | GACNNNGTC | 1 cut(s) | 32 |
| PteI | GCGCGC | 1 cut(s) | 180 |
| RsaI | GTAC | 1 cut(s) | 254 |
| RsaNI | GTAC | 1 cut(s) | 253 |
| RseI | CAYNNNNRTG | 2 cut(s) | 476, 492 |
| SaqAI | TTAA | 7 cut(s) | 113, 213, 269, 635, 675, 683, 687 |
| SatI | GCNGC | 5 cut(s) | 24, 46, 107, 198, 311 |
| Sau3AI | GATC | 4 cut(s) | 98, 230, 297, 705 |
| Sau96I | GGNCC | 1 cut(s) | 21 |
| SchI | GAGTC | 3 cut(s) | 475, 575, 727 |
| ScrFI | CCNGG | 1 cut(s) | 392 |
| SfaNI | GCATC | 1 cut(s) | 355 |
| Sfr274I | CTCGAG | 1 cut(s) | 380 |
| SlaI | CTCGAG | 1 cut(s) | 380 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 476, 492 |
| SmlI | CTYRAG | 3 cut(s) | 350, 380, 417 |
| SmoI | CTYRAG | 3 cut(s) | 350, 380, 417 |
| Sse9I | AATT | 6 cut(s) | 76, 270, 363, 642, 684, 689 |
| SsiI | CCGC | 6 cut(s) | 24, 45, 48, 280, 340, 622 |
| SspMI | CTAG | 5 cut(s) | 152, 263, 368, 387, 599 |
| StyD4I | CCNGG | 1 cut(s) | 390 |
| TaaI | ACNGT | 2 cut(s) | 168, 406 |
| TaiI | ACGT | 1 cut(s) | 576 |
| TaqI | TCGA | 4 cut(s) | 225, 300, 381, 555 |
| TasI | AATT | 6 cut(s) | 76, 270, 363, 642, 684, 689 |
| TauI | GCSGC | 2 cut(s) | 26, 48 |
| TfiI | GAWTC | 2 cut(s) | 70, 376 |
| Tru1I | TTAA | 7 cut(s) | 113, 213, 269, 635, 675, 683, 687 |
| Tru9I | TTAA | 7 cut(s) | 113, 213, 269, 635, 675, 683, 687 |
| TscAI | CASTG | 1 cut(s) | 173 |
| TseFI | GTSAC | 3 cut(s) | 56, 139, 578 |
| TseI | GCWGC | 3 cut(s) | 106, 197, 310 |
| Tsp45I | GTSAC | 3 cut(s) | 56, 139, 578 |
| TspDTI | ATGAA | 2 cut(s) | 533, 537 |
| TspGWI | ACGGA | 1 cut(s) | 566 |
| TspRI | CASTG | 1 cut(s) | 173 |
| Tth111I | GACNNNGTC | 1 cut(s) | 32 |
| VspI | ATTAAT | 1 cut(s) | 269 |
| XapI | RAATTY | 2 cut(s) | 363, 689 |
| XbaI | TCTAGA | 1 cut(s) | 367 |
| XceI | RCATGY | 1 cut(s) | 400 |
| XhoI | CTCGAG | 1 cut(s) | 380 |
| XmnI | GAANNNNTTC | 1 cut(s) | 666 |
| XspI | CTAG | 5 cut(s) | 152, 263, 368, 387, 599 |