Encoded by
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 1062, 1107 |
| AarI | CACCTGC | 1 cut(s) | 781 |
| Acc36I | ACCTGC | 2 cut(s) | 667, 781 |
| AccBSI | CCGCTC | 1 cut(s) | 1135 |
| AccII | CGCG | 1 cut(s) | 788 |
| AciI | CCGC | 6 cut(s) | 563, 631, 712, 1135, 1180, 1214 |
| AclWI | GGATC | 4 cut(s) | 90, 395, 1163, 1176 |
| AcuI | CTGAAG | 2 cut(s) | 126, 413 |
| AcyI | GRCGYC | 1 cut(s) | 443 |
| AfaI | GTAC | 2 cut(s) | 357, 836 |
| AfeI | AGCGCT | 2 cut(s) | 873, 884 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 350, 1121, 1122, 1147, 1148, 1189, 1242 |
| AflIII | ACRYGT | 2 cut(s) | 837, 1238 |
| AgsI | TTSAA | 4 cut(s) | 922, 929, 958, 1068 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 958 |
| AhlI | ACTAGT | 1 cut(s) | 388 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 870, 902 |
| AluBI | AGCT | 4 cut(s) | 230, 986, 1006, 1028 |
| AluI | AGCT | 4 cut(s) | 230, 986, 1006, 1028 |
| Alw26I | GTCTC | 3 cut(s) | 29, 216, 693 |
| AlwI | GGATC | 4 cut(s) | 90, 395, 1163, 1176 |
| Aor51HI | AGCGCT | 2 cut(s) | 873, 884 |
| AoxI | GGCC | 1 cut(s) | 1070 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 987 |
| AspLEI | GCGC | 6 cut(s) | 340, 788, 874, 885, 945, 1128 |
| AspS9I | GGNCC | 1 cut(s) | 1071 |
| AsuII | TTCGAA | 1 cut(s) | 157 |
| BamHI | GGATCC | 1 cut(s) | 1168 |
| BbsI | GAAGAC | 2 cut(s) | 21, 75 |
| BccI | CCATC | 1 cut(s) | 311 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 644, 659, 678, 687, 693, 721 |
| BciVI | GTATCC | 2 cut(s) | 285, 1210 |
| BclI | TGATCA | 1 cut(s) | 843 |
| BcoDI | GTCTC | 3 cut(s) | 29, 216, 693 |
| BcuI | ACTAGT | 1 cut(s) | 388 |
| BfaI | CTAG | 3 cut(s) | 389, 597, 875 |
| BfmI | CTRYAG | 2 cut(s) | 642, 1023 |
| BfoI | RGCGCY | 2 cut(s) | 875, 886 |
| BfuAI | ACCTGC | 2 cut(s) | 667, 781 |
| BfuI | GTATCC | 2 cut(s) | 285, 1210 |
| BglII | AGATCT | 1 cut(s) | 859 |
| BmcAI | AGTACT | 1 cut(s) | 357 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 958 |
| BmgT120I | GGNCC | 1 cut(s) | 1071 |
| BmiI | GGNNCC | 3 cut(s) | 463, 1139, 1170 |
| BmsI | GCATC | 4 cut(s) | 7, 324, 789, 841 |
| BpiI | GAAGAC | 2 cut(s) | 21, 75 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 249, 281 |
| BpmI | CTGGAG | 1 cut(s) | 588 |
| Bpu14I | TTCGAA | 1 cut(s) | 157 |
| BsaHI | GRCGYC | 1 cut(s) | 443 |
| BsaJI | CCNNGG | 1 cut(s) | 1222 |
