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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 214 |
| AccB1I | GGYRCC | 1 cut(s) | 67 |
| AccBSI | CCGCTC | 1 cut(s) | 724 |
| AccII | CGCG | 1 cut(s) | 252 |
| AciI | CCGC | 6 cut(s) | 71, 105, 129, 156, 724, 732 |
| AclWI | GGATC | 3 cut(s) | 257, 270, 706 |
| AcoI | YGGCCR | 3 cut(s) | 403, 514, 682 |
| AcsI | RAATTY | 6 cut(s) | 189, 296, 409, 520, 575, 688 |
| AcyI | GRCGYC | 1 cut(s) | 68 |
| AfaI | GTAC | 2 cut(s) | 111, 121 |
| AflIII | ACRYGT | 1 cut(s) | 223 |
| AgsI | TTSAA | 7 cut(s) | 248, 316, 415, 526, 595, 694, 739 |
| AluBI | AGCT | 4 cut(s) | 43, 61, 85, 117 |
| AluI | AGCT | 4 cut(s) | 43, 61, 85, 117 |
| Alw26I | GTCTC | 3 cut(s) | 382, 493, 661 |
| AlwI | GGATC | 3 cut(s) | 257, 270, 706 |
| AoxI | GGCC | 3 cut(s) | 403, 514, 682 |
| ApeKI | GCWGC | 1 cut(s) | 114 |
| ApoI | RAATTY | 6 cut(s) | 189, 296, 409, 520, 575, 688 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 186, 218 |
| AspLEI | GCGC | 2 cut(s) | 70, 254 |
| AsuC2I | CCSGG | 2 cut(s) | 48, 141 |
| AsuHPI | GGTGA | 3 cut(s) | 347, 458, 626 |
| AsuNHI | GCTAGC | 2 cut(s) | 85, 101 |
| BaeGI | GKGCMC | 1 cut(s) | 546 |
| BamHI | GGATCC | 1 cut(s) | 262 |
| BanI | GGYRCC | 1 cut(s) | 67 |
| BauI | CACGAG | 1 cut(s) | 123 |
| BbsI | GAAGAC | 2 cut(s) | 295, 574 |
| BbvI | GCAGC | 1 cut(s) | 126 |
| BceAI | ACGGC | 1 cut(s) | 81 |
| BcnI | CCSGG | 2 cut(s) | 48, 141 |
| BcoDI | GTCTC | 3 cut(s) | 382, 493, 661 |
| BfaI | CTAG | 3 cut(s) | 86, 102, 173 |
| BfoI | RGCGCY | 1 cut(s) | 71 |
| BisI | GCNGC | 2 cut(s) | 71, 115 |
| BlsI | GCNGC | 2 cut(s) | 72, 116 |
| Bme1390I | CCNGG | 2 cut(s) | 48, 141 |
| BmiI | GGNNCC | 2 cut(s) | 69, 264 |
| BmrFI | CCNGG | 2 cut(s) | 48, 141 |
| BmrI | ACTGGG | 3 cut(s) | 364, 475, 643 |
| BmsI | GCATC | 1 cut(s) | 98 |
| BmtI | GCTAGC | 2 cut(s) | 89, 105 |
| BmuI | ACTGGG | 3 cut(s) | 364, 475, 643 |
| BpiI | GAAGAC | 2 cut(s) | 295, 574 |
| BpuMI | CCSGG | 2 cut(s) | 48, 141 |
| BsaHI | GRCGYC | 1 cut(s) | 68 |
| BsaI | GGTCTC | 3 cut(s) | 382, 493, 661 |
| BsaJI | CCNNGG | 4 cut(s) | 74, 140, 307, 586 |
| Bse1I | ACTGG | 3 cut(s) | 370, 481, 649 |
| BseDI | CCNNGG | 4 cut(s) | 74, 140, 307, 586 |
| BseNI | ACTGG | 3 cut(s) | 370, 481, 649 |
