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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 532 |
| AccII | CGCG | 2 cut(s) | 189, 348 |
| AciI | CCGC | 6 cut(s) | 71, 161, 189, 230, 626, 629 |
| AclWI | GGATC | 7 cut(s) | 171, 185, 192, 222, 229, 348, 369 |
| AcoI | YGGCCR | 2 cut(s) | 3, 227 |
| AcuI | CTGAAG | 1 cut(s) | 140 |
| AcyI | GRCGYC | 1 cut(s) | 529 |
| AdeI | CACNNNGTG | 1 cut(s) | 65 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 80, 239, 519 |
| AgeI | ACCGGT | 1 cut(s) | 196 |
| AjnI | CCWGG | 1 cut(s) | 397 |
| AluBI | AGCT | 3 cut(s) | 129, 145, 306 |
| AluI | AGCT | 3 cut(s) | 129, 145, 306 |
| Alw21I | GWGCWC | 3 cut(s) | 70, 131, 308 |
| Alw26I | GTCTC | 1 cut(s) | 648 |
| AlwI | GGATC | 7 cut(s) | 171, 185, 192, 222, 229, 348, 369 |
| AoxI | GGCC | 6 cut(s) | 3, 105, 227, 299, 677, 686 |
| ApeKI | GCWGC | 4 cut(s) | 418, 427, 477, 584 |
| AsiGI | ACCGGT | 1 cut(s) | 196 |
| AspLEI | GCGC | 1 cut(s) | 348 |
| AspS9I | GGNCC | 3 cut(s) | 105, 677, 686 |
| AsuHPI | GGTGA | 1 cut(s) | 550 |
| AsuNHI | GCTAGC | 1 cut(s) | 11 |
| BalI | TGGCCA | 1 cut(s) | 5 |
| BanII | GRGCYC | 3 cut(s) | 131, 308, 722 |
| BbsI | GAAGAC | 1 cut(s) | 431 |
| Bbv12I | GWGCWC | 3 cut(s) | 70, 131, 308 |
| BbvI | GCAGC | 4 cut(s) | 430, 439, 464, 596 |
| BccI | CCATC | 5 cut(s) | 73, 260, 400, 595, 663 |
| BceAI | ACGGC | 2 cut(s) | 242, 622 |
| BciT130I | CCWGG | 1 cut(s) | 399 |
| BcoDI | GTCTC | 1 cut(s) | 648 |
| BfaI | CTAG | 1 cut(s) | 12 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 685 |
| BisI | GCNGC | 7 cut(s) | 230, 419, 428, 478, 585, 627, 630 |
| BlsI | GCNGC | 7 cut(s) | 231, 420, 429, 479, 586, 628, 631 |
| Bme1390I | CCNGG | 1 cut(s) | 399 |
| BmgT120I | GGNCC | 3 cut(s) | 105, 677, 686 |
| BmiI | GGNNCC | 2 cut(s) | 245, 396 |
| BmrFI | CCNGG | 1 cut(s) | 399 |
| BmrI | ACTGGG | 3 cut(s) | 361, 555, 684 |
| BmsI | GCATC | 1 cut(s) | 213 |
| BmtI | GCTAGC | 1 cut(s) | 15 |
| BmuI | ACTGGG | 3 cut(s) | 361, 555, 684 |
| BpiI | GAAGAC | 1 cut(s) | 431 |
| BpmI | CTGGAG | 1 cut(s) | 420 |
| BsaHI | GRCGYC | 1 cut(s) | 529 |
| BsaJI | CCNNGG | 7 cut(s) | 74, 108, 132, 233, 247, 513, 689 |
| BsaWI | WCCGGW | 1 cut(s) | 196 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 80, 239, 519 |
| Bse118I | RCCGGY | 1 cut(s) | 196 |
| Bse1I | ACTGG | 5 cut(s) | 356, 437, 487, 550, 679 |
| Bse3DI | GCAATG | 2 cut(s) | 6, 647 |
| BseBI | CCWGG | 1 cut(s) | 399 |
| BseDI | CCNNGG | 7 cut(s) | 74, 108, 132, 233, 247, 513, 689 |
| BseGI | GGATG | 5 cut(s) | 84, 90, 271, 610, 674 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 80, 239, 519 |
| BseMI | GCAATG | 2 cut(s) | 6, 647 |
| BseMII | CTCAG | 1 cut(s) | 287 |
