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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 450, 495 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 558 |
| AccB1I | GGYRCC | 1 cut(s) | 671 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 258 |
| AciI | CCGC | 4 cut(s) | 352, 592, 605, 834 |
| AclWI | GGATC | 2 cut(s) | 128, 383 |
| AcuI | CTGAAG | 1 cut(s) | 378 |
| AcvI | CACGTG | 2 cut(s) | 614, 632 |
| AdeI | CACNNNGTG | 2 cut(s) | 617, 701 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 64, 258, 509, 510, 633, 662, 685 |
| AflIII | ACRYGT | 2 cut(s) | 611, 629 |
| AgsI | TTSAA | 5 cut(s) | 96, 179, 208, 456, 805 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 275 |
| AjnI | CCWGG | 1 cut(s) | 655 |
| AluBI | AGCT | 5 cut(s) | 236, 292, 394, 416, 809 |
| AluI | AGCT | 5 cut(s) | 236, 292, 394, 416, 809 |
| Alw21I | GWGCWC | 2 cut(s) | 706, 825 |
| Alw44I | GTGCAC | 2 cut(s) | 702, 821 |
| AlwI | GGATC | 2 cut(s) | 128, 383 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 137 |
| AoxI | GGCC | 1 cut(s) | 458 |
| ApaLI | GTGCAC | 2 cut(s) | 702, 821 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 237 |
| AspA2I | CCTAGG | 1 cut(s) | 683 |
| AspLEI | GCGC | 1 cut(s) | 195 |
| AspS9I | GGNCC | 2 cut(s) | 459, 560 |
| AsuHPI | GGTGA | 4 cut(s) | 77, 233, 781, 785 |
| AvaII | GGWCC | 1 cut(s) | 560 |
| AvrII | CCTAGG | 1 cut(s) | 683 |
| BaeGI | GKGCMC | 2 cut(s) | 706, 825 |
| BanI | GGYRCC | 1 cut(s) | 671 |
| BauI | CACGAG | 2 cut(s) | 379, 437 |
| BbrPI | CACGTG | 2 cut(s) | 614, 632 |
| Bbv12I | GWGCWC | 2 cut(s) | 706, 825 |
| BccI | CCATC | 2 cut(s) | 750, 792 |
| BciT130I | CCWGG | 1 cut(s) | 657 |
| BciVI | GTATCC | 1 cut(s) | 601 |
| BfaI | CTAG | 3 cut(s) | 15, 369, 684 |
| BfmI | CTRYAG | 2 cut(s) | 245, 411 |
| BfuI | GTATCC | 1 cut(s) | 601 |
| BisI | GCNGC | 1 cut(s) | 834 |
| BlnI | CCTAGG | 1 cut(s) | 683 |
| BlsI | GCNGC | 1 cut(s) | 835 |
| Bme1390I | CCNGG | 1 cut(s) | 657 |
| Bme18I | GGWCC | 1 cut(s) | 560 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 275 |
| BmgT120I | GGNCC | 2 cut(s) | 459, 560 |
| BmiI | GGNNCC | 3 cut(s) | 527, 561, 673 |
| BmrFI | CCNGG | 1 cut(s) | 657 |
| BmsI | GCATC | 2 cut(s) | 592, 820 |
| BpuEI | CTTGAG | 1 cut(s) | 153 |
| Bsa29I | ATCGAT | 1 cut(s) | 745 |
| BsaAI | YACGTR | 2 cut(s) | 614, 632 |
| BsaBI | GATNNNNATC | 1 cut(s) | 783 |
| BsaJI | CCNNGG | 2 cut(s) | 655, 683 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 628, 658, 664, 694 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 64, 258, 509, 510, 633, 662, 685 |
| Bse8I | GATNNNNATC | 1 cut(s) | 783 |
| BseBI | CCWGG | 1 cut(s) | 657 |
| BseCI | ATCGAT | 1 cut(s) | 745 |
| BseDI | CCNNGG | 2 cut(s) | 655, 683 |
| BseGI | GGATG | 1 cut(s) | 835 |
