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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 645 |
| AciI | CCGC | 2 cut(s) | 40, 322 |
| AclWI | GGATC | 2 cut(s) | 224, 512 |
| AcsI | RAATTY | 2 cut(s) | 377, 389 |
| AcyI | GRCGYC | 1 cut(s) | 646 |
| AfaI | GTAC | 3 cut(s) | 22, 209, 631 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 641 |
| AgsI | TTSAA | 1 cut(s) | 337 |
| AjnI | CCWGG | 1 cut(s) | 66 |
| AluBI | AGCT | 3 cut(s) | 116, 122, 523 |
| AluI | AGCT | 3 cut(s) | 116, 122, 523 |
| Alw21I | GWGCWC | 1 cut(s) | 525 |
| Alw26I | GTCTC | 2 cut(s) | 253, 457 |
| AlwI | GGATC | 2 cut(s) | 224, 512 |
| AoxI | GGCC | 1 cut(s) | 54 |
| ApeKI | GCWGC | 1 cut(s) | 140 |
| ApoI | RAATTY | 2 cut(s) | 377, 389 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 366 |
| AspLEI | GCGC | 1 cut(s) | 648 |
| AspS9I | GGNCC | 1 cut(s) | 55 |
| BanI | GGYRCC | 1 cut(s) | 645 |
| BanII | GRGCYC | 1 cut(s) | 525 |
| Bbv12I | GWGCWC | 1 cut(s) | 525 |
| BbvI | GCAGC | 1 cut(s) | 152 |
| BccI | CCATC | 3 cut(s) | 176, 303, 495 |
| BceAI | ACGGC | 1 cut(s) | 128 |
| BciT130I | CCWGG | 1 cut(s) | 68 |
| BciVI | GTATCC | 1 cut(s) | 64 |
| BcoDI | GTCTC | 2 cut(s) | 253, 457 |
| BfaI | CTAG | 2 cut(s) | 87, 299 |
| BfmI | CTRYAG | 1 cut(s) | 495 |
| BfoI | RGCGCY | 1 cut(s) | 649 |
| BfuI | GTATCC | 1 cut(s) | 64 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 149 |
| BglII | AGATCT | 1 cut(s) | 587 |
| BisI | GCNGC | 1 cut(s) | 141 |
| BlsI | GCNGC | 1 cut(s) | 142 |
| Bme1390I | CCNGG | 1 cut(s) | 68 |
| BmgT120I | GGNCC | 1 cut(s) | 55 |
| BmiI | GGNNCC | 1 cut(s) | 647 |
| BmrFI | CCNGG | 1 cut(s) | 68 |
| BmsI | GCATC | 1 cut(s) | 55 |
| BpmI | CTGGAG | 1 cut(s) | 188 |
| BpuEI | CTTGAG | 3 cut(s) | 35, 65, 102 |
| BsaAI | YACGTR | 1 cut(s) | 24 |
| BsaHI | GRCGYC | 1 cut(s) | 646 |
| BsaI | GGTCTC | 1 cut(s) | 253 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 641 |
| Bse1I | ACTGG | 1 cut(s) | 205 |
| BseBI | CCWGG | 1 cut(s) | 68 |
| BseGI | GGATG | 5 cut(s) | 100, 171, 199, 506, 561 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 641 |
| BseNI | ACTGG | 1 cut(s) | 205 |
| BseXI | GCAGC | 1 cut(s) | 152 |
| BshFI | GGCC | 1 cut(s) | 56 |
| BshNI | GGYRCC | 1 cut(s) | 645 |
| BsiHKAI | GWGCWC | 1 cut(s) | 525 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 641 |
| BsmAI | GTCTC | 2 cut(s) | 253, 457 |
| BsmBI | CGTCTC | 1 cut(s) | 457 |
| BsnI | GGCC | 1 cut(s) | 56 |
| Bso31I | GGTCTC | 1 cut(s) | 253 |
