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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 279 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 540 |
| AccB1I | GGYRCC | 1 cut(s) | 694 |
| AccII | CGCG | 2 cut(s) | 218, 684 |
| AccIII | TCCGGA | 1 cut(s) | 460 |
| AciI | CCGC | 4 cut(s) | 247, 630, 682, 737 |
| AclI | AACGTT | 1 cut(s) | 875 |
| AclWI | GGATC | 3 cut(s) | 61, 74, 840 |
| AcoI | YGGCCR | 1 cut(s) | 322 |
| AcyI | GRCGYC | 2 cut(s) | 695, 743 |
| AfaI | GTAC | 3 cut(s) | 231, 298, 861 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 491, 562, 663 |
| AflII | CTTAAG | 1 cut(s) | 89 |
| AflIII | ACRYGT | 1 cut(s) | 610 |
| AgsI | TTSAA | 5 cut(s) | 22, 167, 211, 262, 396 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 125, 157 |
| AluBI | AGCT | 4 cut(s) | 155, 185, 290, 801 |
| AluI | AGCT | 4 cut(s) | 155, 185, 290, 801 |
| Alw21I | GWGCWC | 2 cut(s) | 141, 592 |
| Alw26I | GTCTC | 3 cut(s) | 309, 382, 430 |
| Alw44I | GTGCAC | 1 cut(s) | 588 |
| AlwI | GGATC | 3 cut(s) | 61, 74, 840 |
| Aor13HI | TCCGGA | 1 cut(s) | 460 |
| AoxI | GGCC | 1 cut(s) | 322 |
| ApaLI | GTGCAC | 1 cut(s) | 588 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 291 |
| AspLEI | GCGC | 5 cut(s) | 50, 220, 482, 686, 697 |
| AspS9I | GGNCC | 1 cut(s) | 542 |
| AsuHPI | GGTGA | 1 cut(s) | 751 |
| AvaII | GGWCC | 1 cut(s) | 542 |
| BaeGI | GKGCMC | 1 cut(s) | 592 |
| BalI | TGGCCA | 1 cut(s) | 324 |
| BamHI | GGATCC | 1 cut(s) | 66 |
| BanI | GGYRCC | 1 cut(s) | 694 |
| BauI | CACGAG | 1 cut(s) | 433 |
| BbsI | GAAGAC | 2 cut(s) | 362, 814 |
| Bbv12I | GWGCWC | 2 cut(s) | 141, 592 |
| BccI | CCATC | 5 cut(s) | 92, 122, 228, 304, 937 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 60, 94 |
| BcoDI | GTCTC | 3 cut(s) | 309, 382, 430 |
| BfaI | CTAG | 3 cut(s) | 35, 107, 126 |
| BfmI | CTRYAG | 1 cut(s) | 472 |
| BfoI | RGCGCY | 1 cut(s) | 698 |
| BfrI | CTTAAG | 1 cut(s) | 89 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 692 |
| BglII | AGATCT | 1 cut(s) | 948 |
| Bme18I | GGWCC | 1 cut(s) | 542 |
| BmgT120I | GGNCC | 1 cut(s) | 542 |
| BmiI | GGNNCC | 5 cut(s) | 68, 596, 634, 696, 711 |
| BmsI | GCATC | 1 cut(s) | 793 |
| BpiI | GAAGAC | 2 cut(s) | 362, 814 |
| BpuEI | CTTGAG | 1 cut(s) | 482 |
| BsaBI | GATNNNNATC | 4 cut(s) | 347, 831, 947, 953 |
| BsaHI | GRCGYC | 2 cut(s) | 695, 743 |
| BsaI | GGTCTC | 1 cut(s) | 430 |
| BsaJI | CCNNGG | 4 cut(s) | 441, 486, 598, 643 |
