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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 30 |
| AccB1I | GGYRCC | 1 cut(s) | 789 |
| AccI | GTMKAC | 1 cut(s) | 168 |
| AccII | CGCG | 1 cut(s) | 774 |
| AciI | CCGC | 5 cut(s) | 41, 66, 81, 234, 466 |
| AclWI | GGATC | 1 cut(s) | 726 |
| AcsI | RAATTY | 1 cut(s) | 533 |
| AcyI | GRCGYC | 1 cut(s) | 790 |
| AfaI | GTAC | 1 cut(s) | 353 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 40, 785 |
| AflIII | ACRYGT | 1 cut(s) | 163 |
| AgsI | TTSAA | 1 cut(s) | 481 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 129, 161 |
| AleI | CACNNNNGTG | 1 cut(s) | 36 |
| AluBI | AGCT | 4 cut(s) | 199, 260, 667, 677 |
| AluI | AGCT | 4 cut(s) | 199, 260, 667, 677 |
| Alw21I | GWGCWC | 1 cut(s) | 669 |
| Alw26I | GTCTC | 2 cut(s) | 154, 397 |
| AlwI | GGATC | 1 cut(s) | 726 |
| AoxI | GGCC | 1 cut(s) | 42 |
| ApeKI | GCWGC | 6 cut(s) | 11, 20, 57, 83, 94, 284 |
| ApoI | RAATTY | 1 cut(s) | 533 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 578 |
| AspLEI | GCGC | 3 cut(s) | 31, 776, 792 |
| AspS9I | GGNCC | 1 cut(s) | 836 |
| AsuII | TTCGAA | 1 cut(s) | 176 |
| AvaII | GGWCC | 1 cut(s) | 836 |
| BanI | GGYRCC | 1 cut(s) | 789 |
| BanII | GRGCYC | 1 cut(s) | 669 |
| BbsI | GAAGAC | 2 cut(s) | 378, 581 |
| Bbv12I | GWGCWC | 1 cut(s) | 669 |
| BbvI | GCAGC | 5 cut(s) | 32, 69, 70, 106, 296 |
| BccI | CCATC | 3 cut(s) | 320, 447, 601 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 620, 654 |
| BcoDI | GTCTC | 2 cut(s) | 154, 397 |
| BfaI | CTAG | 2 cut(s) | 102, 443 |
| BfmI | CTRYAG | 2 cut(s) | 18, 55 |
| BfoI | RGCGCY | 1 cut(s) | 793 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 293 |
| BisI | GCNGC | 8 cut(s) | 12, 21, 42, 58, 66, 84, 95, 285 |
| BlsI | GCNGC | 8 cut(s) | 13, 22, 43, 59, 67, 85, 96, 286 |
| Bme18I | GGWCC | 1 cut(s) | 836 |
| BmgT120I | GGNCC | 1 cut(s) | 836 |
| BmiI | GGNNCC | 1 cut(s) | 791 |
| BpiI | GAAGAC | 2 cut(s) | 378, 581 |
| BpmI | CTGGAG | 1 cut(s) | 332 |
| Bpu14I | TTCGAA | 1 cut(s) | 176 |
| BpuEI | CTTGAG | 1 cut(s) | 246 |
| Bsa29I | ATCGAT | 1 cut(s) | 630 |
| BsaHI | GRCGYC | 1 cut(s) | 790 |
| BsaI | GGTCTC | 1 cut(s) | 397 |
| BsaJI | CCNNGG | 2 cut(s) | 267, 735 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 40, 785 |
| Bse1I | ACTGG | 2 cut(s) | 237, 349 |
