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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 926 |
| AciI | CCGC | 4 cut(s) | 42, 66, 436, 1068 |
| AcsI | RAATTY | 3 cut(s) | 218, 339, 785 |
| AcuI | CTGAAG | 1 cut(s) | 314 |
| AfaI | GTAC | 2 cut(s) | 253, 605 |
| AflIII | ACRYGT | 1 cut(s) | 248 |
| AgsI | TTSAA | 2 cut(s) | 733, 964 |
| AjiI | CACGTC | 1 cut(s) | 493 |
| AjnI | CCWGG | 2 cut(s) | 462, 486 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 645, 677 |
| AleI | CACNNNNGTG | 3 cut(s) | 34, 36, 723 |
| AluBI | AGCT | 4 cut(s) | 317, 512, 518, 1049 |
| AluI | AGCT | 4 cut(s) | 317, 512, 518, 1049 |
| Alw21I | GWGCWC | 1 cut(s) | 1051 |
| Alw26I | GTCTC | 3 cut(s) | 203, 239, 649 |
| ApeKI | GCWGC | 5 cut(s) | 11, 20, 76, 94, 536 |
| ApoI | RAATTY | 3 cut(s) | 218, 339, 785 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 762 |
| AsuII | TTCGAA | 1 cut(s) | 833 |
| BaeGI | GKGCMC | 1 cut(s) | 1036 |
| BanI | GGYRCC | 1 cut(s) | 926 |
| BanII | GRGCYC | 1 cut(s) | 1051 |
| BauI | CACGAG | 2 cut(s) | 130, 1050 |
| BbsI | GAAGAC | 2 cut(s) | 630, 833 |
| Bbv12I | GWGCWC | 1 cut(s) | 1051 |
| BbvI | GCAGC | 4 cut(s) | 32, 63, 106, 548 |
| BccI | CCATC | 4 cut(s) | 449, 572, 699, 954 |
| BciT130I | CCWGG | 2 cut(s) | 464, 488 |
| BcoDI | GTCTC | 3 cut(s) | 203, 239, 649 |
| BfaI | CTAG | 3 cut(s) | 314, 318, 483 |
| BfmI | CTRYAG | 2 cut(s) | 18, 55 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 545 |
| BisI | GCNGC | 7 cut(s) | 12, 21, 42, 66, 77, 95, 537 |
| BlsI | GCNGC | 7 cut(s) | 13, 22, 43, 67, 78, 96, 538 |
| Bme1390I | CCNGG | 2 cut(s) | 464, 488 |
| BmgBI | CACGTC | 1 cut(s) | 493 |
| BmiI | GGNNCC | 3 cut(s) | 154, 869, 928 |
| BmrFI | CCNGG | 2 cut(s) | 464, 488 |
| BmsI | GCATC | 2 cut(s) | 451, 799 |
| BpiI | GAAGAC | 2 cut(s) | 630, 833 |
| BpmI | CTGGAG | 1 cut(s) | 584 |
| Bpu14I | TTCGAA | 1 cut(s) | 833 |
| BpuEI | CTTGAG | 3 cut(s) | 431, 461, 498 |
| Bsa29I | ATCGAT | 1 cut(s) | 838 |
| BsaI | GGTCTC | 1 cut(s) | 649 |
| Bse1I | ACTGG | 1 cut(s) | 601 |
| Bse3DI | GCAATG | 2 cut(s) | 60, 910 |
| BseBI | CCWGG | 2 cut(s) | 464, 488 |
| BseCI | ATCGAT | 1 cut(s) | 838 |
| BseGI | GGATG | 2 cut(s) | 567, 595 |
| BseMI | GCAATG | 2 cut(s) | 60, 910 |
| BseMII | CTCAG | 1 cut(s) | 1014 |
| BseNI | ACTGG | 1 cut(s) | 601 |
| BseSI | GKGCMC | 1 cut(s) | 1036 |
| BseXI | GCAGC | 4 cut(s) | 32, 63, 106, 548 |
| BsgI | GTGCAG | 1 cut(s) | 132 |
| BshNI | GGYRCC | 1 cut(s) | 926 |
| BshVI | ATCGAT | 1 cut(s) | 838 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1051 |
| BsmAI | GTCTC | 3 cut(s) | 203, 239, 649 |
| Bso31I | GGTCTC | 1 cut(s) | 649 |
