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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 69 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 405 |
| AccB1I | GGYRCC | 2 cut(s) | 245, 559 |
| AccI | GTMKAC | 1 cut(s) | 663 |
| AccII | CGCG | 1 cut(s) | 549 |
| AccIII | TCCGGA | 1 cut(s) | 325 |
| AciI | CCGC | 2 cut(s) | 37, 495 |
| AclWI | GGATC | 1 cut(s) | 616 |
| AcoI | YGGCCR | 1 cut(s) | 112 |
| AcyI | GRCGYC | 1 cut(s) | 246 |
| AfaI | GTAC | 1 cut(s) | 637 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 356, 427 |
| AflIII | ACRYGT | 2 cut(s) | 475, 632 |
| AgsI | TTSAA | 2 cut(s) | 52, 186 |
| AluBI | AGCT | 4 cut(s) | 80, 238, 260, 577 |
| AluI | AGCT | 4 cut(s) | 80, 238, 260, 577 |
| Alw21I | GWGCWC | 1 cut(s) | 240 |
| Alw26I | GTCTC | 2 cut(s) | 99, 172 |
| AlwI | GGATC | 1 cut(s) | 616 |
| Aor13HI | TCCGGA | 1 cut(s) | 325 |
| AoxI | GGCC | 2 cut(s) | 112, 624 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 81 |
| AspLEI | GCGC | 2 cut(s) | 248, 551 |
| AspS9I | GGNCC | 2 cut(s) | 407, 624 |
| AvaII | GGWCC | 1 cut(s) | 407 |
| BaeGI | GKGCMC | 1 cut(s) | 349 |
| BalI | TGGCCA | 1 cut(s) | 114 |
| BanI | GGYRCC | 2 cut(s) | 245, 559 |
| BanII | GRGCYC | 1 cut(s) | 240 |
| BbsI | GAAGAC | 1 cut(s) | 152 |
| Bbv12I | GWGCWC | 1 cut(s) | 240 |
| BccI | CCATC | 2 cut(s) | 18, 94 |
| BcoDI | GTCTC | 2 cut(s) | 99, 172 |
| BfaI | CTAG | 1 cut(s) | 300 |
| BfmI | CTRYAG | 1 cut(s) | 337 |
| BfoI | RGCGCY | 1 cut(s) | 249 |
| Bme18I | GGWCC | 1 cut(s) | 407 |
| BmgT120I | GGNCC | 2 cut(s) | 407, 624 |
| BmiI | GGNNCC | 4 cut(s) | 247, 461, 499, 561 |
| BmsI | GCATC | 1 cut(s) | 228 |
| BpiI | GAAGAC | 1 cut(s) | 152 |
| BsaBI | GATNNNNATC | 2 cut(s) | 137, 607 |
| BsaHI | GRCGYC | 1 cut(s) | 246 |
| BsaJI | CCNNGG | 3 cut(s) | 306, 463, 508 |
| BsaWI | WCCGGW | 1 cut(s) | 325 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 356, 427 |
| Bse8I | GATNNNNATC | 2 cut(s) | 137, 607 |
| BseAI | TCCGGA | 1 cut(s) | 325 |
| BseDI | CCNNGG | 3 cut(s) | 306, 463, 508 |
| BseJI | GATNNNNATC | 2 cut(s) | 137, 607 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 356, 427 |
| BseSI | GKGCMC | 1 cut(s) | 349 |
| BsgI | GTGCAG | 1 cut(s) | 156 |
| Bsh1236I | CGCG | 1 cut(s) | 549 |
| BshFI | GGCC | 2 cut(s) | 114, 626 |
| BshNI | GGYRCC | 2 cut(s) | 245, 559 |
| BsiHKAI | GWGCWC | 1 cut(s) | 240 |
| BsiSI | CCGG | 1 cut(s) | 326 |
| BslFI | GGGAC | 2 cut(s) | 401, 411 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 356, 427 |
| BsmAI | GTCTC | 2 cut(s) | 99, 172 |
| BsmBI | CGTCTC | 1 cut(s) | 172 |
| BsmFI | GGGAC | 2 cut(s) | 401, 411 |
| BsnI | GGCC | 2 cut(s) | 114, 626 |
| Bsp1286I | GDGCHC | 2 cut(s) | 240, 349 |
| Bsp13I | TCCGGA | 1 cut(s) | 325 |