| BseNI | ACTGG | 5 cut(s) | 356, 437, 487, 550, 679 |
| BseX3I | CGGCCG | 1 cut(s) | 227 |
| BseXI | GCAGC | 4 cut(s) | 430, 439, 464, 596 |
| BsgI | GTGCAG | 1 cut(s) | 463 |
| Bsh1236I | CGCG | 2 cut(s) | 189, 348 |
| Bsh1285I | CGRYCG | 1 cut(s) | 230 |
| BshFI | GGCC | 6 cut(s) | 5, 107, 229, 301, 679, 688 |
| BshTI | ACCGGT | 1 cut(s) | 196 |
| BsiEI | CGRYCG | 1 cut(s) | 230 |
| BsiHKAI | GWGCWC | 3 cut(s) | 70, 131, 308 |
| BsiSI | CCGG | 1 cut(s) | 197 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 80, 239, 519 |
| BsmAI | GTCTC | 1 cut(s) | 648 |
| BsnI | GGCC | 6 cut(s) | 5, 107, 229, 301, 679, 688 |
| Bsp1286I | GDGCHC | 4 cut(s) | 70, 131, 308, 722 |
| Bsp19I | CCATGG | 1 cut(s) | 108 |
| BspACI | CCGC | 6 cut(s) | 71, 161, 189, 230, 626, 629 |
| BspANI | GGCC | 6 cut(s) | 5, 107, 229, 301, 679, 688 |
| BspCNI | CTCAG | 1 cut(s) | 288 |
| BspFNI | CGCG | 2 cut(s) | 189, 348 |
| BspLI | GGNNCC | 2 cut(s) | 245, 396 |
| BspOI | GCTAGC | 1 cut(s) | 15 |
| BspPI | GGATC | 7 cut(s) | 171, 185, 192, 222, 229, 348, 369 |
| BsrDI | GCAATG | 2 cut(s) | 6, 647 |
| BsrFI | RCCGGY | 1 cut(s) | 196 |
| BsrI | ACTGG | 5 cut(s) | 356, 437, 487, 550, 679 |
| BssAI | RCCGGY | 1 cut(s) | 196 |
| BssECI | CCNNGG | 7 cut(s) | 74, 108, 132, 233, 247, 513, 689 |
| BssNI | GRCGYC | 1 cut(s) | 529 |
| BssT1I | CCWWGG | 7 cut(s) | 74, 108, 132, 233, 247, 513, 689 |
| Bst2UI | CCWGG | 1 cut(s) | 399 |
| Bst4CI | ACNGT | 4 cut(s) | 314, 386, 454, 665 |
| BstACI | GRCGYC | 1 cut(s) | 529 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 65 |
| BstC8I | GCNNGC | 2 cut(s) | 13, 510 |
| BstDEI | CTNAG | 1 cut(s) | 296 |
| BstDSI | CCRYGG | 1 cut(s) | 108 |
| BstF5I | GGATG | 5 cut(s) | 84, 90, 271, 610, 674 |
| BstFNI | CGCG | 2 cut(s) | 189, 348 |
| BstHHI | GCGC | 1 cut(s) | 348 |
| BstMAI | GTCTC | 1 cut(s) | 648 |
| BstMCI | CGRYCG | 1 cut(s) | 230 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 65, 104, 424, 427, 474, 486, 685, 704 |
| BstNI | CCWGG | 1 cut(s) | 399 |
| BstSCI | CCNGG | 1 cut(s) | 397 |
| BstUI | CGCG | 2 cut(s) | 189, 348 |
| BstV1I | GCAGC | 4 cut(s) | 430, 439, 464, 596 |
| BstV2I | GAAGAC | 1 cut(s) | 431 |
| BstX2I | RGATCY | 1 cut(s) | 214 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 139 |
| BstYI | RGATCY | 1 cut(s) | 214 |
| BstZI | CGGCCG | 1 cut(s) | 227 |
| BsuRI | GGCC | 6 cut(s) | 5, 107, 229, 301, 679, 688 |
| BtgI | CCRYGG | 1 cut(s) | 108 |
| BtsCI | GGATG | 5 cut(s) | 84, 90, 271, 610, 674 |
| BtsIMutI | CAGTG | 2 cut(s) | 430, 480 |
| Cac8I | GCNNGC | 2 cut(s) | 13, 510 |
| CfoI | GCGC | 1 cut(s) | 348 |
| Cfr10I | RCCGGY | 1 cut(s) | 196 |
| Cfr13I | GGNCC | 3 cut(s) | 105, 677, 686 |
| CspAI | ACCGGT | 1 cut(s) | 196 |
