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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 228 |
| AccB1I | GGYRCC | 2 cut(s) | 183, 341 |
| AccII | CGCG | 1 cut(s) | 168 |
| AccIII | TCCGGA | 1 cut(s) | 148 |
| AciI | CCGC | 1 cut(s) | 483 |
| AclWI | GGATC | 2 cut(s) | 50, 120 |
| AcoI | YGGCCR | 1 cut(s) | 328 |
| AcyI | GRCGYC | 2 cut(s) | 184, 342 |
| AdeI | CACNNNGTG | 1 cut(s) | 523 |
| AfaI | GTAC | 1 cut(s) | 450 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 179 |
| AgsI | TTSAA | 2 cut(s) | 123, 379 |
| AluBI | AGCT | 4 cut(s) | 61, 71, 464, 515 |
| AluI | AGCT | 4 cut(s) | 61, 71, 464, 515 |
| Alw21I | GWGCWC | 1 cut(s) | 63 |
| AlwI | GGATC | 2 cut(s) | 50, 120 |
| Aor13HI | TCCGGA | 1 cut(s) | 148 |
| AoxI | GGCC | 1 cut(s) | 328 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 86, 118 |
| AspLEI | GCGC | 3 cut(s) | 170, 186, 344 |
| AspS9I | GGNCC | 1 cut(s) | 230 |
| AsuHPI | GGTGA | 1 cut(s) | 472 |
| AvaII | GGWCC | 1 cut(s) | 230 |
| BalI | TGGCCA | 1 cut(s) | 330 |
| BanI | GGYRCC | 2 cut(s) | 183, 341 |
| BanII | GRGCYC | 1 cut(s) | 63 |
| BauI | CACGAG | 1 cut(s) | 465 |
| Bbv12I | GWGCWC | 1 cut(s) | 63 |
| BccI | CCATC | 1 cut(s) | 369 |
| BclI | TGATCA | 1 cut(s) | 439 |
| BfaI | CTAG | 1 cut(s) | 551 |
| BfoI | RGCGCY | 2 cut(s) | 187, 345 |
| Bme18I | GGWCC | 1 cut(s) | 230 |
| BmgT120I | GGNCC | 1 cut(s) | 230 |
| BmiI | GGNNCC | 3 cut(s) | 185, 284, 343 |
| BsaHI | GRCGYC | 2 cut(s) | 184, 342 |
| BsaJI | CCNNGG | 1 cut(s) | 129 |
| BsaWI | WCCGGW | 1 cut(s) | 148 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 179 |
| BseAI | TCCGGA | 1 cut(s) | 148 |
| BseDI | CCNNGG | 1 cut(s) | 129 |
| BseGI | GGATG | 1 cut(s) | 361 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 179 |
| Bsh1236I | CGCG | 1 cut(s) | 168 |
| BshFI | GGCC | 1 cut(s) | 330 |
| BshNI | GGYRCC | 2 cut(s) | 183, 341 |
| BsiHKAI | GWGCWC | 1 cut(s) | 63 |
| BsiSI | CCGG | 1 cut(s) | 149 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 179 |
| BsnI | GGCC | 1 cut(s) | 330 |
| Bsp1286I | GDGCHC | 1 cut(s) | 63 |
| Bsp13I | TCCGGA | 1 cut(s) | 148 |
| Bsp143I | GATC | 5 cut(s) | 42, 125, 439, 535, 547 |
| BspACI | CCGC | 1 cut(s) | 483 |
| BspANI | GGCC | 1 cut(s) | 330 |
| BspEI | TCCGGA | 1 cut(s) | 148 |
| BspFNI | CGCG | 1 cut(s) | 168 |
| BspHI | TCATGA | 1 cut(s) | 55 |
| BspLI | GGNNCC | 3 cut(s) | 185, 284, 343 |
| BspPI | GGATC | 2 cut(s) | 50, 120 |
| BspT107I | GGYRCC | 2 cut(s) | 183, 341 |
| BssECI | CCNNGG | 1 cut(s) | 129 |
| BssMI | GATC | 5 cut(s) | 42, 125, 439, 535, 547 |
| BssNI | GRCGYC | 2 cut(s) | 184, 342 |
| BssSI | CACGAG | 1 cut(s) | 465 |
| Bst2BI | CACGAG | 1 cut(s) | 465 |
| BstACI | GRCGYC | 2 cut(s) | 184, 342 |
| BstDEI | CTNAG | 3 cut(s) | 9, 206, 354 |
| BstDSI | CCRYGG | 1 cut(s) | 129 |
| BstF5I | GGATG | 1 cut(s) | 361 |
| BstFNI | CGCG | 1 cut(s) | 168 |
| BstH2I | RGCGCY | 2 cut(s) | 187, 345 |