| Bsp1407I | TGTACA | 1 cut(s) | 635 |
| Bsp143I | GATC | 3 cut(s) | 138, 566, 608 |
| Bsp19I | CCATGG | 1 cut(s) | 508 |
| BspACI | CCGC | 2 cut(s) | 37, 495 |
| BspANI | GGCC | 2 cut(s) | 114, 626 |
| BspEI | TCCGGA | 1 cut(s) | 325 |
| BspFNI | CGCG | 1 cut(s) | 549 |
| BspHI | TCATGA | 1 cut(s) | 232 |
| BspLI | GGNNCC | 4 cut(s) | 247, 461, 499, 561 |
| BspPI | GGATC | 1 cut(s) | 616 |
| BspQI | GCTCTTC | 1 cut(s) | 87 |
| BspT107I | GGYRCC | 2 cut(s) | 245, 559 |
| BsrGI | TGTACA | 1 cut(s) | 635 |
| BssECI | CCNNGG | 3 cut(s) | 306, 463, 508 |
| BssMI | GATC | 3 cut(s) | 138, 566, 608 |
| BssNAI | GTATAC | 1 cut(s) | 664 |
| BssNI | GRCGYC | 1 cut(s) | 246 |
| BssT1I | CCWWGG | 1 cut(s) | 508 |
| Bst1107I | GTATAC | 1 cut(s) | 664 |
| Bst4CI | ACNGT | 1 cut(s) | 464 |
| Bst6I | CTCTTC | 1 cut(s) | 87 |
| BstACI | GRCGYC | 1 cut(s) | 246 |
| BstAUI | TGTACA | 1 cut(s) | 635 |
| BstC8I | GCNNGC | 1 cut(s) | 453 |
| BstDEI | CTNAG | 2 cut(s) | 315, 378 |
| BstDSI | CCRYGG | 3 cut(s) | 306, 463, 508 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 354 |
| BstFNI | CGCG | 1 cut(s) | 549 |
| BstH2I | RGCGCY | 1 cut(s) | 249 |
| BstHHI | GCGC | 2 cut(s) | 248, 551 |
| BstKTI | GATC | 3 cut(s) | 141, 569, 611 |
| BstMAI | GTCTC | 2 cut(s) | 99, 172 |
| BstMBI | GATC | 3 cut(s) | 138, 566, 608 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 689 |
| BstNSI | RCATGY | 2 cut(s) | 455, 636 |
| BstSFI | CTRYAG | 1 cut(s) | 337 |
| BstSLI | GKGCMC | 1 cut(s) | 349 |
| BstUI | CGCG | 1 cut(s) | 549 |
| BstV2I | GAAGAC | 1 cut(s) | 152 |
| BstZ17I | GTATAC | 1 cut(s) | 664 |
| BsuRI | GGCC | 2 cut(s) | 114, 626 |
| BtgI | CCRYGG | 3 cut(s) | 306, 463, 508 |
| BtgZI | GCGATG | 1 cut(s) | 37 |
| BtsIMutI | CAGTG | 1 cut(s) | 173 |
| Cac8I | GCNNGC | 1 cut(s) | 453 |
| CciI | TCATGA | 1 cut(s) | 232 |
| CfoI | GCGC | 2 cut(s) | 248, 551 |
| Cfr13I | GGNCC | 2 cut(s) | 407, 624 |
| CseI | GACGC | 1 cut(s) | 225 |
| Csp6I | GTAC | 1 cut(s) | 636 |
| CviAII | CATG | 6 cut(s) | 233, 250, 452, 509, 633, 700 |
| CviJI | RGCY | 9 cut(s) | 33, 80, 114, 119, 238, 260, 319, 577, 626 |
| CviKI_1 | RGCY | 9 cut(s) | 33, 80, 114, 119, 238, 260, 319, 577, 626 |
| CviQI | GTAC | 1 cut(s) | 636 |
| DdeI | CTNAG | 2 cut(s) | 315, 378 |
| DinI | GGCGCC | 1 cut(s) | 247 |
| DpnI | GATC | 3 cut(s) | 140, 568, 610 |
| DpnII | GATC | 3 cut(s) | 138, 566, 608 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 405 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 405 |
| EaeI | YGGCCR | 1 cut(s) | 112 |
| Eam1104I | CTCTTC | 1 cut(s) | 87 |
| EarI | CTCTTC | 1 cut(s) | 87 |
| EciI | GGCGGA | 1 cut(s) | 510 |
| Ecl136II | GAGCTC | 1 cut(s) | 238 |
| Eco130I | CCWWGG | 1 cut(s) | 508 |