| Bsp119I | TTCGAA | 1 cut(s) | 833 |
| Bsp1286I | GDGCHC | 2 cut(s) | 1036, 1051 |
| Bsp1407I | TGTACA | 1 cut(s) | 251 |
| Bsp143I | GATC | 3 cut(s) | 115, 333, 801 |
| BspACI | CCGC | 4 cut(s) | 42, 66, 436, 1068 |
| BspCNI | CTCAG | 1 cut(s) | 1015 |
| BspDI | ATCGAT | 1 cut(s) | 838 |
| BspLI | GGNNCC | 3 cut(s) | 154, 869, 928 |
| BspMAI | CTGCAG | 1 cut(s) | 22 |
| BspT104I | TTCGAA | 1 cut(s) | 833 |
| BspT107I | GGYRCC | 1 cut(s) | 926 |
| BspTNI | GGTCTC | 1 cut(s) | 649 |
| BsrDI | GCAATG | 2 cut(s) | 60, 910 |
| BsrGI | TGTACA | 1 cut(s) | 251 |
| BsrI | ACTGG | 1 cut(s) | 601 |
| BssMI | GATC | 3 cut(s) | 115, 333, 801 |
| BssSI | CACGAG | 2 cut(s) | 130, 1050 |
| Bst2BI | CACGAG | 2 cut(s) | 130, 1050 |
| Bst2UI | CCWGG | 2 cut(s) | 464, 488 |
| Bst4CI | ACNGT | 2 cut(s) | 502, 848 |
| Bst6I | CTCTTC | 1 cut(s) | 206 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 26 |
| BstAUI | TGTACA | 1 cut(s) | 251 |
| BstBI | TTCGAA | 1 cut(s) | 833 |
| BstC8I | GCNNGC | 7 cut(s) | 70, 74, 99, 268, 300, 440, 510 |
| BstDEI | CTNAG | 2 cut(s) | 541, 1023 |
| BstF5I | GGATG | 2 cut(s) | 567, 595 |
| BstKTI | GATC | 3 cut(s) | 118, 336, 804 |
| BstMAI | GTCTC | 3 cut(s) | 203, 239, 649 |
| BstMBI | GATC | 3 cut(s) | 115, 333, 801 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 17, 20, 26, 57, 524, 533, 545, 554, 965 |
| BstNI | CCWGG | 2 cut(s) | 464, 488 |
| BstNSI | RCATGY | 2 cut(s) | 252, 270 |
| BstSCI | CCNGG | 2 cut(s) | 462, 486 |
| BstSFI | CTRYAG | 2 cut(s) | 18, 55 |
| BstSLI | GKGCMC | 1 cut(s) | 1036 |
| BstV1I | GCAGC | 4 cut(s) | 32, 63, 106, 548 |
| BstV2I | GAAGAC | 2 cut(s) | 630, 833 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 923 |
| Bsu15I | ATCGAT | 1 cut(s) | 838 |
| BsuTUI | ATCGAT | 1 cut(s) | 838 |
| BtgZI | GCGATG | 1 cut(s) | 827 |
| BtrI | CACGTC | 1 cut(s) | 493 |
| BtsCI | GGATG | 2 cut(s) | 567, 595 |
| Cac8I | GCNNGC | 7 cut(s) | 70, 74, 99, 268, 300, 440, 510 |
| ClaI | ATCGAT | 1 cut(s) | 838 |
| CseI | GACGC | 1 cut(s) | 965 |
| Csp6I | GTAC | 2 cut(s) | 252, 604 |
| CviAII | CATG | 3 cut(s) | 249, 267, 917 |
| CviQI | GTAC | 2 cut(s) | 252, 604 |
| DdeI | CTNAG | 2 cut(s) | 541, 1023 |
| DpnI | GATC | 3 cut(s) | 117, 335, 803 |
| DpnII | GATC | 3 cut(s) | 115, 333, 801 |
| Eam1104I | CTCTTC | 1 cut(s) | 206 |
| EarI | CTCTTC | 1 cut(s) | 206 |
| EciI | GGCGGA | 1 cut(s) | 425 |
| Ecl136II | GAGCTC | 1 cut(s) | 1049 |
| Eco24I | GRGCYC | 1 cut(s) | 1051 |
| Eco31I | GGTCTC | 1 cut(s) | 649 |
| Eco32I | GATATC | 1 cut(s) | 433 |
| Eco53kI | GAGCTC | 1 cut(s) | 1049 |
| Eco57I | CTGAAG | 1 cut(s) | 314 |