| BstHHI | GCGC | 3 cut(s) | 170, 186, 344 |
| BstKTI | GATC | 5 cut(s) | 45, 128, 442, 538, 550 |
| BstMBI | GATC | 5 cut(s) | 42, 125, 439, 535, 547 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 190, 491, 512 |
| BstUI | CGCG | 1 cut(s) | 168 |
| BstX2I | RGATCY | 1 cut(s) | 125 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 338 |
| BstYI | RGATCY | 1 cut(s) | 125 |
| BsuRI | GGCC | 1 cut(s) | 330 |
| BtgI | CCRYGG | 1 cut(s) | 129 |
| BtsCI | GGATG | 1 cut(s) | 361 |
| CciI | TCATGA | 1 cut(s) | 55 |
| CfoI | GCGC | 3 cut(s) | 170, 186, 344 |
| Cfr13I | GGNCC | 1 cut(s) | 230 |
| CseI | GACGC | 1 cut(s) | 380 |
| Csp6I | GTAC | 1 cut(s) | 449 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 111, 146 |
| CviAII | CATG | 3 cut(s) | 56, 92, 332 |
| CviJI | RGCY | 6 cut(s) | 61, 71, 330, 360, 464, 515 |
| CviKI_1 | RGCY | 6 cut(s) | 61, 71, 330, 360, 464, 515 |
| CviQI | GTAC | 1 cut(s) | 449 |
| DdeI | CTNAG | 3 cut(s) | 9, 206, 354 |
| DinI | GGCGCC | 2 cut(s) | 185, 343 |
| DpnI | GATC | 5 cut(s) | 44, 127, 441, 537, 549 |
| DpnII | GATC | 5 cut(s) | 42, 125, 439, 535, 547 |
| DraIII | CACNNNGTG | 1 cut(s) | 523 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 228 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 228 |
| EaeI | YGGCCR | 1 cut(s) | 328 |
| Ecl136II | GAGCTC | 1 cut(s) | 61 |
| Eco24I | GRGCYC | 1 cut(s) | 63 |
| Eco47I | GGWCC | 1 cut(s) | 230 |
| Eco53kI | GAGCTC | 1 cut(s) | 61 |
| EcoICRI | GAGCTC | 1 cut(s) | 61 |
| EcoT38I | GRGCYC | 1 cut(s) | 63 |
| EgeI | GGCGCC | 2 cut(s) | 185, 343 |
| EheI | GGCGCC | 2 cut(s) | 185, 343 |
| FaeI | CATG | 3 cut(s) | 59, 95, 335 |
| FatI | CATG | 3 cut(s) | 55, 91, 331 |
| FbaI | TGATCA | 1 cut(s) | 439 |
| FokI | GGATG | 1 cut(s) | 348 |
| FriOI | GRGCYC | 1 cut(s) | 63 |
| FspBI | CTAG | 1 cut(s) | 551 |
| GlaI | GCGC | 3 cut(s) | 169, 185, 343 |
| HaeII | RGCGCY | 2 cut(s) | 187, 345 |
| HaeIII | GGCC | 1 cut(s) | 330 |
| HapII | CCGG | 1 cut(s) | 149 |
| HgaI | GACGC | 1 cut(s) | 380 |
| HhaI | GCGC | 3 cut(s) | 170, 186, 344 |
| Hin1I | GRCGYC | 2 cut(s) | 184, 342 |
| Hin1II | CATG | 3 cut(s) | 59, 95, 335 |
| Hin6I | GCGC | 3 cut(s) | 168, 184, 342 |
| HinP1I | GCGC | 3 cut(s) | 168, 184, 342 |
| HincII | GTYRAC | 1 cut(s) | 296 |
| HindII | GTYRAC | 1 cut(s) | 296 |
| HinfI | GANTC | 1 cut(s) | 152 |
| HpaII | CCGG | 1 cut(s) | 149 |
| HphI | GGTGA | 1 cut(s) | 472 |
| Hpy166II | GTNNAC | 2 cut(s) | 296, 451 |
| Hpy188I | TCNGA | 1 cut(s) | 439 |
| Hpy188III | TCNNGA | 8 cut(s) | 56, 123, 149, 219, 423, 467, 539, 551 |
| Hpy8I | GTNNAC | 2 cut(s) | 296, 451 |
| HpyAV | CCTTC | 1 cut(s) | 248 |
| HpyCH4IV | ACGT | 1 cut(s) | 298 |
| HpyCH4V | TGCA | 1 cut(s) | 35 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 190, 491, 512 |
| HpyF3I | CTNAG | 3 cut(s) | 9, 206, 354 |
| HpySE526I | ACGT | 1 cut(s) | 298 |
| Hsp92I | GRCGYC | 2 cut(s) | 184, 342 |