| BseJI | GATNNNNATC | 1 cut(s) | 783 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 64, 258, 509, 510, 633, 662, 685 |
| BseMII | CTCAG | 1 cut(s) | 408 |
| BseSI | GKGCMC | 2 cut(s) | 706, 825 |
| BshFI | GGCC | 1 cut(s) | 460 |
| BshNI | GGYRCC | 1 cut(s) | 671 |
| BshVI | ATCGAT | 1 cut(s) | 745 |
| BsiHKAI | GWGCWC | 2 cut(s) | 706, 825 |
| BslFI | GGGAC | 1 cut(s) | 564 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 64, 258, 509, 510, 633, 662, 685 |
| BsmFI | GGGAC | 1 cut(s) | 564 |
| BsmI | GAATGC | 1 cut(s) | 477 |
| BsnI | GGCC | 1 cut(s) | 460 |
| Bsp1286I | GDGCHC | 2 cut(s) | 706, 825 |
| Bsp143I | GATC | 2 cut(s) | 133, 375 |
| BspACI | CCGC | 4 cut(s) | 352, 592, 605, 834 |
| BspANI | GGCC | 1 cut(s) | 460 |
| BspCNI | CTCAG | 1 cut(s) | 409 |
| BspDI | ATCGAT | 1 cut(s) | 745 |
| BspLI | GGNNCC | 3 cut(s) | 527, 561, 673 |
| BspPI | GGATC | 2 cut(s) | 128, 383 |
| BspQI | GCTCTTC | 1 cut(s) | 243 |
| BspT107I | GGYRCC | 1 cut(s) | 671 |
| BssECI | CCNNGG | 2 cut(s) | 655, 683 |
| BssMI | GATC | 2 cut(s) | 133, 375 |
| BssSI | CACGAG | 2 cut(s) | 379, 437 |
| BssT1I | CCWWGG | 1 cut(s) | 683 |
| Bst2BI | CACGAG | 2 cut(s) | 379, 437 |
| Bst2UI | CCWGG | 1 cut(s) | 657 |
| Bst4CI | ACNGT | 1 cut(s) | 249 |
| Bst6I | CTCTTC | 1 cut(s) | 243 |
| BstBAI | YACGTR | 2 cut(s) | 614, 632 |
| BstC8I | GCNNGC | 1 cut(s) | 165 |
| BstDEI | CTNAG | 3 cut(s) | 417, 471, 531 |
| BstEII | GGTNACC | 1 cut(s) | 67 |
| BstF5I | GGATG | 1 cut(s) | 835 |
| BstHHI | GCGC | 1 cut(s) | 195 |
| BstKTI | GATC | 2 cut(s) | 136, 378 |
| BstMBI | GATC | 2 cut(s) | 133, 375 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 657 |
| BstNI | CCWGG | 1 cut(s) | 657 |
| BstNSI | RCATGY | 1 cut(s) | 167 |
| BstPI | GGTNACC | 1 cut(s) | 67 |
| BstSCI | CCNGG | 1 cut(s) | 655 |
| BstSFI | CTRYAG | 2 cut(s) | 245, 411 |
| BstSLI | GKGCMC | 2 cut(s) | 706, 825 |
| BstX2I | RGATCY | 1 cut(s) | 133 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 749 |
| BstYI | RGATCY | 1 cut(s) | 133 |
| Bsu15I | ATCGAT | 1 cut(s) | 745 |
| BsuI | GTATCC | 1 cut(s) | 601 |
| BsuRI | GGCC | 1 cut(s) | 460 |
| BsuTUI | ATCGAT | 1 cut(s) | 745 |
| BtsCI | GGATG | 1 cut(s) | 835 |
| BtsI | GCAGTG | 1 cut(s) | 667 |
| BtsIMutI | CAGTG | 2 cut(s) | 354, 667 |
| Cac8I | GCNNGC | 1 cut(s) | 165 |
| CaiI | CAGNNNCTG | 1 cut(s) | 137 |
| CfoI | GCGC | 1 cut(s) | 195 |
| Cfr13I | GGNCC | 2 cut(s) | 459, 560 |
| ClaI | ATCGAT | 1 cut(s) | 745 |
| CviAII | CATG | 4 cut(s) | 31, 164, 253, 425 |
| CviJI | RGCY | 8 cut(s) | 48, 236, 292, 329, 394, 416, 460, 809 |
| CviKI_1 | RGCY | 8 cut(s) | 48, 236, 292, 329, 394, 416, 460, 809 |
| DdeI | CTNAG | 3 cut(s) | 417, 471, 531 |
| DpnI | GATC | 2 cut(s) | 135, 377 |
| DpnII | GATC | 2 cut(s) | 133, 375 |
| DraIII | CACNNNGTG | 2 cut(s) | 617, 701 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 558 |