| EcoICRI | GAGCTC | 1 cut(s) | 1049 |
| EcoRI | GAATTC | 1 cut(s) | 785 |
| EcoRII | CCWGG | 2 cut(s) | 462, 486 |
| EcoRV | GATATC | 1 cut(s) | 433 |
| EcoT38I | GRGCYC | 1 cut(s) | 1051 |
| FaeI | CATG | 3 cut(s) | 252, 270, 920 |
| FatI | CATG | 3 cut(s) | 248, 266, 916 |
| FauNDI | CATATG | 1 cut(s) | 585 |
| Fnu4HI | GCNGC | 7 cut(s) | 12, 21, 42, 66, 77, 95, 537 |
| FokI | GGATG | 2 cut(s) | 554, 602 |
| FriOI | GRGCYC | 1 cut(s) | 1051 |
| Fsp4HI | GCNGC | 7 cut(s) | 12, 21, 42, 66, 77, 95, 537 |
| FspBI | CTAG | 3 cut(s) | 314, 318, 483 |
| GluI | GCNGC | 7 cut(s) | 12, 21, 42, 66, 77, 95, 537 |
| GsuI | CTGGAG | 1 cut(s) | 584 |
| HgaI | GACGC | 1 cut(s) | 965 |
| Hin1II | CATG | 3 cut(s) | 252, 270, 920 |
| HindIII | AAGCTT | 1 cut(s) | 516 |
| HinfI | GANTC | 7 cut(s) | 235, 459, 472, 577, 593, 677, 835 |
| Hpy166II | GTNNAC | 2 cut(s) | 254, 881 |
| Hpy188I | TCNGA | 8 cut(s) | 152, 160, 210, 325, 333, 409, 757, 1024 |
| Hpy188III | TCNNGA | 6 cut(s) | 130, 428, 689, 743, 1008, 1052 |
| Hpy8I | GTNNAC | 2 cut(s) | 254, 881 |
| HpyAV | CCTTC | 1 cut(s) | 357 |
| HpyCH4III | ACNGT | 2 cut(s) | 502, 848 |
| HpyCH4IV | ACGT | 3 cut(s) | 492, 669, 883 |
| HpyCH4V | TGCA | 7 cut(s) | 20, 29, 86, 113, 282, 298, 1044 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 17, 20, 26, 57, 524, 533, 545, 554, 965 |
| HpyF3I | CTNAG | 2 cut(s) | 541, 1023 |
| HpySE526I | ACGT | 3 cut(s) | 492, 669, 883 |
| Hsp92II | CATG | 3 cut(s) | 252, 270, 920 |
| Kzo9I | GATC | 3 cut(s) | 115, 333, 801 |
| LmnI | GCTCC | 2 cut(s) | 391, 603 |
| Lsp1109I | GCAGC | 4 cut(s) | 32, 63, 106, 548 |
| LweI | GCATC | 2 cut(s) | 451, 799 |
| MaeI | CTAG | 3 cut(s) | 314, 318, 483 |
| MaeII | ACGT | 3 cut(s) | 492, 669, 883 |
| MaeIII | GTNAC | 4 cut(s) | 362, 674, 842, 1063 |
| MalI | GATC | 3 cut(s) | 117, 335, 803 |
| MboI | GATC | 3 cut(s) | 115, 333, 801 |
| MboII | GAAGA | 8 cut(s) | 166, 193, 335, 632, 635, 665, 838, 1067 |
| MfeI | CAATTG | 2 cut(s) | 229, 399 |
| MhlI | GDGCHC | 2 cut(s) | 1036, 1051 |
| MluCI | AATT | 6 cut(s) | 218, 229, 339, 374, 399, 785 |
| MlyI | GAGTC | 3 cut(s) | 244, 571, 671 |
| MnlI | CCTC | 6 cut(s) | 166, 538, 889, 893, 919, 981 |
| MroXI | GAANNNNTTC | 1 cut(s) | 762 |
| MseI | TTAA | 2 cut(s) | 771, 779 |
| MslI | CAYNNNNRTG | 8 cut(s) | 34, 36, 572, 588, 698, 723, 921, 951 |
| MspR9I | CCNGG | 2 cut(s) | 464, 488 |
| MunI | CAATTG | 2 cut(s) | 229, 399 |
| MvaI | CCWGG | 2 cut(s) | 464, 488 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 17, 20, 26, 57, 524, 533, 545, 554, 965 |
| NdeI | CATATG | 1 cut(s) | 585 |
| NdeII | GATC | 3 cut(s) | 115, 333, 801 |
