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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccIII | TCCGGA | 1 cut(s) | 568 |
| AciI | CCGC | 1 cut(s) | 280 |
| AclWI | GGATC | 2 cut(s) | 470, 540 |
| AcsI | RAATTY | 1 cut(s) | 347 |
| AfaI | GTAC | 1 cut(s) | 167 |
| AgsI | TTSAA | 1 cut(s) | 295 |
| AjiI | CACGTC | 1 cut(s) | 55 |
| AjnI | CCWGG | 2 cut(s) | 24, 48 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 207, 239 |
| AluBI | AGCT | 2 cut(s) | 80, 481 |
| AluI | AGCT | 2 cut(s) | 80, 481 |
| Alw21I | GWGCWC | 1 cut(s) | 483 |
| Alw26I | GTCTC | 1 cut(s) | 505 |
| AlwI | GGATC | 2 cut(s) | 470, 540 |
| Ama87I | CYCGRG | 1 cut(s) | 38 |
| Aor13HI | TCCGGA | 1 cut(s) | 568 |
| AoxI | GGCC | 1 cut(s) | 12 |
| ApeKI | GCWGC | 1 cut(s) | 98 |
| ApoI | RAATTY | 1 cut(s) | 347 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 324, 564 |
| AvaI | CYCGRG | 1 cut(s) | 38 |
| BanII | GRGCYC | 1 cut(s) | 483 |
| BbsI | GAAGAC | 2 cut(s) | 192, 395 |
| Bbv12I | GWGCWC | 1 cut(s) | 483 |
| BbvI | GCAGC | 1 cut(s) | 110 |
| BccI | CCATC | 4 cut(s) | 134, 261, 415, 416 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 434, 468 |
| BciT130I | CCWGG | 2 cut(s) | 26, 50 |
| BciVI | GTATCC | 1 cut(s) | 22 |
| BcoDI | GTCTC | 1 cut(s) | 505 |
| BfaI | CTAG | 2 cut(s) | 45, 257 |
| BfmI | CTRYAG | 1 cut(s) | 453 |
| BfuI | GTATCC | 1 cut(s) | 22 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 107 |
| BisI | GCNGC | 1 cut(s) | 99 |
| BlsI | GCNGC | 1 cut(s) | 100 |
| Bme1390I | CCNGG | 2 cut(s) | 26, 50 |
| BmeT110I | CYCGRG | 1 cut(s) | 38 |
| BmgBI | CACGTC | 1 cut(s) | 55 |
| BmrFI | CCNGG | 2 cut(s) | 26, 50 |
| BmsI | GCATC | 1 cut(s) | 13 |
| BpiI | GAAGAC | 2 cut(s) | 192, 395 |
| BpmI | CTGGAG | 1 cut(s) | 146 |
| BpuEI | CTTGAG | 1 cut(s) | 60 |
| Bsa29I | ATCGAT | 1 cut(s) | 444 |
| BsaJI | CCNNGG | 1 cut(s) | 549 |
| BsaWI | WCCGGW | 1 cut(s) | 568 |
| Bse1I | ACTGG | 1 cut(s) | 163 |
| BseAI | TCCGGA | 1 cut(s) | 568 |
| BseBI | CCWGG | 2 cut(s) | 26, 50 |
| BseCI | ATCGAT | 1 cut(s) | 444 |
| BseDI | CCNNGG | 1 cut(s) | 549 |
| BseGI | GGATG | 3 cut(s) | 129, 157, 519 |
| BseNI | ACTGG | 1 cut(s) | 163 |
| BseXI | GCAGC | 1 cut(s) | 110 |
| BshFI | GGCC | 1 cut(s) | 14 |
| BshVI | ATCGAT | 1 cut(s) | 444 |