| Bse3DI | GCAATG | 1 cut(s) | 60 |
| BseCI | ATCGAT | 1 cut(s) | 630 |
| BseDI | CCNNGG | 2 cut(s) | 267, 735 |
| BseGI | GGATG | 4 cut(s) | 315, 343, 705, 833 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 40, 785 |
| BseMI | GCAATG | 1 cut(s) | 60 |
| BseNI | ACTGG | 2 cut(s) | 237, 349 |
| BseXI | GCAGC | 5 cut(s) | 32, 69, 70, 106, 296 |
| BsgI | GTGCAG | 1 cut(s) | 132 |
| Bsh1236I | CGCG | 1 cut(s) | 774 |
| BshFI | GGCC | 1 cut(s) | 44 |
| BshNI | GGYRCC | 1 cut(s) | 789 |
| BshVI | ATCGAT | 1 cut(s) | 630 |
| BsiHKAI | GWGCWC | 1 cut(s) | 669 |
| BslFI | GGGAC | 1 cut(s) | 581 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 40, 785 |
| BsmAI | GTCTC | 2 cut(s) | 154, 397 |
| BsmFI | GGGAC | 1 cut(s) | 581 |
| BsnI | GGCC | 1 cut(s) | 44 |
| Bso31I | GGTCTC | 1 cut(s) | 397 |
| Bsp119I | TTCGAA | 1 cut(s) | 176 |
| Bsp1286I | GDGCHC | 1 cut(s) | 669 |
| Bsp143I | GATC | 3 cut(s) | 115, 549, 731 |
| BspACI | CCGC | 5 cut(s) | 41, 66, 81, 234, 466 |
| BspANI | GGCC | 1 cut(s) | 44 |
| BspDI | ATCGAT | 1 cut(s) | 630 |
| BspFNI | CGCG | 1 cut(s) | 774 |
| BspHI | TCATGA | 1 cut(s) | 661 |
| BspLI | GGNNCC | 1 cut(s) | 791 |
| BspMAI | CTGCAG | 2 cut(s) | 22, 59 |
| BspPI | GGATC | 1 cut(s) | 726 |
| BspT104I | TTCGAA | 1 cut(s) | 176 |
| BspT107I | GGYRCC | 1 cut(s) | 789 |
| BspTNI | GGTCTC | 1 cut(s) | 397 |
| BsrDI | GCAATG | 1 cut(s) | 60 |
| BsrI | ACTGG | 2 cut(s) | 237, 349 |
| BssECI | CCNNGG | 2 cut(s) | 267, 735 |
| BssMI | GATC | 3 cut(s) | 115, 549, 731 |
| BssNAI | GTATAC | 1 cut(s) | 169 |
| BssNI | GRCGYC | 1 cut(s) | 790 |
| BssT1I | CCWWGG | 1 cut(s) | 267 |
| Bst1107I | GTATAC | 1 cut(s) | 169 |
| BstACI | GRCGYC | 1 cut(s) | 790 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 26 |
| BstBI | TTCGAA | 1 cut(s) | 176 |
| BstC8I | GCNNGC | 5 cut(s) | 70, 81, 99, 197, 258 |
| BstDEI | CTNAG | 3 cut(s) | 289, 615, 812 |
| BstDSI | CCRYGG | 1 cut(s) | 735 |
| BstF5I | GGATG | 4 cut(s) | 315, 343, 705, 833 |
| BstFNI | CGCG | 1 cut(s) | 774 |
| BstH2I | RGCGCY | 1 cut(s) | 793 |
| BstHHI | GCGC | 3 cut(s) | 31, 776, 792 |
| BstKTI | GATC | 3 cut(s) | 118, 552, 734 |
| BstMAI | GTCTC | 2 cut(s) | 154, 397 |
| BstMBI | GATC | 3 cut(s) | 115, 549, 731 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 17, 20, 26, 57, 272, 281, 293, 302, 796 |
| BstNSI | RCATGY | 1 cut(s) | 167 |