| BsaWI | WCCGGW | 1 cut(s) | 460 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 125, 155 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 491, 562, 663 |
| Bse1I | ACTGG | 1 cut(s) | 49 |
| Bse8I | GATNNNNATC | 4 cut(s) | 347, 831, 947, 953 |
| BseAI | TCCGGA | 1 cut(s) | 460 |
| BseDI | CCNNGG | 4 cut(s) | 441, 486, 598, 643 |
| BseGI | GGATG | 3 cut(s) | 114, 762, 865 |
| BseJI | GATNNNNATC | 4 cut(s) | 347, 831, 947, 953 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 491, 562, 663 |
| BseNI | ACTGG | 1 cut(s) | 49 |
| BseSI | GKGCMC | 1 cut(s) | 592 |
| BsgI | GTGCAG | 1 cut(s) | 366 |
| Bsh1236I | CGCG | 2 cut(s) | 218, 684 |
| BshFI | GGCC | 1 cut(s) | 324 |
| BshNI | GGYRCC | 1 cut(s) | 694 |
| BsiHKAI | GWGCWC | 2 cut(s) | 141, 592 |
| BsiSI | CCGG | 1 cut(s) | 461 |
| BslFI | GGGAC | 1 cut(s) | 536 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 491, 562, 663 |
| BsmAI | GTCTC | 3 cut(s) | 309, 382, 430 |
| BsmBI | CGTCTC | 1 cut(s) | 382 |
| BsmFI | GGGAC | 1 cut(s) | 536 |
| BsnI | GGCC | 1 cut(s) | 324 |
| Bso31I | GGTCTC | 1 cut(s) | 430 |
| Bsp1286I | GDGCHC | 2 cut(s) | 141, 592 |
| Bsp13I | TCCGGA | 1 cut(s) | 460 |
| Bsp1407I | TGTACA | 1 cut(s) | 859 |
| Bsp143I | GATC | 8 cut(s) | 66, 348, 701, 790, 832, 936, 948, 954 |
| Bsp19I | CCATGG | 1 cut(s) | 643 |
| BspACI | CCGC | 4 cut(s) | 247, 630, 682, 737 |
| BspANI | GGCC | 1 cut(s) | 324 |
| BspEI | TCCGGA | 1 cut(s) | 460 |
| BspFNI | CGCG | 2 cut(s) | 218, 684 |
| BspHI | TCATGA | 1 cut(s) | 195 |
| BspLI | GGNNCC | 5 cut(s) | 68, 596, 634, 696, 711 |
| BspPI | GGATC | 3 cut(s) | 61, 74, 840 |
| BspQI | GCTCTTC | 1 cut(s) | 297 |
| BspT107I | GGYRCC | 1 cut(s) | 694 |
| BspTI | CTTAAG | 1 cut(s) | 89 |
| BspTNI | GGTCTC | 1 cut(s) | 430 |
| BsrGI | TGTACA | 1 cut(s) | 859 |
| BsrI | ACTGG | 1 cut(s) | 49 |
| BssECI | CCNNGG | 4 cut(s) | 441, 486, 598, 643 |
| BssMI | GATC | 8 cut(s) | 66, 348, 701, 790, 832, 936, 948, 954 |
| BssNI | GRCGYC | 2 cut(s) | 695, 743 |
| BssSI | CACGAG | 1 cut(s) | 433 |
| BssT1I | CCWWGG | 2 cut(s) | 486, 643 |
| Bst2BI | CACGAG | 1 cut(s) | 433 |
| Bst4CI | ACNGT | 1 cut(s) | 599 |
| Bst6I | CTCTTC | 1 cut(s) | 297 |
| BstACI | GRCGYC | 2 cut(s) | 695, 743 |
| BstAFI | CTTAAG | 1 cut(s) | 89 |
| BstAUI | TGTACA | 1 cut(s) | 859 |
| BstC8I | GCNNGC | 2 cut(s) | 153, 588 |
| BstDEI | CTNAG | 2 cut(s) | 450, 513 |
| BstDSI | CCRYGG | 3 cut(s) | 441, 598, 643 |
| BstF5I | GGATG | 3 cut(s) | 114, 762, 865 |
| BstFNI | CGCG | 2 cut(s) | 218, 684 |