| Bsp1286I | GDGCHC | 1 cut(s) | 525 |
| Bsp143I | GATC | 4 cut(s) | 229, 405, 504, 587 |
| BspACI | CCGC | 2 cut(s) | 40, 322 |
| BspANI | GGCC | 1 cut(s) | 56 |
| BspHI | TCATGA | 1 cut(s) | 517 |
| BspLI | GGNNCC | 1 cut(s) | 647 |
| BspMAI | CTGCAG | 1 cut(s) | 499 |
| BspPI | GGATC | 2 cut(s) | 224, 512 |
| BspT107I | GGYRCC | 1 cut(s) | 645 |
| BspTNI | GGTCTC | 1 cut(s) | 253 |
| BsrI | ACTGG | 1 cut(s) | 205 |
| BssMI | GATC | 4 cut(s) | 229, 405, 504, 587 |
| BssNI | GRCGYC | 1 cut(s) | 646 |
| Bst2UI | CCWGG | 1 cut(s) | 68 |
| Bst4CI | ACNGT | 1 cut(s) | 106 |
| BstACI | GRCGYC | 1 cut(s) | 646 |
| BstBAI | YACGTR | 1 cut(s) | 24 |
| BstC8I | GCNNGC | 2 cut(s) | 44, 114 |
| BstDEI | CTNAG | 2 cut(s) | 471, 636 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 639 |
| BstF5I | GGATG | 5 cut(s) | 100, 171, 199, 506, 561 |
| BstH2I | RGCGCY | 1 cut(s) | 649 |
| BstHHI | GCGC | 1 cut(s) | 648 |
| BstKTI | GATC | 4 cut(s) | 232, 408, 507, 590 |
| BstMAI | GTCTC | 2 cut(s) | 253, 457 |
| BstMBI | GATC | 4 cut(s) | 229, 405, 504, 587 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 128, 137, 149, 158 |
| BstNI | CCWGG | 1 cut(s) | 68 |
| BstSCI | CCNGG | 1 cut(s) | 66 |
| BstSFI | CTRYAG | 1 cut(s) | 495 |
| BstV1I | GCAGC | 1 cut(s) | 152 |
| BstX2I | RGATCY | 2 cut(s) | 229, 587 |
| BstYI | RGATCY | 2 cut(s) | 229, 587 |
| BsuI | GTATCC | 1 cut(s) | 64 |
| BsuRI | GGCC | 1 cut(s) | 56 |
| BtgZI | GCGATG | 1 cut(s) | 431 |
| BtsCI | GGATG | 5 cut(s) | 100, 171, 199, 506, 561 |
| Cac8I | GCNNGC | 2 cut(s) | 44, 114 |
| CciI | TCATGA | 1 cut(s) | 517 |
| CfoI | GCGC | 1 cut(s) | 648 |
| Cfr13I | GGNCC | 1 cut(s) | 55 |
| Csp6I | GTAC | 3 cut(s) | 21, 208, 630 |
| CviAII | CATG | 3 cut(s) | 59, 518, 554 |
| CviJI | RGCY | 7 cut(s) | 56, 85, 116, 122, 143, 167, 523 |
| CviKI_1 | RGCY | 7 cut(s) | 56, 85, 116, 122, 143, 167, 523 |
| CviQI | GTAC | 3 cut(s) | 21, 208, 630 |
| DdeI | CTNAG | 2 cut(s) | 471, 636 |
| DinI | GGCGCC | 1 cut(s) | 647 |
| DpnI | GATC | 4 cut(s) | 231, 407, 506, 589 |
| DpnII | GATC | 4 cut(s) | 229, 405, 504, 587 |
| EciI | GGCGGA | 1 cut(s) | 29 |
| Ecl136II | GAGCTC | 1 cut(s) | 523 |
| Eco24I | GRGCYC | 1 cut(s) | 525 |
| Eco31I | GGTCTC | 1 cut(s) | 253 |
| Eco32I | GATATC | 1 cut(s) | 13 |
| Eco53kI | GAGCTC | 1 cut(s) | 523 |
| EcoICRI | GAGCTC | 1 cut(s) | 523 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 639 |
| EcoRII | CCWGG | 1 cut(s) | 66 |