| BstSFI | CTRYAG | 2 cut(s) | 18, 55 |
| BstUI | CGCG | 1 cut(s) | 774 |
| BstV1I | GCAGC | 5 cut(s) | 32, 69, 70, 106, 296 |
| BstV2I | GAAGAC | 2 cut(s) | 378, 581 |
| BstX2I | RGATCY | 1 cut(s) | 731 |
| BstYI | RGATCY | 1 cut(s) | 731 |
| BstZ17I | GTATAC | 1 cut(s) | 169 |
| Bsu15I | ATCGAT | 1 cut(s) | 630 |
| BsuRI | GGCC | 1 cut(s) | 44 |
| BsuTUI | ATCGAT | 1 cut(s) | 630 |
| BtgI | CCRYGG | 1 cut(s) | 735 |
| BtgZI | GCGATG | 1 cut(s) | 575 |
| BtsCI | GGATG | 4 cut(s) | 315, 343, 705, 833 |
| BtsIMutI | CAGTG | 2 cut(s) | 223, 244 |
| Cac8I | GCNNGC | 5 cut(s) | 70, 81, 99, 197, 258 |
| CciI | TCATGA | 1 cut(s) | 661 |
| CfoI | GCGC | 3 cut(s) | 31, 776, 792 |
| Cfr13I | GGNCC | 1 cut(s) | 836 |
| ClaI | ATCGAT | 1 cut(s) | 630 |
| Csp6I | GTAC | 1 cut(s) | 352 |
| CviAII | CATG | 3 cut(s) | 164, 662, 698 |
| CviQI | GTAC | 1 cut(s) | 352 |
| DdeI | CTNAG | 3 cut(s) | 289, 615, 812 |
| DinI | GGCGCC | 1 cut(s) | 791 |
| DpnI | GATC | 3 cut(s) | 117, 551, 733 |
| DpnII | GATC | 3 cut(s) | 115, 549, 731 |
| EciI | GGCGGA | 1 cut(s) | 223 |
| Ecl136II | GAGCTC | 1 cut(s) | 667 |
| Eco130I | CCWWGG | 1 cut(s) | 267 |
| Eco24I | GRGCYC | 1 cut(s) | 669 |
| Eco31I | GGTCTC | 1 cut(s) | 397 |
| Eco32I | GATATC | 1 cut(s) | 231 |
| Eco47I | GGWCC | 1 cut(s) | 836 |
| Eco53kI | GAGCTC | 1 cut(s) | 667 |
| EcoICRI | GAGCTC | 1 cut(s) | 667 |
| EcoRI | GAATTC | 1 cut(s) | 533 |
| EcoRV | GATATC | 1 cut(s) | 231 |
| EcoT14I | CCWWGG | 1 cut(s) | 267 |
| EcoT38I | GRGCYC | 1 cut(s) | 669 |
| EgeI | GGCGCC | 1 cut(s) | 791 |
| EheI | GGCGCC | 1 cut(s) | 791 |
| ErhI | CCWWGG | 1 cut(s) | 267 |
| FaeI | CATG | 3 cut(s) | 167, 665, 701 |
| FaqI | GGGAC | 1 cut(s) | 581 |
| FatI | CATG | 3 cut(s) | 163, 661, 697 |
| FauI | CCCGC | 1 cut(s) | 88 |
| FauNDI | CATATG | 1 cut(s) | 333 |
| FblI | GTMKAC | 1 cut(s) | 168 |
| Fnu4HI | GCNGC | 8 cut(s) | 12, 21, 42, 58, 66, 84, 95, 285 |
| FokI | GGATG | 4 cut(s) | 302, 350, 692, 840 |
| FriOI | GRGCYC | 1 cut(s) | 669 |
| Fsp4HI | GCNGC | 8 cut(s) | 12, 21, 42, 58, 66, 84, 95, 285 |
| FspBI | CTAG | 2 cut(s) | 102, 443 |
| FspI | TGCGCA | 1 cut(s) | 30 |
| GlaI | GCGC | 3 cut(s) | 30, 775, 791 |
| GluI | GCNGC | 8 cut(s) | 12, 21, 42, 58, 66, 84, 95, 285 |
| GsuI | CTGGAG | 1 cut(s) | 332 |
| HaeII | RGCGCY | 1 cut(s) | 793 |
| HaeIII | GGCC | 1 cut(s) | 44 |