| DriI | GACNNNNNGTC | 1 cut(s) | 275 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 558 |
| Eam1104I | CTCTTC | 1 cut(s) | 243 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 275 |
| EarI | CTCTTC | 1 cut(s) | 243 |
| Eco130I | CCWWGG | 1 cut(s) | 683 |
| Eco47I | GGWCC | 1 cut(s) | 560 |
| Eco57I | CTGAAG | 1 cut(s) | 378 |
| Eco72I | CACGTG | 2 cut(s) | 614, 632 |
| Eco91I | GGTNACC | 1 cut(s) | 67 |
| EcoO65I | GGTNACC | 1 cut(s) | 67 |
| EcoRII | CCWGG | 1 cut(s) | 655 |
| EcoT14I | CCWWGG | 1 cut(s) | 683 |
| ErhI | CCWWGG | 1 cut(s) | 683 |
| FaeI | CATG | 4 cut(s) | 34, 167, 256, 428 |
| FaqI | GGGAC | 1 cut(s) | 564 |
| FatI | CATG | 4 cut(s) | 30, 163, 252, 424 |
| Fnu4HI | GCNGC | 1 cut(s) | 834 |
| FokI | GGATG | 1 cut(s) | 842 |
| Fsp4HI | GCNGC | 1 cut(s) | 834 |
| FspBI | CTAG | 3 cut(s) | 15, 369, 684 |
| GlaI | GCGC | 1 cut(s) | 194 |
| GluI | GCNGC | 1 cut(s) | 834 |
| HaeIII | GGCC | 1 cut(s) | 460 |
| HhaI | GCGC | 1 cut(s) | 195 |
| Hin1II | CATG | 4 cut(s) | 34, 167, 256, 428 |
| Hin6I | GCGC | 1 cut(s) | 193 |
| HinP1I | GCGC | 1 cut(s) | 193 |
| HinfI | GANTC | 3 cut(s) | 18, 38, 82 |
| HphI | GGTGA | 4 cut(s) | 77, 233, 781, 785 |
| Hpy166II | GTNNAC | 3 cut(s) | 269, 704, 823 |
| Hpy188I | TCNGA | 3 cut(s) | 52, 232, 300 |
| Hpy188III | TCNNGA | 1 cut(s) | 379 |
| Hpy8I | GTNNAC | 3 cut(s) | 269, 704, 823 |
| HpyAV | CCTTC | 2 cut(s) | 325, 578 |
| HpyCH4III | ACNGT | 1 cut(s) | 249 |
| HpyCH4IV | ACGT | 3 cut(s) | 613, 631, 700 |
| HpyCH4V | TGCA | 4 cut(s) | 500, 516, 704, 823 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 657 |
| HpyF3I | CTNAG | 3 cut(s) | 417, 471, 531 |
| HpySE526I | ACGT | 3 cut(s) | 613, 631, 700 |
| Hsp92II | CATG | 4 cut(s) | 34, 167, 256, 428 |
| HspAI | GCGC | 1 cut(s) | 193 |
| Kzo9I | GATC | 2 cut(s) | 133, 375 |
| LguI | GCTCTTC | 1 cut(s) | 243 |
| LpnPI | CCDG | 6 cut(s) | 30, 144, 150, 288, 642, 669 |
| LweI | GCATC | 2 cut(s) | 592, 820 |
| MaeI | CTAG | 3 cut(s) | 15, 369, 684 |
| MaeII | ACGT | 3 cut(s) | 613, 631, 700 |
| MaeIII | GTNAC | 3 cut(s) | 67, 214, 277 |
| MalI | GATC | 2 cut(s) | 135, 377 |
| MboI | GATC | 2 cut(s) | 133, 375 |
| MboII | GAAGA | 3 cut(s) | 230, 776, 788 |
| MflI | RGATCY | 1 cut(s) | 133 |
| MhlI | GDGCHC | 2 cut(s) | 706, 825 |
| MluCI | AATT | 6 cut(s) | 226, 294, 445, 451, 490, 710 |
| MlyI | GAGTC | 2 cut(s) | 12, 32 |
| MnlI | CCTC | 9 cut(s) | 98, 375, 503, 541, 632, 690, 713, 717, 790 |
| MroXI | GAANNNNTTC | 1 cut(s) | 237 |
| MseI | TTAA | 1 cut(s) | 713 |
| MslI | CAYNNNNRTG | 4 cut(s) | 437, 732, 747, 828 |
| MspR9I | CCNGG | 1 cut(s) | 657 |
| Mva1269I | GAATGC | 1 cut(s) | 477 |
| MvaI | CCWGG | 1 cut(s) | 657 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 657 |