| EcoRV | GATATC | 1 cut(s) | 13 |
| EcoT38I | GRGCYC | 1 cut(s) | 525 |
| EgeI | GGCGCC | 1 cut(s) | 647 |
| EheI | GGCGCC | 1 cut(s) | 647 |
| Esp3I | CGTCTC | 1 cut(s) | 457 |
| FaeI | CATG | 3 cut(s) | 62, 521, 557 |
| FatI | CATG | 3 cut(s) | 58, 517, 553 |
| Fnu4HI | GCNGC | 1 cut(s) | 141 |
| FokI | GGATG | 5 cut(s) | 107, 158, 206, 513, 548 |
| FriOI | GRGCYC | 1 cut(s) | 525 |
| Fsp4HI | GCNGC | 1 cut(s) | 141 |
| FspBI | CTAG | 2 cut(s) | 87, 299 |
| GlaI | GCGC | 1 cut(s) | 647 |
| GluI | GCNGC | 1 cut(s) | 141 |
| GsuI | CTGGAG | 1 cut(s) | 188 |
| HaeII | RGCGCY | 1 cut(s) | 649 |
| HaeIII | GGCC | 1 cut(s) | 56 |
| HhaI | GCGC | 1 cut(s) | 648 |
| Hin1I | GRCGYC | 1 cut(s) | 646 |
| Hin1II | CATG | 3 cut(s) | 62, 521, 557 |
| Hin6I | GCGC | 1 cut(s) | 646 |
| HinP1I | GCGC | 1 cut(s) | 646 |
| HindIII | AAGCTT | 1 cut(s) | 120 |
| HinfI | GANTC | 7 cut(s) | 4, 76, 181, 197, 281, 483, 614 |
| Hpy188I | TCNGA | 1 cut(s) | 361 |
| Hpy188III | TCNNGA | 6 cut(s) | 8, 32, 92, 347, 518, 611 |
| HpyAV | CCTTC | 1 cut(s) | 454 |
| HpyCH4III | ACNGT | 1 cut(s) | 106 |
| HpyCH4IV | ACGT | 2 cut(s) | 23, 273 |
| HpyCH4V | TGCA | 2 cut(s) | 458, 497 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 128, 137, 149, 158 |
| HpyF3I | CTNAG | 2 cut(s) | 471, 636 |
| HpySE526I | ACGT | 2 cut(s) | 23, 273 |
| Hsp92I | GRCGYC | 1 cut(s) | 646 |
| Hsp92II | CATG | 3 cut(s) | 62, 521, 557 |
| HspAI | GCGC | 1 cut(s) | 646 |
| KasI | GGCGCC | 1 cut(s) | 645 |
| Kzo9I | GATC | 4 cut(s) | 229, 405, 504, 587 |
| LmnI | GCTCC | 1 cut(s) | 207 |
| LpnPI | CCDG | 9 cut(s) | 53, 56, 77, 80, 218, 247, 299, 483, 624 |
| Lsp1109I | GCAGC | 1 cut(s) | 152 |
| LweI | GCATC | 1 cut(s) | 55 |
| MaeI | CTAG | 2 cut(s) | 87, 299 |
| MaeII | ACGT | 2 cut(s) | 23, 273 |
| MaeIII | GTNAC | 2 cut(s) | 278, 490 |
| MalI | GATC | 4 cut(s) | 231, 407, 506, 589 |
| MboI | GATC | 4 cut(s) | 229, 405, 504, 587 |
| MboII | GAAGA | 3 cut(s) | 236, 239, 583 |
| MflI | RGATCY | 2 cut(s) | 229, 587 |
| MhlI | GDGCHC | 1 cut(s) | 525 |
| MluCI | AATT | 3 cut(s) | 377, 389, 619 |
| Mly113I | GGCGCC | 1 cut(s) | 646 |
| MlyI | GAGTC | 2 cut(s) | 175, 275 |
| MnlI | CCTC | 2 cut(s) | 329, 635 |
| MroXI | GAANNNNTTC | 1 cut(s) | 366 |
| MseI | TTAA | 2 cut(s) | 375, 383 |
| MslI | CAYNNNNRTG | 2 cut(s) | 176, 566 |
| MspR9I | CCNGG | 1 cut(s) | 68 |
| MvaI | CCWGG | 1 cut(s) | 68 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 128, 137, 149, 158 |
| NarI | GGCGCC | 1 cut(s) | 646 |