| BsiHKAI | GWGCWC | 1 cut(s) | 483 |
| BsiHKCI | CYCGRG | 1 cut(s) | 38 |
| BsiSI | CCGG | 1 cut(s) | 569 |
| BsmAI | GTCTC | 1 cut(s) | 505 |
| BsnI | GGCC | 1 cut(s) | 14 |
| BsoBI | CYCGRG | 1 cut(s) | 38 |
| Bsp1286I | GDGCHC | 1 cut(s) | 483 |
| Bsp13I | TCCGGA | 1 cut(s) | 568 |
| Bsp143I | GATC | 2 cut(s) | 462, 545 |
| BspACI | CCGC | 1 cut(s) | 280 |
| BspANI | GGCC | 1 cut(s) | 14 |
| BspDI | ATCGAT | 1 cut(s) | 444 |
| BspEI | TCCGGA | 1 cut(s) | 568 |
| BspHI | TCATGA | 1 cut(s) | 475 |
| BspMAI | CTGCAG | 1 cut(s) | 457 |
| BspPI | GGATC | 2 cut(s) | 470, 540 |
| BsrI | ACTGG | 1 cut(s) | 163 |
| BssECI | CCNNGG | 1 cut(s) | 549 |
| BssMI | GATC | 2 cut(s) | 462, 545 |
| Bst2UI | CCWGG | 2 cut(s) | 26, 50 |
| Bst4CI | ACNGT | 1 cut(s) | 64 |
| BstDEI | CTNAG | 2 cut(s) | 103, 429 |
| BstDSI | CCRYGG | 1 cut(s) | 549 |
| BstF5I | GGATG | 3 cut(s) | 129, 157, 519 |
| BstKTI | GATC | 2 cut(s) | 465, 548 |
| BstMAI | GTCTC | 1 cut(s) | 505 |
| BstMBI | GATC | 2 cut(s) | 462, 545 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 107, 116 |
| BstNI | CCWGG | 2 cut(s) | 26, 50 |
| BstSCI | CCNGG | 2 cut(s) | 24, 48 |
| BstSFI | CTRYAG | 1 cut(s) | 453 |
| BstV1I | GCAGC | 1 cut(s) | 110 |
| BstV2I | GAAGAC | 2 cut(s) | 192, 395 |
| BstX2I | RGATCY | 1 cut(s) | 545 |
| BstYI | RGATCY | 1 cut(s) | 545 |
| Bsu15I | ATCGAT | 1 cut(s) | 444 |
| BsuI | GTATCC | 1 cut(s) | 22 |
| BsuRI | GGCC | 1 cut(s) | 14 |
| BsuTUI | ATCGAT | 1 cut(s) | 444 |
| BtgI | CCRYGG | 1 cut(s) | 549 |
| BtgZI | GCGATG | 1 cut(s) | 389 |
| BtrI | CACGTC | 1 cut(s) | 55 |
| BtsCI | GGATG | 3 cut(s) | 129, 157, 519 |
| CciI | TCATGA | 1 cut(s) | 475 |
| ClaI | ATCGAT | 1 cut(s) | 444 |
| Csp6I | GTAC | 1 cut(s) | 166 |
| CviAII | CATG | 1 cut(s) | 476 |
| CviJI | RGCY | 9 cut(s) | 14, 43, 48, 80, 101, 125, 199, 276, 481 |
| CviKI_1 | RGCY | 9 cut(s) | 14, 43, 48, 80, 101, 125, 199, 276, 481 |
| CviQI | GTAC | 1 cut(s) | 166 |
| DdeI | CTNAG | 2 cut(s) | 103, 429 |
| DpnI | GATC | 2 cut(s) | 464, 547 |
| DpnII | GATC | 2 cut(s) | 462, 545 |
| Ecl136II | GAGCTC | 1 cut(s) | 481 |
| Eco24I | GRGCYC | 1 cut(s) | 483 |
| Eco53kI | GAGCTC | 1 cut(s) | 481 |
| Eco88I | CYCGRG | 1 cut(s) | 38 |
| EcoICRI | GAGCTC | 1 cut(s) | 481 |
| EcoRI | GAATTC | 1 cut(s) | 347 |
