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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 17 |
| AccB1I | GGYRCC | 1 cut(s) | 533 |
| AciI | CCGC | 2 cut(s) | 178, 430 |
| AcyI | GRCGYC | 2 cut(s) | 516, 534 |
| AfaI | GTAC | 1 cut(s) | 317 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 478, 482 |
| AgsI | TTSAA | 3 cut(s) | 70, 445, 569 |
| AjiI | CACGTC | 1 cut(s) | 235 |
| AjnI | CCWGG | 2 cut(s) | 228, 538 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 357, 389 |
| AluBI | AGCT | 2 cut(s) | 254, 260 |
| AluI | AGCT | 2 cut(s) | 254, 260 |
| Alw26I | GTCTC | 1 cut(s) | 361 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 455 |
| Ama87I | CYCGRG | 1 cut(s) | 218 |
| ApeKI | GCWGC | 1 cut(s) | 35 |
| AspA2I | CCTAGG | 1 cut(s) | 476 |
| AspLEI | GCGC | 2 cut(s) | 488, 536 |
| AsuHPI | GGTGA | 3 cut(s) | 539, 547, 554 |
| AvaI | CYCGRG | 1 cut(s) | 218 |
| AvrII | CCTAGG | 1 cut(s) | 476 |
| BanI | GGYRCC | 1 cut(s) | 533 |
| BbsI | GAAGAC | 1 cut(s) | 342 |
| BbvI | GCAGC | 1 cut(s) | 22 |
| BccI | CCATC | 5 cut(s) | 284, 411, 506, 524, 528 |
| BciT130I | CCWGG | 2 cut(s) | 230, 540 |
| BcoDI | GTCTC | 1 cut(s) | 361 |
| BfaI | CTAG | 2 cut(s) | 225, 477 |
| BfmI | CTRYAG | 1 cut(s) | 195 |
| BfoI | RGCGCY | 1 cut(s) | 537 |
| BisI | GCNGC | 1 cut(s) | 36 |
| BlnI | CCTAGG | 1 cut(s) | 476 |
| BlsI | GCNGC | 1 cut(s) | 37 |
| Bme1390I | CCNGG | 2 cut(s) | 230, 540 |
| BmeT110I | CYCGRG | 1 cut(s) | 218 |
| BmgBI | CACGTC | 1 cut(s) | 235 |
| BmiI | GGNNCC | 1 cut(s) | 535 |
| BmrFI | CCNGG | 2 cut(s) | 230, 540 |
| BmsI | GCATC | 2 cut(s) | 193, 493 |
| BpiI | GAAGAC | 1 cut(s) | 342 |
| BpmI | CTGGAG | 1 cut(s) | 296 |
| BpuEI | CTTGAG | 2 cut(s) | 173, 240 |
| BsaHI | GRCGYC | 2 cut(s) | 516, 534 |
| BsaI | GGTCTC | 1 cut(s) | 361 |
| BsaJI | CCNNGG | 3 cut(s) | 476, 507, 538 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 478, 482 |
| Bse1I | ACTGG | 3 cut(s) | 88, 148, 313 |
| BseBI | CCWGG | 2 cut(s) | 230, 540 |
| BseDI | CCNNGG | 3 cut(s) | 476, 507, 538 |
| BseGI | GGATG | 3 cut(s) | 279, 307, 517 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 478, 482 |
| BseMII | CTCAG | 1 cut(s) | 36 |
| BseNI | ACTGG | 3 cut(s) | 88, 148, 313 |
| BseRI | GAGGAG | 1 cut(s) | 90 |
| BseXI | GCAGC | 1 cut(s) | 22 |
| BshNI | GGYRCC | 1 cut(s) | 533 |
| BsiHKCI | CYCGRG | 1 cut(s) | 218 |
| BslFI | GGGAC | 1 cut(s) | 476 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 478, 482 |
| BsmAI | GTCTC | 1 cut(s) | 361 |
| BsmFI | GGGAC | 1 cut(s) | 476 |
| Bso31I | GGTCTC | 1 cut(s) | 361 |
| BsoBI | CYCGRG | 1 cut(s) | 218 |
| Bsp19I | CCATGG | 1 cut(s) | 507 |
| BspACI | CCGC | 2 cut(s) | 178, 430 |
| BspCNI | CTCAG | 1 cut(s) | 37 |
| BspLI | GGNNCC | 1 cut(s) | 535 |
| BspT107I | GGYRCC | 1 cut(s) | 533 |
| BspTNI | GGTCTC | 1 cut(s) | 361 |
| BsrI | ACTGG | 3 cut(s) | 88, 148, 313 |
| BssECI | CCNNGG | 3 cut(s) | 476, 507, 538 |
| BssNI | GRCGYC | 2 cut(s) | 516, 534 |