| NdeII | GATC | 4 cut(s) | 229, 405, 504, 587 |
| NlaIII | CATG | 3 cut(s) | 62, 521, 557 |
| NlaIV | GGNNCC | 1 cut(s) | 647 |
| NmuCI | GTSAC | 1 cut(s) | 278 |
| PagI | TCATGA | 1 cut(s) | 517 |
| PdmI | GAANNNNTTC | 1 cut(s) | 366 |
| PfeI | GAWTC | 4 cut(s) | 76, 197, 483, 614 |
| PflFI | GACNNNGTC | 1 cut(s) | 272 |
| PfoI | TCCNGGA | 1 cut(s) | 66 |
| PkrI | GCNGC | 1 cut(s) | 142 |
| PleI | GAGTC | 2 cut(s) | 175, 275 |
| PluTI | GGCGCC | 1 cut(s) | 649 |
| PpsI | GAGTC | 2 cut(s) | 175, 275 |
| Ppu21I | YACGTR | 1 cut(s) | 24 |
| Psp124BI | GAGCTC | 1 cut(s) | 525 |
| Psp6I | CCWGG | 1 cut(s) | 66 |
| PspGI | CCWGG | 1 cut(s) | 66 |
| PspN4I | GGNNCC | 1 cut(s) | 647 |
| PspPI | GGNCC | 1 cut(s) | 55 |
| PstI | CTGCAG | 1 cut(s) | 499 |
| PsuI | RGATCY | 2 cut(s) | 229, 587 |
| PsyI | GACNNNGTC | 1 cut(s) | 272 |
| RsaI | GTAC | 3 cut(s) | 22, 209, 631 |
| RsaNI | GTAC | 3 cut(s) | 21, 208, 630 |
| RseI | CAYNNNNRTG | 2 cut(s) | 176, 566 |
| SacI | GAGCTC | 1 cut(s) | 525 |
| SaqAI | TTAA | 2 cut(s) | 375, 383 |
| SatI | GCNGC | 1 cut(s) | 141 |
| Sau3AI | GATC | 4 cut(s) | 229, 405, 504, 587 |
| Sau96I | GGNCC | 1 cut(s) | 55 |
| SchI | GAGTC | 2 cut(s) | 175, 275 |
| ScrFI | CCNGG | 1 cut(s) | 68 |
| SduI | GDGCHC | 1 cut(s) | 525 |
| SetI | ASST | 9 cut(s) | 26, 118, 124, 276, 300, 321, 446, 515, 525 |
| SfaNI | GCATC | 1 cut(s) | 55 |
| SfcI | CTRYAG | 1 cut(s) | 495 |
| SfoI | GGCGCC | 1 cut(s) | 647 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 176, 566 |
| SmlI | CTYRAG | 3 cut(s) | 50, 80, 117 |
| SmoI | CTYRAG | 3 cut(s) | 50, 80, 117 |
| Sse9I | AATT | 3 cut(s) | 377, 389, 619 |
| SsiI | CCGC | 2 cut(s) | 40, 322 |
| SspDI | GGCGCC | 1 cut(s) | 645 |
| SspMI | CTAG | 2 cut(s) | 87, 299 |
| SstI | GAGCTC | 1 cut(s) | 525 |
| StyD4I | CCNGG | 1 cut(s) | 66 |
| TaaI | ACNGT | 1 cut(s) | 106 |
| TaiI | ACGT | 2 cut(s) | 26, 276 |
| TaqI | TCGA | 1 cut(s) | 481 |
| TasI | AATT | 3 cut(s) | 377, 389, 619 |
| TfiI | GAWTC | 4 cut(s) | 76, 197, 483, 614 |
| Tru1I | TTAA | 2 cut(s) | 375, 383 |
| Tru9I | TTAA | 2 cut(s) | 375, 383 |
| TseFI | GTSAC | 1 cut(s) | 278 |
| TseI | GCWGC | 1 cut(s) | 140 |
| Tsp45I | GTSAC | 1 cut(s) | 278 |
| TspDTI | ATGAA | 5 cut(s) | 75, 233, 237, 506, 551 |
| Tth111I | GACNNNGTC | 1 cut(s) | 272 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 639 |
| XapI | RAATTY | 2 cut(s) | 377, 389 |
| XmnI | GAANNNNTTC | 1 cut(s) | 366 |
| XspI | CTAG | 2 cut(s) | 87, 299 |