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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 163 |
| AccB1I | GGYRCC | 1 cut(s) | 554 |
| AccIII | TCCGGA | 1 cut(s) | 454 |
| AciI | CCGC | 3 cut(s) | 475, 487, 695 |
| AclWI | GGATC | 1 cut(s) | 356 |
| AcoI | YGGCCR | 1 cut(s) | 541 |
| AcyI | GRCGYC | 1 cut(s) | 555 |
| AfaI | GTAC | 2 cut(s) | 143, 620 |
| AgsI | TTSAA | 1 cut(s) | 592 |
| AjiI | CACGTC | 1 cut(s) | 25 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 177, 209 |
| AluBI | AGCT | 4 cut(s) | 44, 50, 367, 377 |
| AluI | AGCT | 4 cut(s) | 44, 50, 367, 377 |
| Alw21I | GWGCWC | 1 cut(s) | 369 |
| Alw26I | GTCTC | 4 cut(s) | 181, 301, 424, 452 |
| AlwI | GGATC | 1 cut(s) | 356 |
| Aor13HI | TCCGGA | 1 cut(s) | 454 |
| AoxI | GGCC | 1 cut(s) | 541 |
| ApeKI | GCWGC | 1 cut(s) | 169 |
| AspLEI | GCGC | 1 cut(s) | 557 |
| AsuHPI | GGTGA | 1 cut(s) | 684 |
| BaeGI | GKGCMC | 1 cut(s) | 663 |
| BalI | TGGCCA | 1 cut(s) | 543 |
| BanI | GGYRCC | 1 cut(s) | 554 |
| BanII | GRGCYC | 1 cut(s) | 369 |
| BauI | CACGAG | 2 cut(s) | 434, 677 |
| BbsI | GAAGAC | 2 cut(s) | 162, 281 |
| Bbv12I | GWGCWC | 1 cut(s) | 369 |
| BbvI | GCAGC | 1 cut(s) | 156 |
| BccI | CCATC | 4 cut(s) | 104, 231, 301, 339 |
| BceAI | ACGGC | 1 cut(s) | 558 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 320, 354 |
| BcoDI | GTCTC | 4 cut(s) | 181, 301, 424, 452 |
| BfaI | CTAG | 2 cut(s) | 162, 227 |
| BfmI | CTRYAG | 1 cut(s) | 170 |
| BfoI | RGCGCY | 1 cut(s) | 558 |
| BfuAI | ACCTGC | 1 cut(s) | 163 |
| BisI | GCNGC | 1 cut(s) | 170 |
| BlsI | GCNGC | 1 cut(s) | 171 |
| BmgBI | CACGTC | 1 cut(s) | 25 |
| BmiI | GGNNCC | 2 cut(s) | 248, 556 |
| BpiI | GAAGAC | 2 cut(s) | 162, 281 |
| BpuEI | CTTGAG | 2 cut(s) | 29, 30 |
| Bsa29I | ATCGAT | 1 cut(s) | 330 |
| BsaHI | GRCGYC | 1 cut(s) | 555 |
| BsaI | GGTCTC | 2 cut(s) | 181, 452 |
| BsaWI | WCCGGW | 1 cut(s) | 454 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 602, 632 |
| BseAI | TCCGGA | 1 cut(s) | 454 |
| BseCI | ATCGAT | 1 cut(s) | 330 |
| BseGI | GGATG | 2 cut(s) | 99, 405 |
| BseSI | GKGCMC | 1 cut(s) | 663 |
| BseXI | GCAGC | 1 cut(s) | 156 |
| BshFI | GGCC | 1 cut(s) | 543 |
| BshNI | GGYRCC | 1 cut(s) | 554 |
| BshVI | ATCGAT | 1 cut(s) | 330 |
| BsiHKAI | GWGCWC | 1 cut(s) | 369 |
| BsiSI | CCGG | 1 cut(s) | 455 |