| NdeII | GATC | 2 cut(s) | 133, 375 |
| NlaIII | CATG | 4 cut(s) | 34, 167, 256, 428 |
| NlaIV | GGNNCC | 3 cut(s) | 527, 561, 673 |
| NmuCI | GTSAC | 1 cut(s) | 277 |
| NspI | RCATGY | 1 cut(s) | 167 |
| PaeI | GCATGC | 1 cut(s) | 167 |
| PciSI | GCTCTTC | 1 cut(s) | 243 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 697 |
| PctI | GAATGC | 1 cut(s) | 477 |
| PdmI | GAANNNNTTC | 1 cut(s) | 237 |
| PfeI | GAWTC | 1 cut(s) | 82 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 258 |
| PkrI | GCNGC | 1 cut(s) | 835 |
| PleI | GAGTC | 2 cut(s) | 12, 32 |
| PmaCI | CACGTG | 2 cut(s) | 614, 632 |
| PmlI | CACGTG | 2 cut(s) | 614, 632 |
| PpsI | GAGTC | 2 cut(s) | 12, 32 |
| Ppu21I | YACGTR | 2 cut(s) | 614, 632 |
| PsiI | TTATAA | 2 cut(s) | 450, 495 |
| Psp6I | CCWGG | 1 cut(s) | 655 |
| PspCI | CACGTG | 2 cut(s) | 614, 632 |
| PspEI | GGTNACC | 1 cut(s) | 67 |
| PspGI | CCWGG | 1 cut(s) | 655 |
| PspN4I | GGNNCC | 3 cut(s) | 527, 561, 673 |
| PspPI | GGNCC | 2 cut(s) | 459, 560 |
| PstNI | CAGNNNCTG | 1 cut(s) | 137 |
| PsuI | RGATCY | 1 cut(s) | 133 |
| RseI | CAYNNNNRTG | 4 cut(s) | 437, 732, 747, 828 |
| SapI | GCTCTTC | 1 cut(s) | 243 |
| SaqAI | TTAA | 1 cut(s) | 713 |
| SatI | GCNGC | 1 cut(s) | 834 |
| Sau3AI | GATC | 2 cut(s) | 133, 375 |
| Sau96I | GGNCC | 2 cut(s) | 459, 560 |
| SchI | GAGTC | 2 cut(s) | 12, 32 |
| ScrFI | CCNGG | 1 cut(s) | 657 |
| SduI | GDGCHC | 2 cut(s) | 706, 825 |
| SfaNI | GCATC | 2 cut(s) | 592, 820 |
| SfcI | CTRYAG | 2 cut(s) | 245, 411 |
| SinI | GGWCC | 1 cut(s) | 560 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 437, 732, 747, 828 |
| SmlI | CTYRAG | 1 cut(s) | 168 |
| SmoI | CTYRAG | 1 cut(s) | 168 |
| SphI | GCATGC | 1 cut(s) | 167 |
| Sse9I | AATT | 6 cut(s) | 226, 294, 445, 451, 490, 710 |
| SsiI | CCGC | 4 cut(s) | 352, 592, 605, 834 |
| SspI | AATATT | 1 cut(s) | 105 |
| SspMI | CTAG | 3 cut(s) | 15, 369, 684 |
| StyD4I | CCNGG | 1 cut(s) | 655 |
| StyI | CCWWGG | 1 cut(s) | 683 |
| TaaI | ACNGT | 1 cut(s) | 249 |
| TaiI | ACGT | 3 cut(s) | 616, 634, 703 |
| TaqI | TCGA | 3 cut(s) | 5, 21, 745 |
| TasI | AATT | 6 cut(s) | 226, 294, 445, 451, 490, 710 |
| TauI | GCSGC | 1 cut(s) | 836 |
| TfiI | GAWTC | 1 cut(s) | 82 |
| Tru1I | TTAA | 1 cut(s) | 713 |
| Tru9I | TTAA | 1 cut(s) | 713 |
| TscAI | CASTG | 2 cut(s) | 361, 667 |
| TseFI | GTSAC | 1 cut(s) | 277 |
| Tsp45I | GTSAC | 1 cut(s) | 277 |
| TspDTI | ATGAA | 4 cut(s) | 24, 377, 470, 831 |
| TspGWI | ACGGA | 1 cut(s) | 388 |
| TspRI | CASTG | 2 cut(s) | 361, 667 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 258 |
| VneI | GTGCAC | 2 cut(s) | 702, 821 |
| VpaK11BI | GGWCC | 1 cut(s) | 560 |
| XceI | RCATGY | 1 cut(s) | 167 |
| XmaJI | CCTAGG | 1 cut(s) | 683 |
| XmnI | GAANNNNTTC | 1 cut(s) | 237 |
| XspI | CTAG | 3 cut(s) | 15, 369, 684 |