| BsaXI | ACNNNNNCTCC | 7 cut(s) | 586, 616, 760, 790, 824, 854, 1237 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 350, 1121, 1122, 1147, 1148, 1189, 1242 |
| Bse1I | ACTGG | 1 cut(s) | 25 |
| Bse3DI | GCAATG | 4 cut(s) | 306, 456, 465, 1237 |
| BseDI | CCNNGG | 1 cut(s) | 1222 |
| BseGI | GGATG | 1 cut(s) | 144 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 350, 1121, 1122, 1147, 1148, 1189, 1242 |
| BseMI | GCAATG | 4 cut(s) | 306, 456, 465, 1237 |
| BseMII | CTCAG | 3 cut(s) | 164, 838, 1020 |
| BseNI | ACTGG | 1 cut(s) | 25 |
| BseRI | GAGGAG | 1 cut(s) | 899 |
| BseYI | CCCAGC | 1 cut(s) | 125 |
| BsgI | GTGCAG | 1 cut(s) | 577 |
| Bsh1236I | CGCG | 1 cut(s) | 788 |
| BshFI | GGCC | 1 cut(s) | 1072 |
| BslFI | GGGAC | 4 cut(s) | 554, 595, 1164, 1173 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 350, 1121, 1122, 1147, 1148, 1189, 1242 |
| BsmAI | GTCTC | 3 cut(s) | 29, 216, 693 |
| BsmFI | GGGAC | 4 cut(s) | 554, 595, 1164, 1173 |
| BsnI | GGCC | 1 cut(s) | 1072 |
| Bsp119I | TTCGAA | 1 cut(s) | 157 |
| Bsp143I | GATC | 5 cut(s) | 82, 400, 843, 859, 1168 |
| BspACI | CCGC | 6 cut(s) | 563, 631, 712, 1135, 1180, 1214 |
| BspANI | GGCC | 1 cut(s) | 1072 |
| BspCNI | CTCAG | 3 cut(s) | 163, 837, 1021 |
| BspFNI | CGCG | 1 cut(s) | 788 |
| BspHI | TCATGA | 1 cut(s) | 1093 |
| BspLI | GGNNCC | 3 cut(s) | 463, 1139, 1170 |
| BspMI | ACCTGC | 2 cut(s) | 667, 781 |
| BspPI | GGATC | 4 cut(s) | 90, 395, 1163, 1176 |
| BspQI | GCTCTTC | 2 cut(s) | 873, 993 |
| BspT104I | TTCGAA | 1 cut(s) | 157 |
| BsrBI | CCGCTC | 1 cut(s) | 1135 |
| BsrDI | GCAATG | 4 cut(s) | 306, 456, 465, 1237 |
| BsrI | ACTGG | 1 cut(s) | 25 |
| BssECI | CCNNGG | 1 cut(s) | 1222 |
| BssMI | GATC | 5 cut(s) | 82, 400, 843, 859, 1168 |
| BssNI | GRCGYC | 1 cut(s) | 443 |
| Bst4CI | ACNGT | 1 cut(s) | 100 |
| Bst6I | CTCTTC | 2 cut(s) | 873, 993 |
| BstACI | GRCGYC | 1 cut(s) | 443 |
| BstBI | TTCGAA | 1 cut(s) | 157 |
| BstC8I | GCNNGC | 4 cut(s) | 313, 447, 577, 738 |
| BstDEI | CTNAG | 5 cut(s) | 117, 150, 824, 1029, 1083 |
| BstDSI | CCRYGG | 1 cut(s) | 1222 |
| BstF5I | GGATG | 1 cut(s) | 144 |
| BstFNI | CGCG | 1 cut(s) | 788 |
| BstH2I | RGCGCY | 2 cut(s) | 875, 886 |
| BstHHI | GCGC | 6 cut(s) | 340, 788, 874, 885, 945, 1128 |
| BstKTI | GATC | 5 cut(s) | 85, 403, 846, 862, 1171 |
| BstMAI | GTCTC | 3 cut(s) | 29, 216, 693 |
