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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 138 |
| AciI | CCGC | 2 cut(s) | 79, 286 |
| AclWI | GGATC | 1 cut(s) | 476 |
| AcsI | RAATTY | 1 cut(s) | 353 |
| AcyI | GRCGYC | 1 cut(s) | 135 |
| AfaI | GTAC | 1 cut(s) | 248 |
| AluBI | AGCT | 5 cut(s) | 155, 161, 308, 487, 497 |
| AluI | AGCT | 5 cut(s) | 155, 161, 308, 487, 497 |
| Alw21I | GWGCWC | 1 cut(s) | 489 |
| Alw26I | GTCTC | 1 cut(s) | 421 |
| AlwI | GGATC | 1 cut(s) | 476 |
| Ama87I | CYCGRG | 1 cut(s) | 119 |
| AoxI | GGCC | 1 cut(s) | 93 |
| ApeKI | GCWGC | 1 cut(s) | 179 |
| ApoI | RAATTY | 1 cut(s) | 353 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 330 |
| AvaI | CYCGRG | 1 cut(s) | 119 |
| BanII | GRGCYC | 1 cut(s) | 489 |
| BbsI | GAAGAC | 2 cut(s) | 273, 401 |
| Bbv12I | GWGCWC | 1 cut(s) | 489 |
| BbvI | GCAGC | 1 cut(s) | 191 |
| BccI | CCATC | 2 cut(s) | 57, 421 |
| BcoDI | GTCTC | 1 cut(s) | 421 |
| BfaI | CTAG | 1 cut(s) | 126 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 188 |
| BglII | AGATCT | 1 cut(s) | 551 |
| BisI | GCNGC | 1 cut(s) | 180 |
| BlsI | GCNGC | 1 cut(s) | 181 |
| BmeT110I | CYCGRG | 1 cut(s) | 119 |
| BmiI | GGNNCC | 1 cut(s) | 281 |
| BmsI | GCATC | 1 cut(s) | 94 |
| BpiI | GAAGAC | 2 cut(s) | 273, 401 |
| BpuEI | CTTGAG | 3 cut(s) | 74, 141, 227 |
| Bsa29I | ATCGAT | 1 cut(s) | 450 |
| BsaHI | GRCGYC | 1 cut(s) | 135 |
| Bse1I | ACTGG | 1 cut(s) | 49 |
| BseCI | ATCGAT | 1 cut(s) | 450 |
| BseGI | GGATG | 3 cut(s) | 210, 238, 525 |
| BseNI | ACTGG | 1 cut(s) | 49 |
| BseRI | GAGGAG | 1 cut(s) | 272 |
| BseXI | GCAGC | 1 cut(s) | 191 |
| BshFI | GGCC | 1 cut(s) | 95 |
| BshVI | ATCGAT | 1 cut(s) | 450 |
| BsiHKAI | GWGCWC | 1 cut(s) | 489 |
| BsiHKCI | CYCGRG | 1 cut(s) | 119 |
| BsmAI | GTCTC | 1 cut(s) | 421 |
| BsmBI | CGTCTC | 1 cut(s) | 421 |
| BsnI | GGCC | 1 cut(s) | 95 |
| BsoBI | CYCGRG | 1 cut(s) | 119 |
| Bsp1286I | GDGCHC | 1 cut(s) | 489 |
| Bsp143I | GATC | 3 cut(s) | 369, 468, 551 |
| BspACI | CCGC | 2 cut(s) | 79, 286 |
| BspANI | GGCC | 1 cut(s) | 95 |
| BspDI | ATCGAT | 1 cut(s) | 450 |
| BspHI | TCATGA | 1 cut(s) | 481 |
| BspLI | GGNNCC | 1 cut(s) | 281 |
| BspPI | GGATC | 1 cut(s) | 476 |
| BsrI | ACTGG | 1 cut(s) | 49 |
| BssMI | GATC | 3 cut(s) | 369, 468, 551 |
| BssNI | GRCGYC | 1 cut(s) | 135 |
| Bst4CI | ACNGT | 1 cut(s) | 145 |
| BstACI | GRCGYC | 1 cut(s) | 135 |
| BstC8I | GCNNGC | 2 cut(s) | 83, 153 |
| BstDEI | CTNAG | 2 cut(s) | 184, 435 |
| BstF5I | GGATG | 3 cut(s) | 210, 238, 525 |