| BseSI | GKGCMC | 1 cut(s) | 546 |
| BseXI | GCAGC | 1 cut(s) | 126 |
| Bsh1236I | CGCG | 1 cut(s) | 252 |
| BshFI | GGCC | 3 cut(s) | 405, 516, 684 |
| BshNI | GGYRCC | 1 cut(s) | 67 |
| BsiSI | CCGG | 8 cut(s) | 48, 140, 396, 406, 507, 517, 675, 685 |
| BsmAI | GTCTC | 3 cut(s) | 382, 493, 661 |
| BsnI | GGCC | 3 cut(s) | 405, 516, 684 |
| Bso31I | GGTCTC | 3 cut(s) | 382, 493, 661 |
| Bsp1286I | GDGCHC | 1 cut(s) | 546 |
| Bsp1407I | TGTACA | 1 cut(s) | 119 |
| Bsp143I | GATC | 2 cut(s) | 262, 711 |
| BspACI | CCGC | 6 cut(s) | 71, 105, 129, 156, 724, 732 |
| BspANI | GGCC | 3 cut(s) | 405, 516, 684 |
| BspFNI | CGCG | 1 cut(s) | 252 |
| BspLI | GGNNCC | 2 cut(s) | 69, 264 |
| BspOI | GCTAGC | 2 cut(s) | 89, 105 |
| BspPI | GGATC | 3 cut(s) | 257, 270, 706 |
| BspT107I | GGYRCC | 1 cut(s) | 67 |
| BspTNI | GGTCTC | 3 cut(s) | 382, 493, 661 |
| BsrBI | CCGCTC | 1 cut(s) | 724 |
| BsrGI | TGTACA | 1 cut(s) | 119 |
| BsrI | ACTGG | 3 cut(s) | 370, 481, 649 |
| BssECI | CCNNGG | 4 cut(s) | 74, 140, 307, 586 |
| BssMI | GATC | 2 cut(s) | 262, 711 |
| BssNI | GRCGYC | 1 cut(s) | 68 |
| BssSI | CACGAG | 1 cut(s) | 123 |
| Bst2BI | CACGAG | 1 cut(s) | 123 |
| BstACI | GRCGYC | 1 cut(s) | 68 |
| BstAUI | TGTACA | 1 cut(s) | 119 |
| BstC8I | GCNNGC | 2 cut(s) | 87, 103 |
| BstFNI | CGCG | 1 cut(s) | 252 |
| BstH2I | RGCGCY | 1 cut(s) | 71 |
| BstHHI | GCGC | 2 cut(s) | 70, 254 |
| BstKTI | GATC | 2 cut(s) | 265, 714 |
| BstMAI | GTCTC | 3 cut(s) | 382, 493, 661 |
| BstMBI | GATC | 2 cut(s) | 262, 711 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 67, 111, 365, 476, 644 |
| BstNSI | RCATGY | 1 cut(s) | 227 |
| BstSCI | CCNGG | 2 cut(s) | 46, 139 |
| BstSLI | GKGCMC | 1 cut(s) | 546 |
| BstUI | CGCG | 1 cut(s) | 252 |
| BstV1I | GCAGC | 1 cut(s) | 126 |
| BstV2I | GAAGAC | 2 cut(s) | 295, 574 |
| BstX2I | RGATCY | 1 cut(s) | 262 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 226 |
| BstYI | RGATCY | 1 cut(s) | 262 |
| BsuRI | GGCC | 3 cut(s) | 405, 516, 684 |
| Cac8I | GCNNGC | 2 cut(s) | 87, 103 |
| CfoI | GCGC | 2 cut(s) | 70, 254 |
| Csp6I | GTAC | 2 cut(s) | 110, 120 |
| CviAII | CATG | 4 cut(s) | 224, 350, 461, 629 |
| CviQI | GTAC | 2 cut(s) | 110, 120 |