| BstMBI | GATC | 5 cut(s) | 82, 400, 843, 859, 1168 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 179, 188, 614, 659, 702, 711, 733, 880, 1132 |
| BstNSI | RCATGY | 3 cut(s) | 786, 841, 1242 |
| BstSFI | CTRYAG | 2 cut(s) | 642, 1023 |
| BstUI | CGCG | 1 cut(s) | 788 |
| BstV2I | GAAGAC | 2 cut(s) | 21, 75 |
| BstX2I | RGATCY | 2 cut(s) | 859, 1168 |
| BstYI | RGATCY | 2 cut(s) | 859, 1168 |
| BsuI | GTATCC | 2 cut(s) | 285, 1210 |
| BsuRI | GGCC | 1 cut(s) | 1072 |
| BtgI | CCRYGG | 1 cut(s) | 1222 |
| BtsCI | GGATG | 1 cut(s) | 144 |
| BtsI | GCAGTG | 2 cut(s) | 633, 722 |
| BtsIMutI | CAGTG | 3 cut(s) | 444, 633, 722 |
| BveI | ACCTGC | 2 cut(s) | 667, 781 |
| Cac8I | GCNNGC | 4 cut(s) | 313, 447, 577, 738 |
| CciI | TCATGA | 1 cut(s) | 1093 |
| CfoI | GCGC | 6 cut(s) | 340, 788, 874, 885, 945, 1128 |
| Cfr13I | GGNCC | 1 cut(s) | 1071 |
| CseI | GACGC | 3 cut(s) | 188, 451, 597 |
| Csp6I | GTAC | 2 cut(s) | 356, 835 |
| CviAII | CATG | 7 cut(s) | 457, 783, 838, 1037, 1094, 1154, 1239 |
| CviJI | RGCY | 8 cut(s) | 230, 579, 600, 986, 1006, 1028, 1072, 1179 |
| CviKI_1 | RGCY | 8 cut(s) | 230, 579, 600, 986, 1006, 1028, 1072, 1179 |
| CviQI | GTAC | 2 cut(s) | 356, 835 |
| DdeI | CTNAG | 5 cut(s) | 117, 150, 824, 1029, 1083 |
| DpnI | GATC | 5 cut(s) | 84, 402, 845, 861, 1170 |
| DpnII | GATC | 5 cut(s) | 82, 400, 843, 859, 1168 |
| DriI | GACNNNNNGTC | 1 cut(s) | 958 |
| Eam1104I | CTCTTC | 2 cut(s) | 873, 993 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 958 |
| EarI | CTCTTC | 2 cut(s) | 873, 993 |
| Eco32I | GATATC | 1 cut(s) | 540 |
| Eco47III | AGCGCT | 2 cut(s) | 873, 884 |
| Eco57I | CTGAAG | 2 cut(s) | 126, 413 |
| EcoRV | GATATC | 1 cut(s) | 540 |
| FaeI | CATG | 7 cut(s) | 460, 786, 841, 1040, 1097, 1157, 1242 |
| FaqI | GGGAC | 4 cut(s) | 554, 595, 1164, 1173 |
| FatI | CATG | 7 cut(s) | 456, 782, 837, 1036, 1093, 1153, 1238 |
| FauNDI | CATATG | 1 cut(s) | 810 |
| FbaI | TGATCA | 1 cut(s) | 843 |
| FokI | GGATG | 1 cut(s) | 131 |
| FspBI | CTAG | 3 cut(s) | 389, 597, 875 |
| GlaI | GCGC | 6 cut(s) | 339, 787, 873, 884, 944, 1127 |
| GsaI | CCCAGC | 1 cut(s) | 129 |
| GsuI | CTGGAG | 1 cut(s) | 588 |
| HaeII | RGCGCY | 2 cut(s) | 875, 886 |
| HaeIII | GGCC | 1 cut(s) | 1072 |
| HgaI | GACGC | 3 cut(s) | 188, 451, 597 |
| HhaI | GCGC | 6 cut(s) | 340, 788, 874, 885, 945, 1128 |
| Hin1I | GRCGYC | 1 cut(s) | 443 |