| BstKTI | GATC | 3 cut(s) | 372, 471, 554 |
| BstMAI | GTCTC | 1 cut(s) | 421 |
| BstMBI | GATC | 3 cut(s) | 369, 468, 551 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 167, 176, 188, 197 |
| BstV1I | GCAGC | 1 cut(s) | 191 |
| BstV2I | GAAGAC | 2 cut(s) | 273, 401 |
| BstX2I | RGATCY | 1 cut(s) | 551 |
| BstYI | RGATCY | 1 cut(s) | 551 |
| Bsu15I | ATCGAT | 1 cut(s) | 450 |
| BsuRI | GGCC | 1 cut(s) | 95 |
| BsuTUI | ATCGAT | 1 cut(s) | 450 |
| BtgZI | GCGATG | 1 cut(s) | 395 |
| BtsCI | GGATG | 3 cut(s) | 210, 238, 525 |
| Cac8I | GCNNGC | 2 cut(s) | 83, 153 |
| CciI | TCATGA | 1 cut(s) | 481 |
| ClaI | ATCGAT | 1 cut(s) | 450 |
| Csp6I | GTAC | 1 cut(s) | 247 |
| CviAII | CATG | 1 cut(s) | 482 |
| CviQI | GTAC | 1 cut(s) | 247 |
| DdeI | CTNAG | 2 cut(s) | 184, 435 |
| DpnI | GATC | 3 cut(s) | 371, 470, 553 |
| DpnII | GATC | 3 cut(s) | 369, 468, 551 |
| EciI | GGCGGA | 1 cut(s) | 68 |
| Ecl136II | GAGCTC | 1 cut(s) | 487 |
| Eco24I | GRGCYC | 1 cut(s) | 489 |
| Eco32I | GATATC | 1 cut(s) | 56 |
| Eco53kI | GAGCTC | 1 cut(s) | 487 |
| Eco88I | CYCGRG | 1 cut(s) | 119 |
| EcoICRI | GAGCTC | 1 cut(s) | 487 |
| EcoRV | GATATC | 1 cut(s) | 56 |
| EcoT38I | GRGCYC | 1 cut(s) | 489 |
| Esp3I | CGTCTC | 1 cut(s) | 421 |
| FaeI | CATG | 1 cut(s) | 485 |
| FatI | CATG | 1 cut(s) | 481 |
| FauNDI | CATATG | 1 cut(s) | 228 |
| Fnu4HI | GCNGC | 1 cut(s) | 180 |
| FokI | GGATG | 3 cut(s) | 197, 245, 512 |
| FriOI | GRGCYC | 1 cut(s) | 489 |
| Fsp4HI | GCNGC | 1 cut(s) | 180 |
| FspBI | CTAG | 1 cut(s) | 126 |
| GluI | GCNGC | 1 cut(s) | 180 |
| HaeIII | GGCC | 1 cut(s) | 95 |
| Hin1I | GRCGYC | 1 cut(s) | 135 |
| Hin1II | CATG | 1 cut(s) | 485 |
| HindIII | AAGCTT | 1 cut(s) | 159 |
| HinfI | GANTC | 6 cut(s) | 102, 115, 220, 236, 397, 447 |
| Hpy188I | TCNGA | 1 cut(s) | 325 |
| Hpy188III | TCNNGA | 6 cut(s) | 71, 119, 131, 311, 482, 549 |
| HpyAV | CCTTC | 3 cut(s) | 190, 270, 418 |
| HpyCH4III | ACNGT | 1 cut(s) | 145 |
| HpyCH4IV | ACGT | 1 cut(s) | 135 |
| HpyCH4V | TGCA | 1 cut(s) | 422 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 167, 176, 188, 197 |
| HpyF3I | CTNAG | 2 cut(s) | 184, 435 |
| HpySE526I | ACGT | 1 cut(s) | 135 |
| Hsp92I | GRCGYC | 1 cut(s) | 135 |
| Hsp92II | CATG | 1 cut(s) | 485 |
| Kzo9I | GATC | 3 cut(s) | 369, 468, 551 |
| LmnI | GCTCC | 4 cut(s) | 34, 176, 285, 494 |
| LpnPI | CCDG | 6 cut(s) | 23, 30, 95, 116, 119, 286 |
| Lsp1109I | GCAGC | 1 cut(s) | 191 |
| LweI | GCATC | 1 cut(s) | 94 |
| MaeI | CTAG | 1 cut(s) | 126 |
| MaeII | ACGT | 1 cut(s) | 135 |