| Eco24I | GRGCYC | 1 cut(s) | 240 |
| Eco47I | GGWCC | 1 cut(s) | 407 |
| Eco53kI | GAGCTC | 1 cut(s) | 238 |
| EcoICRI | GAGCTC | 1 cut(s) | 238 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 354 |
| EcoT14I | CCWWGG | 1 cut(s) | 508 |
| EcoT38I | GRGCYC | 1 cut(s) | 240 |
| EgeI | GGCGCC | 1 cut(s) | 247 |
| EheI | GGCGCC | 1 cut(s) | 247 |
| ErhI | CCWWGG | 1 cut(s) | 508 |
| Esp3I | CGTCTC | 1 cut(s) | 172 |
| FaeI | CATG | 6 cut(s) | 236, 253, 455, 512, 636, 703 |
| FaqI | GGGAC | 2 cut(s) | 401, 411 |
| FatI | CATG | 6 cut(s) | 232, 249, 451, 508, 632, 699 |
| FauNDI | CATATG | 1 cut(s) | 412 |
| FblI | GTMKAC | 1 cut(s) | 663 |
| FriOI | GRGCYC | 1 cut(s) | 240 |
| FspBI | CTAG | 1 cut(s) | 300 |
| GlaI | GCGC | 2 cut(s) | 247, 550 |
| HaeII | RGCGCY | 1 cut(s) | 249 |
| HaeIII | GGCC | 2 cut(s) | 114, 626 |
| HapII | CCGG | 1 cut(s) | 326 |
| HgaI | GACGC | 1 cut(s) | 225 |
| HhaI | GCGC | 2 cut(s) | 248, 551 |
| Hin1I | GRCGYC | 1 cut(s) | 246 |
| Hin1II | CATG | 6 cut(s) | 236, 253, 455, 512, 636, 703 |
| Hin6I | GCGC | 2 cut(s) | 246, 549 |
| HinP1I | GCGC | 2 cut(s) | 246, 549 |
| HincII | GTYRAC | 1 cut(s) | 473 |
| HindII | GTYRAC | 1 cut(s) | 473 |
| HinfI | GANTC | 2 cut(s) | 148, 329 |
| HpaII | CCGG | 1 cut(s) | 326 |
| Hpy166II | GTNNAC | 2 cut(s) | 473, 664 |
| Hpy188I | TCNGA | 4 cut(s) | 76, 99, 198, 505 |
| Hpy188III | TCNNGA | 6 cut(s) | 8, 142, 233, 326, 396, 677 |
| Hpy8I | GTNNAC | 2 cut(s) | 473, 664 |
| HpyAV | CCTTC | 2 cut(s) | 169, 425 |
| HpyCH4III | ACNGT | 1 cut(s) | 464 |
| HpyCH4IV | ACGT | 4 cut(s) | 255, 475, 660, 671 |
| HpyCH4V | TGCA | 5 cut(s) | 173, 212, 363, 455, 656 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 689 |
| HpyF3I | CTNAG | 2 cut(s) | 315, 378 |
| HpySE526I | ACGT | 4 cut(s) | 255, 475, 660, 671 |
| Hsp92I | GRCGYC | 1 cut(s) | 246 |
| Hsp92II | CATG | 6 cut(s) | 236, 253, 455, 512, 636, 703 |
| HspAI | GCGC | 2 cut(s) | 246, 549 |
| KasI | GGCGCC | 1 cut(s) | 245 |
| Kpn2I | TCCGGA | 1 cut(s) | 325 |
| Kzo9I | GATC | 3 cut(s) | 138, 566, 608 |
| LguI | GCTCTTC | 1 cut(s) | 87 |
| LmnI | GCTCC | 2 cut(s) | 367, 574 |
| LpnPI | CCDG | 5 cut(s) | 21, 198, 339, 390, 659 |
| LweI | GCATC | 1 cut(s) | 228 |
| MaeI | CTAG | 1 cut(s) | 300 |
| MaeII | ACGT | 4 cut(s) | 255, 475, 660, 671 |
| MaeIII | GTNAC | 1 cut(s) | 515 |
| MalI | GATC | 3 cut(s) | 140, 568, 610 |
| MboI | GATC | 3 cut(s) | 138, 566, 608 |
| MboII | GAAGA | 4 cut(s) | 74, 157, 298, 493 |
| MhlI | GDGCHC | 2 cut(s) | 240, 349 |
| MlsI | TGGCCA | 1 cut(s) | 114 |
| MluCI | AATT | 2 cut(s) | 391, 694 |
| MluNI | TGGCCA | 1 cut(s) | 114 |
| Mly113I | GGCGCC | 1 cut(s) | 246 |
| MlyI | GAGTC | 2 cut(s) | 142, 338 |
| MmeI | TCCRAC | 1 cut(s) | 528 |