| Hin1II | CATG | 7 cut(s) | 460, 786, 841, 1040, 1097, 1157, 1242 |
| Hin6I | GCGC | 6 cut(s) | 338, 786, 872, 883, 943, 1126 |
| HinP1I | GCGC | 6 cut(s) | 338, 786, 872, 883, 943, 1126 |
| HincII | GTYRAC | 1 cut(s) | 202 |
| HindII | GTYRAC | 1 cut(s) | 202 |
| HinfI | GANTC | 5 cut(s) | 37, 141, 154, 203, 902 |
| Hpy166II | GTNNAC | 2 cut(s) | 202, 519 |
| Hpy188I | TCNGA | 5 cut(s) | 34, 106, 153, 827, 982 |
| Hpy188III | TCNNGA | 2 cut(s) | 14, 1094 |
| Hpy8I | GTNNAC | 2 cut(s) | 202, 519 |
| Hpy99I | CGWCG | 1 cut(s) | 182 |
| HpyAV | CCTTC | 4 cut(s) | 101, 559, 916, 1187 |
| HpyCH4III | ACNGT | 1 cut(s) | 100 |
| HpyCH4IV | ACGT | 1 cut(s) | 1162 |
| HpyCH4V | TGCA | 6 cut(s) | 92, 449, 594, 622, 854, 1112 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 179, 188, 614, 659, 702, 711, 733, 880, 1132 |
| HpyF3I | CTNAG | 5 cut(s) | 117, 150, 824, 1029, 1083 |
| HpySE526I | ACGT | 1 cut(s) | 1162 |
| Hsp92I | GRCGYC | 1 cut(s) | 443 |
| Hsp92II | CATG | 7 cut(s) | 460, 786, 841, 1040, 1097, 1157, 1242 |
| HspAI | GCGC | 6 cut(s) | 338, 786, 872, 883, 943, 1126 |
| Ksp22I | TGATCA | 1 cut(s) | 843 |
| Kzo9I | GATC | 5 cut(s) | 82, 400, 843, 859, 1168 |
| LguI | GCTCTTC | 2 cut(s) | 873, 993 |
| LmnI | GCTCC | 3 cut(s) | 187, 781, 1132 |
| LweI | GCATC | 4 cut(s) | 7, 324, 789, 841 |
| MaeI | CTAG | 3 cut(s) | 389, 597, 875 |
| MaeII | ACGT | 1 cut(s) | 1162 |
| MaeIII | GTNAC | 3 cut(s) | 391, 439, 1051 |
| MalI | GATC | 5 cut(s) | 84, 402, 845, 861, 1170 |
| MbiI | CCGCTC | 1 cut(s) | 1135 |
| MboI | GATC | 5 cut(s) | 82, 400, 843, 859, 1168 |
| MboII | GAAGA | 5 cut(s) | 21, 80, 413, 890, 980 |
| MfeI | CAATTG | 2 cut(s) | 473, 748 |
| MflI | RGATCY | 2 cut(s) | 859, 1168 |
| MluCI | AATT | 9 cut(s) | 135, 368, 473, 672, 748, 976, 1057, 1063, 1102 |
| MlyI | GAGTC | 3 cut(s) | 31, 135, 197 |
| MmeI | TCCRAC | 1 cut(s) | 803 |
| MroXI | GAANNNNTTC | 1 cut(s) | 987 |
| MseI | TTAA | 5 cut(s) | 270, 327, 366, 371, 383 |
| MslI | CAYNNNNRTG | 2 cut(s) | 797, 1049 |
| MunI | CAATTG | 2 cut(s) | 473, 748 |
| MvnI | CGCG | 1 cut(s) | 788 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 179, 188, 614, 659, 702, 711, 733, 880, 1132 |
| NdeI | CATATG | 1 cut(s) | 810 |
| NdeII | GATC | 5 cut(s) | 82, 400, 843, 859, 1168 |
| NlaIII | CATG | 7 cut(s) | 460, 786, 841, 1040, 1097, 1157, 1242 |