| MaeIII | GTNAC | 2 cut(s) | 5, 454 |
| MalI | GATC | 3 cut(s) | 371, 470, 553 |
| MboI | GATC | 3 cut(s) | 369, 468, 551 |
| MboII | GAAGA | 2 cut(s) | 278, 406 |
| MflI | RGATCY | 1 cut(s) | 551 |
| MhlI | GDGCHC | 1 cut(s) | 489 |
| MluCI | AATT | 3 cut(s) | 17, 353, 544 |
| MlyI | GAGTC | 2 cut(s) | 214, 391 |
| MnlI | CCTC | 3 cut(s) | 181, 293, 422 |
| MroXI | GAANNNNTTC | 1 cut(s) | 330 |
| MseI | TTAA | 3 cut(s) | 300, 339, 347 |
| MslI | CAYNNNNRTG | 3 cut(s) | 215, 231, 530 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 167, 176, 188, 197 |
| NdeI | CATATG | 1 cut(s) | 228 |
| NdeII | GATC | 3 cut(s) | 369, 468, 551 |
| NlaIII | CATG | 1 cut(s) | 485 |
| NlaIV | GGNNCC | 1 cut(s) | 281 |
| PaeR7I | CTCGAG | 1 cut(s) | 119 |
| PagI | TCATGA | 1 cut(s) | 481 |
| PdmI | GAANNNNTTC | 1 cut(s) | 330 |
| PfeI | GAWTC | 4 cut(s) | 102, 115, 236, 447 |
| PkrI | GCNGC | 1 cut(s) | 181 |
| PleI | GAGTC | 2 cut(s) | 214, 391 |
| PpsI | GAGTC | 2 cut(s) | 214, 391 |
| Psp124BI | GAGCTC | 1 cut(s) | 489 |
| PspN4I | GGNNCC | 1 cut(s) | 281 |
| PsuI | RGATCY | 1 cut(s) | 551 |
| RsaI | GTAC | 1 cut(s) | 248 |
| RsaNI | GTAC | 1 cut(s) | 247 |
| RseI | CAYNNNNRTG | 3 cut(s) | 215, 231, 530 |
| SacI | GAGCTC | 1 cut(s) | 489 |
| SaqAI | TTAA | 3 cut(s) | 300, 339, 347 |
| SatI | GCNGC | 1 cut(s) | 180 |
| Sau3AI | GATC | 3 cut(s) | 369, 468, 551 |
| SchI | GAGTC | 2 cut(s) | 214, 391 |
| SduI | GDGCHC | 1 cut(s) | 489 |
| SetI | ASST | 9 cut(s) | 12, 138, 157, 163, 310, 410, 479, 489, 499 |
| SfaNI | GCATC | 1 cut(s) | 94 |
| Sfr274I | CTCGAG | 1 cut(s) | 119 |
| SlaI | CTCGAG | 1 cut(s) | 119 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 215, 231, 530 |
| SmlI | CTYRAG | 4 cut(s) | 89, 119, 156, 242 |
| SmoI | CTYRAG | 4 cut(s) | 89, 119, 156, 242 |
| Sse9I | AATT | 3 cut(s) | 17, 353, 544 |
| SsiI | CCGC | 2 cut(s) | 79, 286 |
| SspMI | CTAG | 1 cut(s) | 126 |
| SstI | GAGCTC | 1 cut(s) | 489 |
| TaaI | ACNGT | 1 cut(s) | 145 |
| TaiI | ACGT | 1 cut(s) | 138 |
| TaqI | TCGA | 4 cut(s) | 120, 445, 450, 548 |
| TasI | AATT | 3 cut(s) | 17, 353, 544 |
| TfiI | GAWTC | 4 cut(s) | 102, 115, 236, 447 |
| Tru1I | TTAA | 3 cut(s) | 300, 339, 347 |
| Tru9I | TTAA | 3 cut(s) | 300, 339, 347 |
| TseI | GCWGC | 1 cut(s) | 179 |
| TspDTI | ATGAA | 4 cut(s) | 272, 365, 470, 515 |
| TspGWI | ACGGA | 1 cut(s) | 481 |
| XapI | RAATTY | 1 cut(s) | 353 |
| XhoI | CTCGAG | 1 cut(s) | 119 |
| XmnI | GAANNNNTTC | 1 cut(s) | 330 |
| XspI | CTAG | 1 cut(s) | 126 |
| ZraI | GACGTC | 1 cut(s) | 136 |