| MnlI | CCTC | 7 cut(s) | 44, 350, 421, 461, 485, 511, 573 |
| Mox20I | TGGCCA | 1 cut(s) | 114 |
| MroI | TCCGGA | 1 cut(s) | 325 |
| MroXI | GAANNNNTTC | 1 cut(s) | 81 |
| MscI | TGGCCA | 1 cut(s) | 114 |
| MseI | TTAA | 1 cut(s) | 715 |
| MslI | CAYNNNNRTG | 1 cut(s) | 588 |
| Msp20I | TGGCCA | 1 cut(s) | 114 |
| MspI | CCGG | 1 cut(s) | 326 |
| MvnI | CGCG | 1 cut(s) | 549 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 689 |
| NarI | GGCGCC | 1 cut(s) | 246 |
| NcoI | CCATGG | 1 cut(s) | 508 |
| NdeI | CATATG | 1 cut(s) | 412 |
| NdeII | GATC | 3 cut(s) | 138, 566, 608 |
| NlaIII | CATG | 6 cut(s) | 236, 253, 455, 512, 636, 703 |
| NlaIV | GGNNCC | 4 cut(s) | 247, 461, 499, 561 |
| NspI | RCATGY | 2 cut(s) | 455, 636 |
| PaeI | GCATGC | 1 cut(s) | 455 |
| PagI | TCATGA | 1 cut(s) | 232 |
| PciI | ACATGT | 1 cut(s) | 632 |
| PciSI | GCTCTTC | 1 cut(s) | 87 |
| PdmI | GAANNNNTTC | 1 cut(s) | 81 |
| PleI | GAGTC | 2 cut(s) | 142, 337 |
| PluTI | GGCGCC | 1 cut(s) | 249 |
| PpsI | GAGTC | 2 cut(s) | 142, 337 |
| PscI | ACATGT | 1 cut(s) | 632 |
| PsiI | TTATAA | 1 cut(s) | 69 |
| Psp124BI | GAGCTC | 1 cut(s) | 240 |
| PspN4I | GGNNCC | 4 cut(s) | 247, 461, 499, 561 |
| PspPI | GGNCC | 2 cut(s) | 407, 624 |
| RsaI | GTAC | 1 cut(s) | 637 |
| RsaNI | GTAC | 1 cut(s) | 636 |
| RseI | CAYNNNNRTG | 1 cut(s) | 588 |
| SacI | GAGCTC | 1 cut(s) | 240 |
| SapI | GCTCTTC | 1 cut(s) | 87 |
| SaqAI | TTAA | 1 cut(s) | 715 |
| Sau3AI | GATC | 3 cut(s) | 138, 566, 608 |
| Sau96I | GGNCC | 2 cut(s) | 407, 624 |
| SchI | GAGTC | 2 cut(s) | 142, 338 |
| SduI | GDGCHC | 2 cut(s) | 240, 349 |
| SfaNI | GCATC | 1 cut(s) | 228 |
| SfcI | CTRYAG | 1 cut(s) | 337 |
| SfoI | GGCGCC | 1 cut(s) | 247 |
| SinI | GGWCC | 1 cut(s) | 407 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 588 |
| SphI | GCATGC | 1 cut(s) | 455 |
| Sse9I | AATT | 2 cut(s) | 391, 694 |
| SsiI | CCGC | 2 cut(s) | 37, 495 |
| SspDI | GGCGCC | 1 cut(s) | 245 |
| SspI | AATATT | 1 cut(s) | 277 |
| SspMI | CTAG | 1 cut(s) | 300 |
| SstI | GAGCTC | 1 cut(s) | 240 |
| StyI | CCWWGG | 1 cut(s) | 508 |
| TaaI | ACNGT | 1 cut(s) | 464 |
| TaiI | ACGT | 4 cut(s) | 258, 478, 663, 674 |
| TaqI | TCGA | 3 cut(s) | 141, 565, 601 |
| TasI | AATT | 2 cut(s) | 391, 694 |
| TatI | WGTACW | 1 cut(s) | 635 |
| Tru1I | TTAA | 1 cut(s) | 715 |
| Tru9I | TTAA | 1 cut(s) | 715 |
| TscAI | CASTG | 1 cut(s) | 180 |
| TspDTI | ATGAA | 2 cut(s) | 221, 266 |
| TspGWI | ACGGA | 1 cut(s) | 472 |
| TspRI | CASTG | 1 cut(s) | 180 |
| VpaK11BI | GGWCC | 1 cut(s) | 407 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 354 |
| XceI | RCATGY | 2 cut(s) | 455, 636 |
| XmiI | GTMKAC | 1 cut(s) | 663 |
| XmnI | GAANNNNTTC | 1 cut(s) | 81 |
| XspI | CTAG | 1 cut(s) | 300 |