| BssT1I | CCWWGG | 2 cut(s) | 476, 507 |
| Bst2UI | CCWGG | 2 cut(s) | 230, 540 |
| Bst4CI | ACNGT | 3 cut(s) | 14, 30, 244 |
| BstACI | GRCGYC | 2 cut(s) | 516, 534 |
| BstC8I | GCNNGC | 3 cut(s) | 182, 252, 484 |
| BstDEI | CTNAG | 2 cut(s) | 45, 406 |
| BstDSI | CCRYGG | 1 cut(s) | 507 |
| BstF5I | GGATG | 3 cut(s) | 279, 307, 517 |
| BstH2I | RGCGCY | 1 cut(s) | 537 |
| BstHHI | GCGC | 2 cut(s) | 488, 536 |
| BstMAI | GTCTC | 1 cut(s) | 361 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 266 |
| BstNI | CCWGG | 2 cut(s) | 230, 540 |
| BstSCI | CCNGG | 2 cut(s) | 228, 538 |
| BstSFI | CTRYAG | 1 cut(s) | 195 |
| BstV1I | GCAGC | 1 cut(s) | 22 |
| BstV2I | GAAGAC | 1 cut(s) | 342 |
| BtgI | CCRYGG | 1 cut(s) | 507 |
| BtrI | CACGTC | 1 cut(s) | 235 |
| BtsCI | GGATG | 3 cut(s) | 279, 307, 517 |
| BtsI | GCAGTG | 1 cut(s) | 453 |
| BtsIMutI | CAGTG | 2 cut(s) | 42, 453 |
| Cac8I | GCNNGC | 3 cut(s) | 182, 252, 484 |
| CaiI | CAGNNNCTG | 1 cut(s) | 455 |
| CfoI | GCGC | 2 cut(s) | 488, 536 |
| CseI | GACGC | 1 cut(s) | 505 |
| Csp6I | GTAC | 1 cut(s) | 316 |
| CviAII | CATG | 4 cut(s) | 386, 500, 508, 524 |
| CviQI | GTAC | 1 cut(s) | 316 |
| DdeI | CTNAG | 2 cut(s) | 45, 406 |
| DinI | GGCGCC | 1 cut(s) | 535 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 17 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 17 |
| EciI | GGCGGA | 1 cut(s) | 167 |
| Eco130I | CCWWGG | 2 cut(s) | 476, 507 |
| Eco31I | GGTCTC | 1 cut(s) | 361 |
| Eco32I | GATATC | 2 cut(s) | 155, 175 |
| Eco88I | CYCGRG | 1 cut(s) | 218 |
| EcoRII | CCWGG | 2 cut(s) | 228, 538 |
| EcoRV | GATATC | 2 cut(s) | 155, 175 |
| EcoT14I | CCWWGG | 2 cut(s) | 476, 507 |
| EgeI | GGCGCC | 1 cut(s) | 535 |
| EheI | GGCGCC | 1 cut(s) | 535 |
| ErhI | CCWWGG | 2 cut(s) | 476, 507 |
| FaeI | CATG | 4 cut(s) | 389, 503, 511, 527 |
| FaqI | GGGAC | 1 cut(s) | 476 |
| FatI | CATG | 4 cut(s) | 385, 499, 507, 523 |
| Fnu4HI | GCNGC | 1 cut(s) | 36 |
| FokI | GGATG | 3 cut(s) | 266, 314, 524 |
| Fsp4HI | GCNGC | 1 cut(s) | 36 |
| FspBI | CTAG | 2 cut(s) | 225, 477 |
| GlaI | GCGC | 2 cut(s) | 487, 535 |
| GluI | GCNGC | 1 cut(s) | 36 |
| GsuI | CTGGAG | 1 cut(s) | 296 |
| HaeII | RGCGCY | 1 cut(s) | 537 |
| HgaI | GACGC | 1 cut(s) | 505 |
| HhaI | GCGC | 2 cut(s) | 488, 536 |
| Hin1I | GRCGYC | 2 cut(s) | 516, 534 |
| Hin1II | CATG | 4 cut(s) | 389, 503, 511, 527 |
| Hin6I | GCGC | 2 cut(s) | 486, 534 |
| HinP1I | GCGC | 2 cut(s) | 486, 534 |
| HindIII | AAGCTT | 1 cut(s) | 258 |
| HinfI | GANTC | 6 cut(s) | 201, 214, 289, 305, 389, 552 |
| HphI | GGTGA | 3 cut(s) | 539, 547, 554 |
| Hpy166II | GTNNAC | 2 cut(s) | 10, 466 |
| Hpy188I | TCNGA | 1 cut(s) | 55 |
| Hpy188III | TCNNGA | 3 cut(s) | 170, 218, 401 |
| Hpy8I | GTNNAC | 2 cut(s) | 10, 466 |
| HpyAV | CCTTC | 1 cut(s) | 339 |
| HpyCH4III | ACNGT | 3 cut(s) | 14, 30, 244 |
| HpyCH4IV | ACGT | 2 cut(s) | 234, 381 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 266 |