| CviAII | CATG | 2 cut(s) | 109, 588 |
| DdeI | CTNAG | 1 cut(s) | 296 |
| DraIII | CACNNNGTG | 1 cut(s) | 65 |
| EaeI | YGGCCR | 2 cut(s) | 3, 227 |
| EagI | CGGCCG | 1 cut(s) | 227 |
| EciI | GGCGGA | 2 cut(s) | 60, 176 |
| Ecl136II | GAGCTC | 2 cut(s) | 129, 306 |
| EclXI | CGGCCG | 1 cut(s) | 227 |
| Eco130I | CCWWGG | 7 cut(s) | 74, 108, 132, 233, 247, 513, 689 |
| Eco24I | GRGCYC | 3 cut(s) | 131, 308, 722 |
| Eco52I | CGGCCG | 1 cut(s) | 227 |
| Eco53kI | GAGCTC | 2 cut(s) | 129, 306 |
| Eco57I | CTGAAG | 1 cut(s) | 140 |
| EcoICRI | GAGCTC | 2 cut(s) | 129, 306 |
| EcoRII | CCWGG | 1 cut(s) | 397 |
| EcoT14I | CCWWGG | 7 cut(s) | 74, 108, 132, 233, 247, 513, 689 |
| EcoT38I | GRGCYC | 3 cut(s) | 131, 308, 722 |
| ErhI | CCWWGG | 7 cut(s) | 74, 108, 132, 233, 247, 513, 689 |
| FaeI | CATG | 2 cut(s) | 112, 591 |
| FaiI | YATR | 4 cut(s) | 110, 148, 492, 589 |
| FatI | CATG | 2 cut(s) | 108, 587 |
| Fnu4HI | GCNGC | 7 cut(s) | 230, 419, 428, 478, 585, 627, 630 |
| FokI | GGATG | 5 cut(s) | 91, 97, 278, 617, 681 |
| FriOI | GRGCYC | 3 cut(s) | 131, 308, 722 |
| Fsp4HI | GCNGC | 7 cut(s) | 230, 419, 428, 478, 585, 627, 630 |
| FspBI | CTAG | 1 cut(s) | 12 |
| GlaI | GCGC | 1 cut(s) | 347 |
| GluI | GCNGC | 7 cut(s) | 230, 419, 428, 478, 585, 627, 630 |
| GsuI | CTGGAG | 1 cut(s) | 420 |
| HaeIII | GGCC | 6 cut(s) | 5, 107, 229, 301, 679, 688 |
| HapII | CCGG | 1 cut(s) | 197 |
| HhaI | GCGC | 1 cut(s) | 348 |
| Hin1I | GRCGYC | 1 cut(s) | 529 |
| Hin1II | CATG | 2 cut(s) | 112, 591 |
| Hin6I | GCGC | 1 cut(s) | 346 |
| HinP1I | GCGC | 1 cut(s) | 346 |
| HincII | GTYRAC | 1 cut(s) | 194 |
| HindII | GTYRAC | 1 cut(s) | 194 |
| HinfI | GANTC | 3 cut(s) | 171, 523, 572 |
| HpaII | CCGG | 1 cut(s) | 197 |
| HphI | GGTGA | 1 cut(s) | 550 |
| Hpy166II | GTNNAC | 1 cut(s) | 194 |
| Hpy188I | TCNGA | 5 cut(s) | 120, 297, 375, 382, 577 |
| Hpy188III | TCNNGA | 2 cut(s) | 175, 212 |
| Hpy8I | GTNNAC | 1 cut(s) | 194 |
| Hpy99I | CGWCG | 2 cut(s) | 386, 531 |
| HpyCH4III | ACNGT | 4 cut(s) | 314, 386, 454, 665 |
| HpyCH4IV | ACGT | 1 cut(s) | 529 |
| HpyCH4V | TGCA | 2 cut(s) | 335, 480 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 65, 104, 424, 427, 474, 486, 685, 704 |
| HpyF3I | CTNAG | 1 cut(s) | 296 |
| HpySE526I | ACGT | 1 cut(s) | 529 |
| Hsp92I | GRCGYC | 1 cut(s) | 529 |
| Hsp92II | CATG | 2 cut(s) | 112, 591 |
| HspAI | GCGC | 1 cut(s) | 346 |
| LmnI | GCTCC | 5 cut(s) | 73, 134, 142, 394, 657 |
| Lsp1109I | GCAGC | 4 cut(s) | 430, 439, 464, 596 |
| LweI | GCATC | 1 cut(s) | 213 |
| MaeI | CTAG | 1 cut(s) | 12 |
| MaeII | ACGT | 1 cut(s) | 529 |
| MaeIII | GTNAC | 1 cut(s) | 448 |
| MboII | GAAGA | 3 cut(s) | 29, 431, 434 |