| BsmAI | GTCTC | 4 cut(s) | 181, 301, 424, 452 |
| BsmBI | CGTCTC | 1 cut(s) | 301 |
| BsnI | GGCC | 1 cut(s) | 543 |
| Bso31I | GGTCTC | 2 cut(s) | 181, 452 |
| Bsp1286I | GDGCHC | 2 cut(s) | 369, 663 |
| Bsp13I | TCCGGA | 1 cut(s) | 454 |
| Bsp143I | GATC | 1 cut(s) | 348 |
| BspACI | CCGC | 3 cut(s) | 475, 487, 695 |
| BspANI | GGCC | 1 cut(s) | 543 |
| BspDI | ATCGAT | 1 cut(s) | 330 |
| BspEI | TCCGGA | 1 cut(s) | 454 |
| BspLI | GGNNCC | 2 cut(s) | 248, 556 |
| BspMAI | CTGCAG | 1 cut(s) | 174 |
| BspMI | ACCTGC | 1 cut(s) | 163 |
| BspPI | GGATC | 1 cut(s) | 356 |
| BspT107I | GGYRCC | 1 cut(s) | 554 |
| BspTNI | GGTCTC | 2 cut(s) | 181, 452 |
| BssMI | GATC | 1 cut(s) | 348 |
| BssNI | GRCGYC | 1 cut(s) | 555 |
| BssSI | CACGAG | 2 cut(s) | 434, 677 |
| Bst2BI | CACGAG | 2 cut(s) | 434, 677 |
| Bst6I | CTCTTC | 1 cut(s) | 496 |
| BstACI | GRCGYC | 1 cut(s) | 555 |
| BstC8I | GCNNGC | 1 cut(s) | 42 |
| BstDEI | CTNAG | 3 cut(s) | 315, 567, 615 |
| BstF5I | GGATG | 2 cut(s) | 99, 405 |
| BstH2I | RGCGCY | 1 cut(s) | 558 |
| BstHHI | GCGC | 1 cut(s) | 557 |
| BstKTI | GATC | 1 cut(s) | 351 |
| BstMAI | GTCTC | 4 cut(s) | 181, 301, 424, 452 |
| BstMBI | GATC | 1 cut(s) | 348 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 56, 65 |
| BstSFI | CTRYAG | 1 cut(s) | 170 |
| BstSLI | GKGCMC | 1 cut(s) | 663 |
| BstV1I | GCAGC | 1 cut(s) | 156 |
| BstV2I | GAAGAC | 2 cut(s) | 162, 281 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 551 |
| Bsu15I | ATCGAT | 1 cut(s) | 330 |
| BsuRI | GGCC | 1 cut(s) | 543 |
| BsuTUI | ATCGAT | 1 cut(s) | 330 |
| BtgZI | GCGATG | 1 cut(s) | 275 |
| BtrI | CACGTC | 1 cut(s) | 25 |
| BtsCI | GGATG | 2 cut(s) | 99, 405 |
| BveI | ACCTGC | 1 cut(s) | 163 |
| Cac8I | GCNNGC | 1 cut(s) | 42 |
| CfoI | GCGC | 1 cut(s) | 557 |
| ClaI | ATCGAT | 1 cut(s) | 330 |
| CseI | GACGC | 1 cut(s) | 593 |
| Csp6I | GTAC | 2 cut(s) | 142, 619 |
| CviAII | CATG | 4 cut(s) | 73, 145, 398, 545 |
| CviJI | RGCY | 9 cut(s) | 44, 50, 95, 169, 247, 367, 377, 543, 573 |
| CviKI_1 | RGCY | 9 cut(s) | 44, 50, 95, 169, 247, 367, 377, 543, 573 |
| CviQI | GTAC | 2 cut(s) | 142, 619 |
| DdeI | CTNAG | 3 cut(s) | 315, 567, 615 |
| DinI | GGCGCC | 1 cut(s) | 556 |
| DpnI | GATC | 1 cut(s) | 350 |
| DpnII | GATC | 1 cut(s) | 348 |
| EaeI | YGGCCR | 1 cut(s) | 541 |
| Eam1104I | CTCTTC | 1 cut(s) | 496 |
| EarI | CTCTTC | 1 cut(s) | 496 |