| HpyF3I | CTNAG | 2 cut(s) | 45, 406 |
| HpySE526I | ACGT | 2 cut(s) | 234, 381 |
| Hsp92I | GRCGYC | 2 cut(s) | 516, 534 |
| Hsp92II | CATG | 4 cut(s) | 389, 503, 511, 527 |
| HspAI | GCGC | 2 cut(s) | 486, 534 |
| KasI | GGCGCC | 1 cut(s) | 533 |
| LmnI | GCTCC | 3 cut(s) | 77, 133, 315 |
| Lsp1109I | GCAGC | 1 cut(s) | 22 |
| LweI | GCATC | 2 cut(s) | 193, 493 |
| MaeI | CTAG | 2 cut(s) | 225, 477 |
| MaeII | ACGT | 2 cut(s) | 234, 381 |
| MaeIII | GTNAC | 2 cut(s) | 40, 104 |
| MboII | GAAGA | 2 cut(s) | 344, 347 |
| MluCI | AATT | 1 cut(s) | 116 |
| Mly113I | GGCGCC | 1 cut(s) | 534 |
| MlyI | GAGTC | 2 cut(s) | 283, 383 |
| MnlI | CCTC | 3 cut(s) | 68, 437, 469 |
| MslI | CAYNNNNRTG | 3 cut(s) | 284, 525, 528 |
| MspR9I | CCNGG | 2 cut(s) | 230, 540 |
| MvaI | CCWGG | 2 cut(s) | 230, 540 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 266 |
| NarI | GGCGCC | 1 cut(s) | 534 |
| NcoI | CCATGG | 1 cut(s) | 507 |
| NlaIII | CATG | 4 cut(s) | 389, 503, 511, 527 |
| NlaIV | GGNNCC | 1 cut(s) | 535 |
| NmuCI | GTSAC | 1 cut(s) | 40 |
| PaeR7I | CTCGAG | 1 cut(s) | 218 |
| PfeI | GAWTC | 4 cut(s) | 201, 214, 305, 552 |
| PkrI | GCNGC | 1 cut(s) | 37 |
| PleI | GAGTC | 2 cut(s) | 283, 383 |
| PluTI | GGCGCC | 1 cut(s) | 537 |
| PpsI | GAGTC | 2 cut(s) | 283, 383 |
| Psp6I | CCWGG | 2 cut(s) | 228, 538 |
| PspGI | CCWGG | 2 cut(s) | 228, 538 |
| PspN4I | GGNNCC | 1 cut(s) | 535 |
| PstNI | CAGNNNCTG | 1 cut(s) | 455 |
| RsaI | GTAC | 1 cut(s) | 317 |
| RsaNI | GTAC | 1 cut(s) | 316 |
| RseI | CAYNNNNRTG | 3 cut(s) | 284, 525, 528 |
| SatI | GCNGC | 1 cut(s) | 36 |
| SchI | GAGTC | 2 cut(s) | 283, 383 |
| ScrFI | CCNGG | 2 cut(s) | 230, 540 |
| SetI | ASST | 7 cut(s) | 111, 164, 237, 256, 262, 384, 544 |
| SfaNI | GCATC | 2 cut(s) | 193, 493 |
| SfcI | CTRYAG | 1 cut(s) | 195 |
| SfoI | GGCGCC | 1 cut(s) | 535 |
| Sfr274I | CTCGAG | 1 cut(s) | 218 |
| SlaI | CTCGAG | 1 cut(s) | 218 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 284, 525, 528 |
| SmlI | CTYRAG | 3 cut(s) | 188, 218, 255 |
| SmoI | CTYRAG | 3 cut(s) | 188, 218, 255 |
| Sse9I | AATT | 1 cut(s) | 116 |
| SsiI | CCGC | 2 cut(s) | 178, 430 |
| SspDI | GGCGCC | 1 cut(s) | 533 |
| SspMI | CTAG | 2 cut(s) | 225, 477 |
| StyD4I | CCNGG | 2 cut(s) | 228, 538 |
| StyI | CCWWGG | 2 cut(s) | 476, 507 |
| TaaI | ACNGT | 3 cut(s) | 14, 30, 244 |
| TaiI | ACGT | 2 cut(s) | 237, 384 |
| TaqI | TCGA | 2 cut(s) | 219, 363 |
| TasI | AATT | 1 cut(s) | 116 |
| TfiI | GAWTC | 4 cut(s) | 201, 214, 305, 552 |
| TscAI | CASTG | 2 cut(s) | 49, 460 |
| TseFI | GTSAC | 1 cut(s) | 40 |
| TseI | GCWGC | 1 cut(s) | 35 |
| Tsp45I | GTSAC | 1 cut(s) | 40 |
| TspDTI | ATGAA | 3 cut(s) | 17, 341, 345 |
| TspGWI | ACGGA | 1 cut(s) | 451 |
| TspRI | CASTG | 2 cut(s) | 49, 460 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 479, 527 |
| XhoI | CTCGAG | 1 cut(s) | 218 |
| XmaJI | CCTAGG | 1 cut(s) | 476 |
| XspI | CTAG | 2 cut(s) | 225, 477 |