| MflI | RGATCY | 1 cut(s) | 214 |
| MhlI | GDGCHC | 4 cut(s) | 70, 131, 308, 722 |
| MlsI | TGGCCA | 1 cut(s) | 5 |
| MluNI | TGGCCA | 1 cut(s) | 5 |
| MlyI | GAGTC | 2 cut(s) | 180, 581 |
| MmeI | TCCRAC | 4 cut(s) | 392, 405, 500, 555 |
| MnlI | CCTC | 4 cut(s) | 291, 408, 546, 604 |
| Mox20I | TGGCCA | 1 cut(s) | 5 |
| MscI | TGGCCA | 1 cut(s) | 5 |
| MseI | TTAA | 1 cut(s) | 156 |
| Msp20I | TGGCCA | 1 cut(s) | 5 |
| MspI | CCGG | 1 cut(s) | 197 |
| MspR9I | CCNGG | 1 cut(s) | 399 |
| MvaI | CCWGG | 1 cut(s) | 399 |
| MvnI | CGCG | 2 cut(s) | 189, 348 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 65, 104, 424, 427, 474, 486, 685, 704 |
| NcoI | CCATGG | 1 cut(s) | 108 |
| NheI | GCTAGC | 1 cut(s) | 11 |
| NlaIII | CATG | 2 cut(s) | 112, 591 |
| NlaIV | GGNNCC | 2 cut(s) | 245, 396 |
| NmeAIII | GCCGAG | 2 cut(s) | 150, 327 |
| PfeI | GAWTC | 1 cut(s) | 523 |
| PflFI | GACNNNGTC | 2 cut(s) | 353, 571 |
| PinAI | ACCGGT | 1 cut(s) | 196 |
| PkrI | GCNGC | 7 cut(s) | 231, 420, 429, 479, 586, 628, 631 |
| PleI | GAGTC | 2 cut(s) | 179, 580 |
| PpsI | GAGTC | 2 cut(s) | 179, 580 |
| Psp124BI | GAGCTC | 2 cut(s) | 131, 308 |
| Psp6I | CCWGG | 1 cut(s) | 397 |
| PspGI | CCWGG | 1 cut(s) | 397 |
| PspN4I | GGNNCC | 2 cut(s) | 245, 396 |
| PspPI | GGNCC | 3 cut(s) | 105, 677, 686 |
| PsuI | RGATCY | 1 cut(s) | 214 |
| PsyI | GACNNNGTC | 2 cut(s) | 353, 571 |
| SacI | GAGCTC | 2 cut(s) | 131, 308 |
| SaqAI | TTAA | 1 cut(s) | 156 |
| SatI | GCNGC | 7 cut(s) | 230, 419, 428, 478, 585, 627, 630 |
| Sau96I | GGNCC | 3 cut(s) | 105, 677, 686 |
| SchI | GAGTC | 2 cut(s) | 180, 581 |
| ScrFI | CCNGG | 1 cut(s) | 399 |
| SduI | GDGCHC | 4 cut(s) | 70, 131, 308, 722 |
| SetI | ASST | 7 cut(s) | 131, 147, 275, 308, 532, 557, 615 |
| SfaNI | GCATC | 1 cut(s) | 213 |
| SfiI | GGCCNNNNNGGCC | 1 cut(s) | 685 |
| SsiI | CCGC | 6 cut(s) | 71, 161, 189, 230, 626, 629 |
| SspMI | CTAG | 1 cut(s) | 12 |
| SstI | GAGCTC | 2 cut(s) | 131, 308 |
| StyD4I | CCNGG | 1 cut(s) | 397 |
| StyI | CCWWGG | 7 cut(s) | 74, 108, 132, 233, 247, 513, 689 |
| TaaI | ACNGT | 4 cut(s) | 314, 386, 454, 665 |
| TaiI | ACGT | 1 cut(s) | 532 |
| TaqI | TCGA | 2 cut(s) | 51, 526 |
| TaqII | GACCGA | 1 cut(s) | 197 |
| TauI | GCSGC | 3 cut(s) | 232, 629, 632 |
| TfiI | GAWTC | 1 cut(s) | 523 |
| Tru1I | TTAA | 1 cut(s) | 156 |
| Tru9I | TTAA | 1 cut(s) | 156 |
| TscAI | CASTG | 2 cut(s) | 437, 487 |
| TseI | GCWGC | 4 cut(s) | 418, 427, 477, 584 |
| TspGWI | ACGGA | 1 cut(s) | 584 |
| TspRI | CASTG | 2 cut(s) | 437, 487 |
| Tth111I | GACNNNGTC | 2 cut(s) | 353, 571 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 662, 687 |
| XspI | CTAG | 1 cut(s) | 12 |
| ZraI | GACGTC | 1 cut(s) | 530 |