| NlaIV | GGNNCC | 3 cut(s) | 463, 1139, 1170 |
| NmeAIII | GCCGAG | 1 cut(s) | 722 |
| NmuCI | GTSAC | 3 cut(s) | 391, 439, 1051 |
| NspI | RCATGY | 3 cut(s) | 786, 841, 1242 |
| NspV | TTCGAA | 1 cut(s) | 157 |
| PagI | TCATGA | 1 cut(s) | 1093 |
| PaqCI | CACCTGC | 1 cut(s) | 781 |
| PciI | ACATGT | 2 cut(s) | 837, 1238 |
| PciSI | GCTCTTC | 2 cut(s) | 873, 993 |
| PdmI | GAANNNNTTC | 1 cut(s) | 987 |
| PfeI | GAWTC | 2 cut(s) | 154, 902 |
| PleI | GAGTC | 3 cut(s) | 31, 135, 197 |
| PpsI | GAGTC | 3 cut(s) | 31, 135, 197 |
| PscI | ACATGT | 2 cut(s) | 837, 1238 |
| PsiI | TTATAA | 2 cut(s) | 1062, 1107 |
| PspFI | CCCAGC | 1 cut(s) | 125 |
| PspN4I | GGNNCC | 3 cut(s) | 463, 1139, 1170 |
| PspPI | GGNCC | 1 cut(s) | 1071 |
| PsuI | RGATCY | 2 cut(s) | 859, 1168 |
| RsaI | GTAC | 2 cut(s) | 357, 836 |
| RsaNI | GTAC | 2 cut(s) | 356, 835 |
| RseI | CAYNNNNRTG | 2 cut(s) | 797, 1049 |
| SapI | GCTCTTC | 2 cut(s) | 873, 993 |
| SaqAI | TTAA | 5 cut(s) | 270, 327, 366, 371, 383 |
| Sau3AI | GATC | 5 cut(s) | 82, 400, 843, 859, 1168 |
| Sau96I | GGNCC | 1 cut(s) | 1071 |
| ScaI | AGTACT | 1 cut(s) | 357 |
| SchI | GAGTC | 3 cut(s) | 31, 135, 197 |
| SfaNI | GCATC | 4 cut(s) | 7, 324, 789, 841 |
| SfcI | CTRYAG | 2 cut(s) | 642, 1023 |
| SfuI | TTCGAA | 1 cut(s) | 157 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 797, 1049 |
| SpeI | ACTAGT | 1 cut(s) | 388 |
| Sse9I | AATT | 9 cut(s) | 135, 368, 473, 672, 748, 976, 1057, 1063, 1102 |
| SsiI | CCGC | 6 cut(s) | 563, 631, 712, 1135, 1180, 1214 |
| SspMI | CTAG | 3 cut(s) | 389, 597, 875 |
| TaaI | ACNGT | 1 cut(s) | 100 |
| TaiI | ACGT | 1 cut(s) | 1165 |
| TaqI | TCGA | 3 cut(s) | 157, 586, 669 |
| TasI | AATT | 9 cut(s) | 135, 368, 473, 672, 748, 976, 1057, 1063, 1102 |
| TatI | WGTACW | 2 cut(s) | 355, 834 |
| TauI | GCSGC | 3 cut(s) | 633, 714, 1182 |
| TfiI | GAWTC | 2 cut(s) | 154, 902 |
| Tru1I | TTAA | 5 cut(s) | 270, 327, 366, 371, 383 |
| Tru9I | TTAA | 5 cut(s) | 270, 327, 366, 371, 383 |
| TscAI | CASTG | 3 cut(s) | 444, 640, 729 |
| TseFI | GTSAC | 3 cut(s) | 391, 439, 1051 |
| Tsp45I | GTSAC | 3 cut(s) | 391, 439, 1051 |
| TspDTI | ATGAA | 4 cut(s) | 467, 781, 989, 1082 |
| TspRI | CASTG | 3 cut(s) | 444, 640, 729 |
| XceI | RCATGY | 3 cut(s) | 786, 841, 1242 |
| XmnI | GAANNNNTTC | 1 cut(s) | 987 |
| XspI | CTAG | 3 cut(s) | 389, 597, 875 |
| ZrmI | AGTACT | 1 cut(s) | 357 |