| HhaI | GCGC | 3 cut(s) | 31, 776, 792 |
| Hin1I | GRCGYC | 1 cut(s) | 790 |
| Hin1II | CATG | 3 cut(s) | 167, 665, 701 |
| Hin6I | GCGC | 3 cut(s) | 29, 774, 790 |
| HinP1I | GCGC | 3 cut(s) | 29, 774, 790 |
| HinfI | GANTC | 6 cut(s) | 150, 325, 341, 425, 627, 648 |
| Hpy166II | GTNNAC | 1 cut(s) | 169 |
| Hpy188I | TCNGA | 2 cut(s) | 439, 756 |
| Hpy188III | TCNNGA | 4 cut(s) | 226, 491, 662, 729 |
| Hpy8I | GTNNAC | 1 cut(s) | 169 |
| HpyAV | CCTTC | 2 cut(s) | 375, 854 |
| HpyCH4IV | ACGT | 1 cut(s) | 417 |
| HpyCH4V | TGCA | 7 cut(s) | 20, 57, 86, 113, 211, 516, 641 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 17, 20, 26, 57, 272, 281, 293, 302, 796 |
| HpyF3I | CTNAG | 3 cut(s) | 289, 615, 812 |
| HpySE526I | ACGT | 1 cut(s) | 417 |
| Hsp92I | GRCGYC | 1 cut(s) | 790 |
| Hsp92II | CATG | 3 cut(s) | 167, 665, 701 |
| HspAI | GCGC | 3 cut(s) | 29, 774, 790 |
| KasI | GGCGCC | 1 cut(s) | 789 |
| Kzo9I | GATC | 3 cut(s) | 115, 549, 731 |
| LmnI | GCTCC | 1 cut(s) | 351 |
| LpnPI | CCDG | 8 cut(s) | 30, 67, 86, 219, 250, 362, 391, 819 |
| Lsp1109I | GCAGC | 5 cut(s) | 32, 69, 70, 106, 296 |
| MaeI | CTAG | 2 cut(s) | 102, 443 |
| MaeII | ACGT | 1 cut(s) | 417 |
| MaeIII | GTNAC | 2 cut(s) | 422, 634 |
| MalI | GATC | 3 cut(s) | 117, 551, 733 |
| MboI | GATC | 3 cut(s) | 115, 549, 731 |
| MboII | GAAGA | 5 cut(s) | 380, 383, 413, 586, 727 |
| MflI | RGATCY | 1 cut(s) | 731 |
| MhlI | GDGCHC | 1 cut(s) | 669 |
| MluCI | AATT | 3 cut(s) | 533, 724, 763 |
| Mly113I | GGCGCC | 1 cut(s) | 790 |
| MlyI | GAGTC | 3 cut(s) | 159, 319, 419 |
| MnlI | CCTC | 3 cut(s) | 286, 473, 779 |
| MroXI | GAANNNNTTC | 1 cut(s) | 578 |
| MseI | TTAA | 2 cut(s) | 519, 527 |
| MslI | CAYNNNNRTG | 6 cut(s) | 36, 216, 320, 336, 710, 826 |
| MspA1I | CMGCKG | 1 cut(s) | 83 |
| MvnI | CGCG | 1 cut(s) | 774 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 17, 20, 26, 57, 272, 281, 293, 302, 796 |
| NarI | GGCGCC | 1 cut(s) | 790 |
| NdeI | CATATG | 1 cut(s) | 333 |
| NdeII | GATC | 3 cut(s) | 115, 549, 731 |
| NlaIII | CATG | 3 cut(s) | 167, 665, 701 |
| NlaIV | GGNNCC | 1 cut(s) | 791 |
| NmuCI | GTSAC | 1 cut(s) | 422 |
| NsbI | TGCGCA | 1 cut(s) | 30 |
| NspI | RCATGY | 1 cut(s) | 167 |
| NspV | TTCGAA | 1 cut(s) | 176 |
| OliI | CACNNNNGTG | 1 cut(s) | 36 |
| PagI | TCATGA | 1 cut(s) | 661 |
| PciI | ACATGT | 1 cut(s) | 163 |