| Hsp92II | CATG | 3 cut(s) | 59, 95, 335 |
| HspAI | GCGC | 3 cut(s) | 168, 184, 342 |
| KasI | GGCGCC | 2 cut(s) | 183, 341 |
| Kpn2I | TCCGGA | 1 cut(s) | 148 |
| Ksp22I | TGATCA | 1 cut(s) | 439 |
| Kzo9I | GATC | 5 cut(s) | 42, 125, 439, 535, 547 |
| LmnI | GCTCC | 1 cut(s) | 68 |
| LpnPI | CCDG | 4 cut(s) | 162, 204, 213, 312 |
| MaeI | CTAG | 1 cut(s) | 551 |
| MaeII | ACGT | 1 cut(s) | 298 |
| MaeIII | GTNAC | 2 cut(s) | 4, 478 |
| MalI | GATC | 5 cut(s) | 44, 127, 441, 537, 549 |
| MboI | GATC | 5 cut(s) | 42, 125, 439, 535, 547 |
| MboII | GAAGA | 4 cut(s) | 121, 482, 545, 554 |
| MflI | RGATCY | 1 cut(s) | 125 |
| MhlI | GDGCHC | 1 cut(s) | 63 |
| MlsI | TGGCCA | 1 cut(s) | 330 |
| MluCI | AATT | 4 cut(s) | 118, 157, 259, 474 |
| MluNI | TGGCCA | 1 cut(s) | 330 |
| Mly113I | GGCGCC | 2 cut(s) | 184, 342 |
| MnlI | CCTC | 6 cut(s) | 173, 284, 304, 308, 334, 396 |
| Mox20I | TGGCCA | 1 cut(s) | 330 |
| MroI | TCCGGA | 1 cut(s) | 148 |
| MscI | TGGCCA | 1 cut(s) | 330 |
| MseI | TTAA | 1 cut(s) | 30 |
| MslI | CAYNNNNRTG | 3 cut(s) | 104, 336, 366 |
| Msp20I | TGGCCA | 1 cut(s) | 330 |
| MspI | CCGG | 1 cut(s) | 149 |
| MvnI | CGCG | 1 cut(s) | 168 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 190, 491, 512 |
| NarI | GGCGCC | 2 cut(s) | 184, 342 |
| NdeII | GATC | 5 cut(s) | 42, 125, 439, 535, 547 |
| NlaIII | CATG | 3 cut(s) | 59, 95, 335 |
| NlaIV | GGNNCC | 3 cut(s) | 185, 284, 343 |
| NmuCI | GTSAC | 1 cut(s) | 478 |
| PagI | TCATGA | 1 cut(s) | 55 |
| PfeI | GAWTC | 1 cut(s) | 152 |
| PluTI | GGCGCC | 2 cut(s) | 187, 345 |
| Psp124BI | GAGCTC | 1 cut(s) | 63 |
| PspN4I | GGNNCC | 3 cut(s) | 185, 284, 343 |
| PspPI | GGNCC | 1 cut(s) | 230 |
| PsuI | RGATCY | 1 cut(s) | 125 |
| RsaI | GTAC | 1 cut(s) | 450 |
| RsaNI | GTAC | 1 cut(s) | 449 |
| RseI | CAYNNNNRTG | 3 cut(s) | 104, 336, 366 |
| SacI | GAGCTC | 1 cut(s) | 63 |
| SaqAI | TTAA | 1 cut(s) | 30 |
| Sau3AI | GATC | 5 cut(s) | 42, 125, 439, 535, 547 |
| Sau96I | GGNCC | 1 cut(s) | 230 |
| SduI | GDGCHC | 1 cut(s) | 63 |
| SetI | ASST | 8 cut(s) | 53, 63, 73, 259, 295, 301, 466, 517 |
| SfoI | GGCGCC | 2 cut(s) | 185, 343 |
| SinI | GGWCC | 1 cut(s) | 230 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 104, 336, 366 |
| Sse9I | AATT | 4 cut(s) | 118, 157, 259, 474 |
| SsiI | CCGC | 1 cut(s) | 483 |
| SspDI | GGCGCC | 2 cut(s) | 183, 341 |
| SspMI | CTAG | 1 cut(s) | 551 |
| SstI | GAGCTC | 1 cut(s) | 63 |
| TaiI | ACGT | 1 cut(s) | 301 |
| TaqI | TCGA | 2 cut(s) | 19, 424 |
| TasI | AATT | 4 cut(s) | 118, 157, 259, 474 |
| TfiI | GAWTC | 1 cut(s) | 152 |
| Tru1I | TTAA | 1 cut(s) | 30 |
| Tru9I | TTAA | 1 cut(s) | 30 |
| TseFI | GTSAC | 1 cut(s) | 478 |
| Tsp45I | GTSAC | 1 cut(s) | 478 |
| TspDTI | ATGAA | 2 cut(s) | 44, 89 |
| TspGWI | ACGGA | 3 cut(s) | 55, 118, 295 |
| VpaK11BI | GGWCC | 1 cut(s) | 230 |
| XbaI | TCTAGA | 1 cut(s) | 550 |
| XspI | CTAG | 1 cut(s) | 551 |