| BstH2I | RGCGCY | 1 cut(s) | 698 |
| BstHHI | GCGC | 5 cut(s) | 50, 220, 482, 686, 697 |
| BstKTI | GATC | 8 cut(s) | 69, 351, 704, 793, 835, 939, 951, 957 |
| BstMAI | GTCTC | 3 cut(s) | 309, 382, 430 |
| BstMBI | GATC | 8 cut(s) | 66, 348, 701, 790, 832, 936, 948, 954 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 167, 176, 692, 781, 913 |
| BstSFI | CTRYAG | 1 cut(s) | 472 |
| BstSLI | GKGCMC | 1 cut(s) | 592 |
| BstUI | CGCG | 2 cut(s) | 218, 684 |
| BstV2I | GAAGAC | 2 cut(s) | 362, 814 |
| BstX2I | RGATCY | 2 cut(s) | 66, 948 |
| BstYI | RGATCY | 2 cut(s) | 66, 948 |
| BsuRI | GGCC | 1 cut(s) | 324 |
| BtgI | CCRYGG | 3 cut(s) | 441, 598, 643 |
| BtsCI | GGATG | 3 cut(s) | 114, 762, 865 |
| BtsIMutI | CAGTG | 1 cut(s) | 383 |
| Cac8I | GCNNGC | 2 cut(s) | 153, 588 |
| CciI | TCATGA | 1 cut(s) | 195 |
| CfoI | GCGC | 5 cut(s) | 50, 220, 482, 686, 697 |
| Cfr13I | GGNCC | 1 cut(s) | 542 |
| CseI | GACGC | 3 cut(s) | 224, 543, 751 |
| Csp6I | GTAC | 3 cut(s) | 230, 297, 860 |
| CviAII | CATG | 4 cut(s) | 196, 644, 772, 924 |
| CviQI | GTAC | 3 cut(s) | 230, 297, 860 |
| DdeI | CTNAG | 2 cut(s) | 450, 513 |
| DinI | GGCGCC | 1 cut(s) | 696 |
| DpnI | GATC | 8 cut(s) | 68, 350, 703, 792, 834, 938, 950, 956 |
| DpnII | GATC | 8 cut(s) | 66, 348, 701, 790, 832, 936, 948, 954 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 540 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 540 |
| EaeI | YGGCCR | 1 cut(s) | 322 |
| Eam1104I | CTCTTC | 1 cut(s) | 297 |
| EarI | CTCTTC | 1 cut(s) | 297 |
| EciI | GGCGGA | 1 cut(s) | 645 |
| Eco130I | CCWWGG | 2 cut(s) | 486, 643 |
| Eco31I | GGTCTC | 1 cut(s) | 430 |
| Eco47I | GGWCC | 1 cut(s) | 542 |
| EcoT14I | CCWWGG | 2 cut(s) | 486, 643 |
| EgeI | GGCGCC | 1 cut(s) | 696 |
| EheI | GGCGCC | 1 cut(s) | 696 |
| ErhI | CCWWGG | 2 cut(s) | 486, 643 |
| Esp3I | CGTCTC | 1 cut(s) | 382 |
| FaeI | CATG | 4 cut(s) | 199, 647, 775, 927 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 8, 40 |
| FaqI | GGGAC | 1 cut(s) | 536 |
| FatI | CATG | 4 cut(s) | 195, 643, 771, 923 |
| FokI | GGATG | 3 cut(s) | 101, 749, 852 |
| FspBI | CTAG | 3 cut(s) | 35, 107, 126 |
| GlaI | GCGC | 5 cut(s) | 49, 219, 481, 685, 696 |
| HaeII | RGCGCY | 1 cut(s) | 698 |
| HaeIII | GGCC | 1 cut(s) | 324 |
| HapII | CCGG | 1 cut(s) | 461 |
| HgaI | GACGC | 3 cut(s) | 224, 543, 751 |
| HhaI | GCGC | 5 cut(s) | 50, 220, 482, 686, 697 |
| Hin1I | GRCGYC | 2 cut(s) | 695, 743 |