| EciI | GGCGGA | 1 cut(s) | 502 |
| Ecl136II | GAGCTC | 1 cut(s) | 367 |
| Eco24I | GRGCYC | 1 cut(s) | 369 |
| Eco31I | GGTCTC | 2 cut(s) | 181, 452 |
| Eco53kI | GAGCTC | 1 cut(s) | 367 |
| EcoICRI | GAGCTC | 1 cut(s) | 367 |
| EcoT38I | GRGCYC | 1 cut(s) | 369 |
| EgeI | GGCGCC | 1 cut(s) | 556 |
| EheI | GGCGCC | 1 cut(s) | 556 |
| Esp3I | CGTCTC | 1 cut(s) | 301 |
| FaeI | CATG | 4 cut(s) | 76, 148, 401, 548 |
| FatI | CATG | 4 cut(s) | 72, 144, 397, 544 |
| Fnu4HI | GCNGC | 1 cut(s) | 170 |
| FokI | GGATG | 2 cut(s) | 86, 392 |
| FriOI | GRGCYC | 1 cut(s) | 369 |
| Fsp4HI | GCNGC | 1 cut(s) | 170 |
| FspBI | CTAG | 2 cut(s) | 162, 227 |
| GlaI | GCGC | 1 cut(s) | 556 |
| GluI | GCNGC | 1 cut(s) | 170 |
| HaeII | RGCGCY | 1 cut(s) | 558 |
| HaeIII | GGCC | 1 cut(s) | 543 |
| HapII | CCGG | 1 cut(s) | 455 |
| HgaI | GACGC | 1 cut(s) | 593 |
| HhaI | GCGC | 1 cut(s) | 557 |
| Hin1I | GRCGYC | 1 cut(s) | 555 |
| Hin1II | CATG | 4 cut(s) | 76, 148, 401, 548 |
| Hin6I | GCGC | 1 cut(s) | 555 |
| HinP1I | GCGC | 1 cut(s) | 555 |
| HincII | GTYRAC | 1 cut(s) | 509 |
| HindII | GTYRAC | 1 cut(s) | 509 |
| HindIII | AAGCTT | 1 cut(s) | 48 |
| HinfI | GANTC | 9 cut(s) | 4, 109, 125, 209, 277, 327, 432, 496, 611 |
| HpaII | CCGG | 1 cut(s) | 455 |
| HphI | GGTGA | 1 cut(s) | 684 |
| Hpy166II | GTNNAC | 1 cut(s) | 509 |
| Hpy188III | TCNNGA | 7 cut(s) | 8, 20, 221, 429, 455, 636, 679 |
| Hpy8I | GTNNAC | 1 cut(s) | 509 |
| HpyAV | CCTTC | 2 cut(s) | 159, 298 |
| HpyCH4IV | ACGT | 3 cut(s) | 24, 201, 511 |
| HpyCH4V | TGCA | 2 cut(s) | 172, 341 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 56, 65 |
| HpyF3I | CTNAG | 3 cut(s) | 315, 567, 615 |
| HpySE526I | ACGT | 3 cut(s) | 24, 201, 511 |
| Hsp92I | GRCGYC | 1 cut(s) | 555 |
| Hsp92II | CATG | 4 cut(s) | 76, 148, 401, 548 |
| HspAI | GCGC | 1 cut(s) | 555 |
| KasI | GGCGCC | 1 cut(s) | 554 |
| Kpn2I | TCCGGA | 1 cut(s) | 454 |
| Kzo9I | GATC | 1 cut(s) | 348 |
| LmnI | GCTCC | 3 cut(s) | 135, 252, 374 |
| LpnPI | CCDG | 6 cut(s) | 5, 158, 234, 468, 525, 636 |
| Lsp1109I | GCAGC | 1 cut(s) | 156 |
| MaeI | CTAG | 2 cut(s) | 162, 227 |
| MaeII | ACGT | 3 cut(s) | 24, 201, 511 |
| MaeIII | GTNAC | 4 cut(s) | 206, 334, 470, 690 |
| MalI | GATC | 1 cut(s) | 350 |
| MboI | GATC | 1 cut(s) | 348 |
| MboII | GAAGA | 6 cut(s) | 164, 167, 197, 286, 513, 694 |