| EcoRII | CCWGG | 2 cut(s) | 24, 48 |
| EcoT22I | ATGCAT | 1 cut(s) | 6 |
| EcoT38I | GRGCYC | 1 cut(s) | 483 |
| FaeI | CATG | 1 cut(s) | 479 |
| FatI | CATG | 1 cut(s) | 475 |
| FauNDI | CATATG | 2 cut(s) | 147, 370 |
| Fnu4HI | GCNGC | 1 cut(s) | 99 |
| FokI | GGATG | 3 cut(s) | 116, 164, 506 |
| FriOI | GRGCYC | 1 cut(s) | 483 |
| Fsp4HI | GCNGC | 1 cut(s) | 99 |
| FspBI | CTAG | 2 cut(s) | 45, 257 |
| GluI | GCNGC | 1 cut(s) | 99 |
| GsuI | CTGGAG | 1 cut(s) | 146 |
| HaeIII | GGCC | 1 cut(s) | 14 |
| HapII | CCGG | 1 cut(s) | 569 |
| Hin1II | CATG | 1 cut(s) | 479 |
| HindIII | AAGCTT | 1 cut(s) | 78 |
| HinfI | GANTC | 5 cut(s) | 34, 139, 155, 391, 441 |
| HpaII | CCGG | 1 cut(s) | 569 |
| Hpy166II | GTNNAC | 1 cut(s) | 366 |
| Hpy188I | TCNGA | 2 cut(s) | 319, 505 |
| Hpy188III | TCNNGA | 6 cut(s) | 38, 251, 305, 476, 543, 569 |
| Hpy8I | GTNNAC | 1 cut(s) | 366 |
| HpyAV | CCTTC | 2 cut(s) | 189, 412 |
| HpyCH4III | ACNGT | 1 cut(s) | 64 |
| HpyCH4IV | ACGT | 2 cut(s) | 54, 231 |
| HpyCH4V | TGCA | 2 cut(s) | 4, 455 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 107, 116 |
| HpyF3I | CTNAG | 2 cut(s) | 103, 429 |
| HpySE526I | ACGT | 2 cut(s) | 54, 231 |
| Hsp92II | CATG | 1 cut(s) | 479 |
| Kpn2I | TCCGGA | 1 cut(s) | 568 |
| Kzo9I | GATC | 2 cut(s) | 462, 545 |
| LpnPI | CCDG | 9 cut(s) | 11, 35, 38, 62, 176, 205, 257, 264, 441 |
| Lsp1109I | GCAGC | 1 cut(s) | 110 |
| LweI | GCATC | 1 cut(s) | 13 |
| MaeI | CTAG | 2 cut(s) | 45, 257 |
| MaeII | ACGT | 2 cut(s) | 54, 231 |
| MaeIII | GTNAC | 2 cut(s) | 236, 448 |
| MalI | GATC | 2 cut(s) | 464, 547 |
| MboI | GATC | 2 cut(s) | 462, 545 |
| MboII | GAAGA | 5 cut(s) | 194, 197, 227, 400, 541 |
| MflI | RGATCY | 1 cut(s) | 545 |
| MhlI | GDGCHC | 1 cut(s) | 483 |
| MluCI | AATT | 4 cut(s) | 347, 433, 538, 572 |
| MlyI | GAGTC | 2 cut(s) | 133, 385 |
| MnlI | CCTC | 3 cut(s) | 84, 100, 287 |
| Mph1103I | ATGCAT | 1 cut(s) | 6 |
| MroI | TCCGGA | 1 cut(s) | 568 |
| MroXI | GAANNNNTTC | 2 cut(s) | 324, 564 |
| MseI | TTAA | 2 cut(s) | 333, 341 |
| MslI | CAYNNNNRTG | 3 cut(s) | 134, 150, 524 |
| MspI | CCGG | 1 cut(s) | 569 |
| MspR9I | CCNGG | 2 cut(s) | 26, 50 |
| MvaI | CCWGG | 2 cut(s) | 26, 50 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 107, 116 |