| Hin1II | CATG | 4 cut(s) | 199, 647, 775, 927 |
| Hin6I | GCGC | 5 cut(s) | 48, 218, 480, 684, 695 |
| HinP1I | GCGC | 5 cut(s) | 48, 218, 480, 684, 695 |
| HincII | GTYRAC | 2 cut(s) | 42, 608 |
| HindII | GTYRAC | 2 cut(s) | 42, 608 |
| HinfI | GANTC | 5 cut(s) | 38, 54, 358, 464, 495 |
| HpaII | CCGG | 1 cut(s) | 461 |
| HphI | GGTGA | 1 cut(s) | 751 |
| Hpy166II | GTNNAC | 4 cut(s) | 42, 590, 608, 841 |
| Hpy188I | TCNGA | 6 cut(s) | 71, 132, 286, 309, 408, 640 |
| Hpy188III | TCNNGA | 8 cut(s) | 107, 196, 352, 433, 461, 788, 940, 952 |
| Hpy8I | GTNNAC | 4 cut(s) | 42, 590, 608, 841 |
| HpyAV | CCTTC | 2 cut(s) | 379, 560 |
| HpyCH4III | ACNGT | 1 cut(s) | 599 |
| HpyCH4IV | ACGT | 4 cut(s) | 135, 427, 610, 875 |
| HpyCH4V | TGCA | 4 cut(s) | 383, 590, 775, 880 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 167, 176, 692, 781, 913 |
| HpyF3I | CTNAG | 2 cut(s) | 450, 513 |
| HpySE526I | ACGT | 4 cut(s) | 135, 427, 610, 875 |
| Hsp92I | GRCGYC | 2 cut(s) | 695, 743 |
| Hsp92II | CATG | 4 cut(s) | 199, 647, 775, 927 |
| HspAI | GCGC | 5 cut(s) | 48, 218, 480, 684, 695 |
| KasI | GGCGCC | 1 cut(s) | 694 |
| Kpn2I | TCCGGA | 1 cut(s) | 460 |
| Kzo9I | GATC | 8 cut(s) | 66, 348, 701, 790, 832, 936, 948, 954 |
| LguI | GCTCTTC | 1 cut(s) | 297 |
| LmnI | GCTCC | 5 cut(s) | 225, 502, 632, 709, 798 |
| LpnPI | CCDG | 6 cut(s) | 23, 30, 36, 408, 474, 726 |
| LweI | GCATC | 1 cut(s) | 793 |
| MaeI | CTAG | 3 cut(s) | 35, 107, 126 |
| MaeII | ACGT | 4 cut(s) | 135, 427, 610, 875 |
| MaeIII | GTNAC | 3 cut(s) | 5, 650, 739 |
| MalI | GATC | 8 cut(s) | 68, 350, 703, 792, 834, 938, 950, 956 |
| MboI | GATC | 8 cut(s) | 66, 348, 701, 790, 832, 936, 948, 954 |
| MboII | GAAGA | 4 cut(s) | 284, 367, 814, 946 |
| MflI | RGATCY | 2 cut(s) | 66, 948 |
| MhlI | GDGCHC | 2 cut(s) | 141, 592 |
| MlsI | TGGCCA | 1 cut(s) | 324 |
| MluCI | AATT | 3 cut(s) | 400, 526, 918 |
| MluNI | TGGCCA | 1 cut(s) | 324 |
| Mly113I | GGCGCC | 1 cut(s) | 695 |
| MlyI | GAGTC | 4 cut(s) | 47, 352, 473, 489 |
| MmeI | TCCRAC | 2 cut(s) | 663, 790 |
| Mox20I | TGGCCA | 1 cut(s) | 324 |
| MroI | TCCGGA | 1 cut(s) | 460 |
| MroXI | GAANNNNTTC | 1 cut(s) | 291 |
| MscI | TGGCCA | 1 cut(s) | 324 |
| MseI | TTAA | 2 cut(s) | 90, 417 |
| MslI | CAYNNNNRTG | 3 cut(s) | 194, 723, 812 |
| Msp20I | TGGCCA | 1 cut(s) | 324 |
| MspCI | CTTAAG | 1 cut(s) | 89 |
| MspI | CCGG | 1 cut(s) | 461 |
| MvnI | CGCG | 2 cut(s) | 218, 684 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 167, 176, 692, 781, 913 |