| NlaIII | CATG | 3 cut(s) | 252, 270, 920 |
| NlaIV | GGNNCC | 3 cut(s) | 154, 869, 928 |
| NmuCI | GTSAC | 1 cut(s) | 674 |
| NspI | RCATGY | 2 cut(s) | 252, 270 |
| NspV | TTCGAA | 1 cut(s) | 833 |
| OliI | CACNNNNGTG | 3 cut(s) | 34, 36, 723 |
| PaeI | GCATGC | 1 cut(s) | 270 |
| PciI | ACATGT | 1 cut(s) | 248 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 844 |
| PdmI | GAANNNNTTC | 1 cut(s) | 762 |
| PfeI | GAWTC | 4 cut(s) | 459, 472, 593, 835 |
| PfoI | TCCNGGA | 1 cut(s) | 462 |
| PkrI | GCNGC | 7 cut(s) | 13, 22, 43, 67, 78, 96, 538 |
| PleI | GAGTC | 3 cut(s) | 243, 571, 671 |
| PpsI | GAGTC | 3 cut(s) | 243, 571, 671 |
| PscI | ACATGT | 1 cut(s) | 248 |
| Psp124BI | GAGCTC | 1 cut(s) | 1051 |
| Psp6I | CCWGG | 2 cut(s) | 462, 486 |
| PspGI | CCWGG | 2 cut(s) | 462, 486 |
| PspN4I | GGNNCC | 3 cut(s) | 154, 869, 928 |
| PstI | CTGCAG | 1 cut(s) | 22 |
| RsaI | GTAC | 2 cut(s) | 253, 605 |
| RsaNI | GTAC | 2 cut(s) | 252, 604 |
| RseI | CAYNNNNRTG | 8 cut(s) | 34, 36, 572, 588, 698, 723, 921, 951 |
| SacI | GAGCTC | 1 cut(s) | 1051 |
| SaqAI | TTAA | 2 cut(s) | 771, 779 |
| SatI | GCNGC | 7 cut(s) | 12, 21, 42, 66, 77, 95, 537 |
| Sau3AI | GATC | 3 cut(s) | 115, 333, 801 |
| SchI | GAGTC | 3 cut(s) | 244, 571, 671 |
| ScrFI | CCNGG | 2 cut(s) | 464, 488 |
| SduI | GDGCHC | 2 cut(s) | 1036, 1051 |
| SfaNI | GCATC | 2 cut(s) | 451, 799 |
| SfcI | CTRYAG | 2 cut(s) | 18, 55 |
| SfuI | TTCGAA | 1 cut(s) | 833 |
| SmiMI | CAYNNNNRTG | 8 cut(s) | 34, 36, 572, 588, 698, 723, 921, 951 |
| SmlI | CTYRAG | 3 cut(s) | 446, 476, 513 |
| SmoI | CTYRAG | 3 cut(s) | 446, 476, 513 |
| SphI | GCATGC | 1 cut(s) | 270 |
| Sse9I | AATT | 6 cut(s) | 218, 229, 339, 374, 399, 785 |
| SsiI | CCGC | 4 cut(s) | 42, 66, 436, 1068 |
| SspMI | CTAG | 3 cut(s) | 314, 318, 483 |
| SstI | GAGCTC | 1 cut(s) | 1051 |
| StyD4I | CCNGG | 2 cut(s) | 462, 486 |
| TaaI | ACNGT | 2 cut(s) | 502, 848 |
| TaiI | ACGT | 3 cut(s) | 495, 672, 886 |
| TaqI | TCGA | 5 cut(s) | 651, 833, 838, 987, 1009 |
| TasI | AATT | 6 cut(s) | 218, 229, 339, 374, 399, 785 |
| TatI | WGTACW | 1 cut(s) | 251 |
| TauI | GCSGC | 2 cut(s) | 44, 68 |
| TfiI | GAWTC | 4 cut(s) | 459, 472, 593, 835 |
| Tru1I | TTAA | 2 cut(s) | 771, 779 |
| Tru9I | TTAA | 2 cut(s) | 771, 779 |
| TseFI | GTSAC | 1 cut(s) | 674 |
| TseI | GCWGC | 5 cut(s) | 11, 20, 76, 94, 536 |
| Tsp45I | GTSAC | 1 cut(s) | 674 |
| TspDTI | ATGAA | 6 cut(s) | 166, 177, 179, 339, 629, 633 |
| TspGWI | ACGGA | 2 cut(s) | 662, 880 |
| XapI | RAATTY | 3 cut(s) | 218, 339, 785 |
| XceI | RCATGY | 2 cut(s) | 252, 270 |
| XmnI | GAANNNNTTC | 1 cut(s) | 762 |
| XspI | CTAG | 3 cut(s) | 314, 318, 483 |