| DinI | GGCGCC | 1 cut(s) | 69 |
| DpnI | GATC | 2 cut(s) | 264, 713 |
| DpnII | GATC | 2 cut(s) | 262, 711 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 214 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 214 |
| EaeI | YGGCCR | 3 cut(s) | 403, 514, 682 |
| Eco31I | GGTCTC | 3 cut(s) | 382, 493, 661 |
| EgeI | GGCGCC | 1 cut(s) | 69 |
| EheI | GGCGCC | 1 cut(s) | 69 |
| FaeI | CATG | 4 cut(s) | 227, 353, 464, 632 |
| FaiI | YATR | 6 cut(s) | 185, 225, 257, 351, 462, 630 |
| FatI | CATG | 4 cut(s) | 223, 349, 460, 628 |
| FauI | CCCGC | 1 cut(s) | 98 |
| Fnu4HI | GCNGC | 2 cut(s) | 71, 115 |
| Fsp4HI | GCNGC | 2 cut(s) | 71, 115 |
| FspBI | CTAG | 3 cut(s) | 86, 102, 173 |
| GlaI | GCGC | 2 cut(s) | 69, 253 |
| GluI | GCNGC | 2 cut(s) | 71, 115 |
| HaeII | RGCGCY | 1 cut(s) | 71 |
| HaeIII | GGCC | 3 cut(s) | 405, 516, 684 |
| HapII | CCGG | 8 cut(s) | 48, 140, 396, 406, 507, 517, 675, 685 |
| HhaI | GCGC | 2 cut(s) | 70, 254 |
| Hin1I | GRCGYC | 1 cut(s) | 68 |
| Hin1II | CATG | 4 cut(s) | 227, 353, 464, 632 |
| Hin6I | GCGC | 2 cut(s) | 68, 252 |
| HinP1I | GCGC | 2 cut(s) | 68, 252 |
| HindIII | AAGCTT | 1 cut(s) | 41 |
| HinfI | GANTC | 2 cut(s) | 316, 595 |
| HpaII | CCGG | 8 cut(s) | 48, 140, 396, 406, 507, 517, 675, 685 |
| HphI | GGTGA | 3 cut(s) | 347, 458, 626 |
| Hpy166II | GTNNAC | 2 cut(s) | 122, 752 |
| Hpy188I | TCNGA | 4 cut(s) | 294, 426, 573, 721 |
| Hpy188III | TCNNGA | 3 cut(s) | 173, 320, 599 |
| Hpy8I | GTNNAC | 2 cut(s) | 122, 752 |
| HpyCH4V | TGCA | 1 cut(s) | 187 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 67, 111, 365, 476, 644 |
| Hsp92I | GRCGYC | 1 cut(s) | 68 |
| Hsp92II | CATG | 4 cut(s) | 227, 353, 464, 632 |
| HspAI | GCGC | 2 cut(s) | 68, 252 |
| KasI | GGCGCC | 1 cut(s) | 67 |
| Kzo9I | GATC | 2 cut(s) | 262, 711 |
| Lsp1109I | GCAGC | 1 cut(s) | 126 |
| LweI | GCATC | 1 cut(s) | 98 |
| MaeI | CTAG | 3 cut(s) | 86, 102, 173 |
| MaeIII | GTNAC | 1 cut(s) | 3 |
| MalI | GATC | 2 cut(s) | 264, 713 |
| MbiI | CCGCTC | 1 cut(s) | 724 |
| MboI | GATC | 2 cut(s) | 262, 711 |
| MboII | GAAGA | 5 cut(s) | 295, 427, 538, 574, 706 |
| MflI | RGATCY | 1 cut(s) | 262 |
| MhlI | GDGCHC | 1 cut(s) | 546 |
| MluCI | AATT | 7 cut(s) | 189, 296, 409, 520, 575, 688, 740 |