| NarI | GGCGCC | 1 cut(s) | 695 |
| NcoI | CCATGG | 1 cut(s) | 643 |
| NdeII | GATC | 8 cut(s) | 66, 348, 701, 790, 832, 936, 948, 954 |
| NlaIII | CATG | 4 cut(s) | 199, 647, 775, 927 |
| NlaIV | GGNNCC | 5 cut(s) | 68, 596, 634, 696, 711 |
| NmuCI | GTSAC | 1 cut(s) | 739 |
| PagI | TCATGA | 1 cut(s) | 195 |
| PciSI | GCTCTTC | 1 cut(s) | 297 |
| PdmI | GAANNNNTTC | 1 cut(s) | 291 |
| PfeI | GAWTC | 1 cut(s) | 54 |
| PleI | GAGTC | 4 cut(s) | 46, 352, 472, 489 |
| PluTI | GGCGCC | 1 cut(s) | 698 |
| PpsI | GAGTC | 4 cut(s) | 46, 352, 472, 489 |
| PsiI | TTATAA | 1 cut(s) | 279 |
| Psp1406I | AACGTT | 1 cut(s) | 875 |
| PspN4I | GGNNCC | 5 cut(s) | 68, 596, 634, 696, 711 |
| PspPI | GGNCC | 1 cut(s) | 542 |
| PsuI | RGATCY | 2 cut(s) | 66, 948 |
| RsaI | GTAC | 3 cut(s) | 231, 298, 861 |
| RsaNI | GTAC | 3 cut(s) | 230, 297, 860 |
| RseI | CAYNNNNRTG | 3 cut(s) | 194, 723, 812 |
| SapI | GCTCTTC | 1 cut(s) | 297 |
| SaqAI | TTAA | 2 cut(s) | 90, 417 |
| Sau3AI | GATC | 8 cut(s) | 66, 348, 701, 790, 832, 936, 948, 954 |
| Sau96I | GGNCC | 1 cut(s) | 542 |
| SchI | GAGTC | 4 cut(s) | 47, 352, 473, 489 |
| SduI | GDGCHC | 2 cut(s) | 141, 592 |
| SfaNI | GCATC | 1 cut(s) | 793 |
| SfcI | CTRYAG | 1 cut(s) | 472 |
| SfoI | GGCGCC | 1 cut(s) | 696 |
| SinI | GGWCC | 1 cut(s) | 542 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 194, 723, 812 |
| SmlI | CTYRAG | 2 cut(s) | 89, 497 |
| SmoI | CTYRAG | 2 cut(s) | 89, 497 |
| Sse9I | AATT | 3 cut(s) | 400, 526, 918 |
| SsiI | CCGC | 4 cut(s) | 247, 630, 682, 737 |
| SspDI | GGCGCC | 1 cut(s) | 694 |
| SspMI | CTAG | 3 cut(s) | 35, 107, 126 |
| StyI | CCWWGG | 2 cut(s) | 486, 643 |
| TaaI | ACNGT | 1 cut(s) | 599 |
| TaiI | ACGT | 4 cut(s) | 138, 430, 613, 878 |
| TaqI | TCGA | 5 cut(s) | 351, 700, 789, 825, 953 |
| TasI | AATT | 3 cut(s) | 400, 526, 918 |
| TatI | WGTACW | 1 cut(s) | 859 |
| TfiI | GAWTC | 1 cut(s) | 54 |
| Tru1I | TTAA | 2 cut(s) | 90, 417 |
| Tru9I | TTAA | 2 cut(s) | 90, 417 |
| TscAI | CASTG | 1 cut(s) | 390 |
| TseFI | GTSAC | 1 cut(s) | 739 |
| Tsp45I | GTSAC | 1 cut(s) | 739 |
| TspGWI | ACGGA | 2 cut(s) | 256, 607 |
| TspRI | CASTG | 1 cut(s) | 390 |
| Vha464I | CTTAAG | 1 cut(s) | 89 |
| VneI | GTGCAC | 1 cut(s) | 588 |
| VpaK11BI | GGWCC | 1 cut(s) | 542 |
| XbaI | TCTAGA | 1 cut(s) | 106 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 307 |
| XmnI | GAANNNNTTC | 1 cut(s) | 291 |
| XspI | CTAG | 3 cut(s) | 35, 107, 126 |