| PdmI | GAANNNNTTC | 1 cut(s) | 578 |
| PfeI | GAWTC | 3 cut(s) | 341, 627, 648 |
| PkrI | GCNGC | 8 cut(s) | 13, 22, 43, 59, 67, 85, 96, 286 |
| PleI | GAGTC | 3 cut(s) | 158, 319, 419 |
| PluTI | GGCGCC | 1 cut(s) | 793 |
| PpsI | GAGTC | 3 cut(s) | 158, 319, 419 |
| PscI | ACATGT | 1 cut(s) | 163 |
| Psp124BI | GAGCTC | 1 cut(s) | 669 |
| PspN4I | GGNNCC | 1 cut(s) | 791 |
| PspPI | GGNCC | 1 cut(s) | 836 |
| PstI | CTGCAG | 2 cut(s) | 22, 59 |
| PsuI | RGATCY | 1 cut(s) | 731 |
| RsaI | GTAC | 1 cut(s) | 353 |
| RsaNI | GTAC | 1 cut(s) | 352 |
| RseI | CAYNNNNRTG | 6 cut(s) | 36, 216, 320, 336, 710, 826 |
| SacI | GAGCTC | 1 cut(s) | 669 |
| SaqAI | TTAA | 2 cut(s) | 519, 527 |
| SatI | GCNGC | 8 cut(s) | 12, 21, 42, 58, 66, 84, 95, 285 |
| Sau3AI | GATC | 3 cut(s) | 115, 549, 731 |
| Sau96I | GGNCC | 1 cut(s) | 836 |
| SchI | GAGTC | 3 cut(s) | 159, 319, 419 |
| SduI | GDGCHC | 1 cut(s) | 669 |
| SetI | ASST | 9 cut(s) | 145, 201, 262, 420, 444, 659, 669, 679, 865 |
| SfcI | CTRYAG | 2 cut(s) | 18, 55 |
| SfoI | GGCGCC | 1 cut(s) | 791 |
| SfuI | TTCGAA | 1 cut(s) | 176 |
| SinI | GGWCC | 1 cut(s) | 836 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 36, 216, 320, 336, 710, 826 |
| SmlI | CTYRAG | 1 cut(s) | 261 |
| SmoI | CTYRAG | 1 cut(s) | 261 |
| Sse9I | AATT | 3 cut(s) | 533, 724, 763 |
| SsiI | CCGC | 5 cut(s) | 41, 66, 81, 234, 466 |
| SspDI | GGCGCC | 1 cut(s) | 789 |
| SspMI | CTAG | 2 cut(s) | 102, 443 |
| SstI | GAGCTC | 1 cut(s) | 669 |
| StyI | CCWWGG | 1 cut(s) | 267 |
| TaiI | ACGT | 1 cut(s) | 420 |
| TaqI | TCGA | 6 cut(s) | 135, 176, 399, 625, 630, 728 |
| TasI | AATT | 3 cut(s) | 533, 724, 763 |
| TauI | GCSGC | 2 cut(s) | 44, 68 |
| TfiI | GAWTC | 3 cut(s) | 341, 627, 648 |
| Tru1I | TTAA | 2 cut(s) | 519, 527 |
| Tru9I | TTAA | 2 cut(s) | 519, 527 |
| TscAI | CASTG | 2 cut(s) | 223, 244 |
| TseFI | GTSAC | 1 cut(s) | 422 |
| TseI | GCWGC | 6 cut(s) | 11, 20, 57, 83, 94, 284 |
| Tsp45I | GTSAC | 1 cut(s) | 422 |
| TspDTI | ATGAA | 4 cut(s) | 377, 381, 650, 695 |
| TspGWI | ACGGA | 2 cut(s) | 410, 724 |
| TspRI | CASTG | 2 cut(s) | 223, 244 |
| VpaK11BI | GGWCC | 1 cut(s) | 836 |
| XapI | RAATTY | 1 cut(s) | 533 |
| XceI | RCATGY | 1 cut(s) | 167 |
| XmiI | GTMKAC | 1 cut(s) | 168 |
| XmnI | GAANNNNTTC | 1 cut(s) | 578 |
| XspI | CTAG | 2 cut(s) | 102, 443 |