| MhlI | GDGCHC | 2 cut(s) | 369, 663 |
| MlsI | TGGCCA | 1 cut(s) | 543 |
| MluCI | AATT | 3 cut(s) | 30, 424, 463 |
| MluNI | TGGCCA | 1 cut(s) | 543 |
| Mly113I | GGCGCC | 1 cut(s) | 555 |
| MlyI | GAGTC | 5 cut(s) | 103, 203, 271, 426, 620 |
| MnlI | CCTC | 6 cut(s) | 70, 497, 517, 521, 547, 609 |
| Mox20I | TGGCCA | 1 cut(s) | 543 |
| MroI | TCCGGA | 1 cut(s) | 454 |
| MscI | TGGCCA | 1 cut(s) | 543 |
| MslI | CAYNNNNRTG | 4 cut(s) | 104, 120, 255, 549 |
| Msp20I | TGGCCA | 1 cut(s) | 543 |
| MspI | CCGG | 1 cut(s) | 455 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 56, 65 |
| NarI | GGCGCC | 1 cut(s) | 555 |
| NdeII | GATC | 1 cut(s) | 348 |
| NlaIII | CATG | 4 cut(s) | 76, 148, 401, 548 |
| NlaIV | GGNNCC | 2 cut(s) | 248, 556 |
| NmuCI | GTSAC | 2 cut(s) | 206, 690 |
| PfeI | GAWTC | 4 cut(s) | 4, 125, 327, 496 |
| PkrI | GCNGC | 1 cut(s) | 171 |
| PleI | GAGTC | 5 cut(s) | 103, 203, 271, 426, 619 |
| PluTI | GGCGCC | 1 cut(s) | 558 |
| PpsI | GAGTC | 5 cut(s) | 103, 203, 271, 426, 619 |
| Psp124BI | GAGCTC | 1 cut(s) | 369 |
| PspN4I | GGNNCC | 2 cut(s) | 248, 556 |
| PstI | CTGCAG | 1 cut(s) | 174 |
| RsaI | GTAC | 2 cut(s) | 143, 620 |
| RsaNI | GTAC | 2 cut(s) | 142, 619 |
| RseI | CAYNNNNRTG | 4 cut(s) | 104, 120, 255, 549 |
| SacI | GAGCTC | 1 cut(s) | 369 |
| SatI | GCNGC | 1 cut(s) | 170 |
| Sau3AI | GATC | 1 cut(s) | 348 |
| SchI | GAGTC | 5 cut(s) | 103, 203, 271, 426, 620 |
| SduI | GDGCHC | 2 cut(s) | 369, 663 |
| SfcI | CTRYAG | 1 cut(s) | 170 |
| SfoI | GGCGCC | 1 cut(s) | 556 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 104, 120, 255, 549 |
| SmlI | CTYRAG | 2 cut(s) | 8, 45 |
| SmoI | CTYRAG | 2 cut(s) | 8, 45 |
| Sse9I | AATT | 3 cut(s) | 30, 424, 463 |
| SsiI | CCGC | 3 cut(s) | 475, 487, 695 |
| SspDI | GGCGCC | 1 cut(s) | 554 |
| SspMI | CTAG | 2 cut(s) | 162, 227 |
| SstI | GAGCTC | 1 cut(s) | 369 |
| TaiI | ACGT | 3 cut(s) | 27, 204, 514 |
| TaqI | TCGA | 6 cut(s) | 183, 325, 330, 428, 499, 637 |
| TasI | AATT | 3 cut(s) | 30, 424, 463 |
| TatI | WGTACW | 2 cut(s) | 141, 618 |
| TfiI | GAWTC | 4 cut(s) | 4, 125, 327, 496 |
| TseFI | GTSAC | 2 cut(s) | 206, 690 |
| TseI | GCWGC | 1 cut(s) | 169 |
| Tsp45I | GTSAC | 2 cut(s) | 206, 690 |
| TspDTI | ATGAA | 3 cut(s) | 161, 165, 395 |
| TspGWI | ACGGA | 1 cut(s) | 194 |
| XspI | CTAG | 2 cut(s) | 162, 227 |