| Mly113I | GGCGCC | 1 cut(s) | 68 |
| MseI | TTAA | 1 cut(s) | 39 |
| MspA1I | CMGCKG | 2 cut(s) | 117, 158 |
| MspI | CCGG | 8 cut(s) | 48, 140, 396, 406, 507, 517, 675, 685 |
| MspR9I | CCNGG | 2 cut(s) | 48, 141 |
| MvnI | CGCG | 1 cut(s) | 252 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 67, 111, 365, 476, 644 |
| NarI | GGCGCC | 1 cut(s) | 68 |
| NciI | CCSGG | 2 cut(s) | 48, 141 |
| NdeII | GATC | 2 cut(s) | 262, 711 |
| NheI | GCTAGC | 2 cut(s) | 85, 101 |
| NlaIII | CATG | 4 cut(s) | 227, 353, 464, 632 |
| NlaIV | GGNNCC | 2 cut(s) | 69, 264 |
| NmeAIII | GCCGAG | 1 cut(s) | 99 |
| NmuCI | GTSAC | 1 cut(s) | 3 |
| NspI | RCATGY | 1 cut(s) | 227 |
| PciI | ACATGT | 1 cut(s) | 223 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 71 |
| PfeI | GAWTC | 2 cut(s) | 316, 595 |
| PfoI | TCCNGGA | 1 cut(s) | 46 |
| PkrI | GCNGC | 2 cut(s) | 72, 116 |
| PluTI | GGCGCC | 1 cut(s) | 71 |
| PscI | ACATGT | 1 cut(s) | 223 |
| PspN4I | GGNNCC | 2 cut(s) | 69, 264 |
| PsuI | RGATCY | 1 cut(s) | 262 |
| PvuII | CAGCTG | 1 cut(s) | 117 |
| RsaI | GTAC | 2 cut(s) | 111, 121 |
| RsaNI | GTAC | 2 cut(s) | 110, 120 |
| SaqAI | TTAA | 1 cut(s) | 39 |
| SatI | GCNGC | 2 cut(s) | 71, 115 |
| Sau3AI | GATC | 2 cut(s) | 262, 711 |
| ScrFI | CCNGG | 2 cut(s) | 48, 141 |
| SduI | GDGCHC | 1 cut(s) | 546 |
| SetI | ASST | 6 cut(s) | 45, 63, 87, 119, 172, 199 |
| SfaNI | GCATC | 1 cut(s) | 98 |
| SfoI | GGCGCC | 1 cut(s) | 69 |
| Sse9I | AATT | 7 cut(s) | 189, 296, 409, 520, 575, 688, 740 |
| SsiI | CCGC | 6 cut(s) | 71, 105, 129, 156, 724, 732 |
| SspDI | GGCGCC | 1 cut(s) | 67 |
| SspMI | CTAG | 3 cut(s) | 86, 102, 173 |
| StyD4I | CCNGG | 2 cut(s) | 46, 139 |
| TaqI | TCGA | 5 cut(s) | 193, 319, 535, 598, 703 |
| TasI | AATT | 7 cut(s) | 189, 296, 409, 520, 575, 688, 740 |
| TatI | WGTACW | 1 cut(s) | 119 |
| TauI | GCSGC | 1 cut(s) | 73 |
| TfiI | GAWTC | 2 cut(s) | 316, 595 |
| Tru1I | TTAA | 1 cut(s) | 39 |
| Tru9I | TTAA | 1 cut(s) | 39 |
| TseFI | GTSAC | 1 cut(s) | 3 |
| TseI | GCWGC | 1 cut(s) | 114 |
| Tsp45I | GTSAC | 1 cut(s) | 3 |
| XapI | RAATTY | 6 cut(s) | 189, 296, 409, 520, 575, 688 |
| XbaI | TCTAGA | 1 cut(s) | 172 |
| XceI | RCATGY | 1 cut(s) | 227 |
| XspI | CTAG | 3 cut(s) | 86, 102, 173 |