| NdeI | CATATG | 2 cut(s) | 147, 370 |
| NdeII | GATC | 2 cut(s) | 462, 545 |
| NlaIII | CATG | 1 cut(s) | 479 |
| NmuCI | GTSAC | 1 cut(s) | 236 |
| NsiI | ATGCAT | 1 cut(s) | 6 |
| PaeR7I | CTCGAG | 1 cut(s) | 38 |
| PagI | TCATGA | 1 cut(s) | 475 |
| PdmI | GAANNNNTTC | 2 cut(s) | 324, 564 |
| PfeI | GAWTC | 3 cut(s) | 34, 155, 441 |
| PfoI | TCCNGGA | 1 cut(s) | 24 |
| PkrI | GCNGC | 1 cut(s) | 100 |
| PleI | GAGTC | 2 cut(s) | 133, 385 |
| PpsI | GAGTC | 2 cut(s) | 133, 385 |
| Psp124BI | GAGCTC | 1 cut(s) | 483 |
| Psp6I | CCWGG | 2 cut(s) | 24, 48 |
| PspGI | CCWGG | 2 cut(s) | 24, 48 |
| PstI | CTGCAG | 1 cut(s) | 457 |
| PsuI | RGATCY | 1 cut(s) | 545 |
| RsaI | GTAC | 1 cut(s) | 167 |
| RsaNI | GTAC | 1 cut(s) | 166 |
| RseI | CAYNNNNRTG | 3 cut(s) | 134, 150, 524 |
| SacI | GAGCTC | 1 cut(s) | 483 |
| SaqAI | TTAA | 2 cut(s) | 333, 341 |
| SatI | GCNGC | 1 cut(s) | 99 |
| Sau3AI | GATC | 2 cut(s) | 462, 545 |
| SchI | GAGTC | 2 cut(s) | 133, 385 |
| ScrFI | CCNGG | 2 cut(s) | 26, 50 |
| SduI | GDGCHC | 1 cut(s) | 483 |
| SetI | ASST | 7 cut(s) | 57, 76, 82, 234, 258, 404, 483 |
| SfaNI | GCATC | 1 cut(s) | 13 |
| SfcI | CTRYAG | 1 cut(s) | 453 |
| Sfr274I | CTCGAG | 1 cut(s) | 38 |
| SlaI | CTCGAG | 1 cut(s) | 38 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 134, 150, 524 |
| SmlI | CTYRAG | 3 cut(s) | 8, 38, 75 |
| SmoI | CTYRAG | 3 cut(s) | 8, 38, 75 |
| Sse9I | AATT | 4 cut(s) | 347, 433, 538, 572 |
| SsiI | CCGC | 1 cut(s) | 280 |
| SspMI | CTAG | 2 cut(s) | 45, 257 |
| SstI | GAGCTC | 1 cut(s) | 483 |
| StyD4I | CCNGG | 2 cut(s) | 24, 48 |
| TaaI | ACNGT | 1 cut(s) | 64 |
| TaiI | ACGT | 2 cut(s) | 57, 234 |
| TaqI | TCGA | 5 cut(s) | 39, 213, 439, 444, 542 |
| TasI | AATT | 4 cut(s) | 347, 433, 538, 572 |
| TfiI | GAWTC | 3 cut(s) | 34, 155, 441 |
| Tru1I | TTAA | 2 cut(s) | 333, 341 |
| Tru9I | TTAA | 2 cut(s) | 333, 341 |
| TseFI | GTSAC | 1 cut(s) | 236 |
| TseI | GCWGC | 1 cut(s) | 98 |
| Tsp45I | GTSAC | 1 cut(s) | 236 |
| TspDTI | ATGAA | 5 cut(s) | 33, 191, 195, 464, 509 |
| TspGWI | ACGGA | 3 cut(s) | 224, 475, 538 |
| XapI | RAATTY | 1 cut(s) | 347 |
| XhoI | CTCGAG | 1 cut(s) | 38 |
| XmnI | GAANNNNTTC | 2 cut(s) | 324, 564 |
| XspI | CTAG | 2 cut(s) | 45, 257 |
| Zsp2I | ATGCAT | 1 cut(s) | 6 |