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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 696 |
| AatII | GACGTC | 1 cut(s) | 193 |
| Acc65I | GGTACC | 1 cut(s) | 127 |
| AccB1I | GGYRCC | 1 cut(s) | 127 |
| AccI | GTMKAC | 1 cut(s) | 782 |
| AccIII | TCCGGA | 2 cut(s) | 363, 952 |
| AciI | CCGC | 4 cut(s) | 203, 248, 303, 664 |
| AclWI | GGATC | 6 cut(s) | 20, 58, 71, 538, 854, 924 |
| AcsI | RAATTY | 3 cut(s) | 48, 94, 288 |
| AcyI | GRCGYC | 1 cut(s) | 190 |
| AfaI | GTAC | 4 cut(s) | 36, 129, 437, 551 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 108, 164, 223, 230, 237, 244, 251 |
| AgeI | ACCGGT | 1 cut(s) | 230 |
| AgsI | TTSAA | 2 cut(s) | 287, 679 |
| AjiI | CACGTC | 2 cut(s) | 353, 445 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 591, 623 |
| AluBI | AGCT | 5 cut(s) | 464, 470, 865, 875, 946 |
| AluI | AGCT | 5 cut(s) | 464, 470, 865, 875, 946 |
| Alw26I | GTCTC | 2 cut(s) | 278, 595 |
| AlwI | GGATC | 6 cut(s) | 20, 58, 71, 538, 854, 924 |
| Ama87I | CYCGRG | 1 cut(s) | 309 |
| Aor13HI | TCCGGA | 2 cut(s) | 363, 952 |
| ApeKI | GCWGC | 2 cut(s) | 305, 488 |
| ApoI | RAATTY | 3 cut(s) | 48, 94, 288 |
| AsiGI | ACCGGT | 1 cut(s) | 230 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 708 |
| Asp718I | GGTACC | 1 cut(s) | 127 |
| AspLEI | GCGC | 1 cut(s) | 336 |
| AsuHPI | GGTGA | 4 cut(s) | 224, 245, 266, 292 |
| AsuII | TTCGAA | 1 cut(s) | 52 |
| AvaI | CYCGRG | 1 cut(s) | 309 |
| BamHI | GGATCC | 1 cut(s) | 63 |
| BanI | GGYRCC | 1 cut(s) | 127 |
| BanII | GRGCYC | 1 cut(s) | 264 |
| BbsI | GAAGAC | 2 cut(s) | 576, 779 |
| BbvI | GCAGC | 2 cut(s) | 317, 500 |
| BccI | CCATC | 7 cut(s) | 31, 77, 117, 133, 161, 645, 799 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 818, 852 |
| BcoDI | GTCTC | 2 cut(s) | 278, 595 |
| BfaI | CTAG | 2 cut(s) | 338, 641 |
| BfoI | RGCGCY | 1 cut(s) | 337 |
| BisI | GCNGC | 4 cut(s) | 204, 249, 306, 489 |
| BlsI | GCNGC | 4 cut(s) | 205, 250, 307, 490 |
| BmeT110I | CYCGRG | 1 cut(s) | 309 |
| BmgBI | CACGTC | 2 cut(s) | 353, 445 |
| BmiI | GGNNCC | 3 cut(s) | 65, 129, 263 |
| BpiI | GAAGAC | 2 cut(s) | 576, 779 |
| BpmI | CTGGAG | 1 cut(s) | 559 |
| Bpu14I | TTCGAA | 1 cut(s) | 52 |
| BpuEI | CTTGAG | 1 cut(s) | 450 |
| Bsa29I | ATCGAT | 1 cut(s) | 828 |
| BsaBI | GATNNNNATC | 2 cut(s) | 11, 68 |
| BsaHI | GRCGYC | 1 cut(s) | 190 |
| BsaI | GGTCTC | 1 cut(s) | 595 |
| BsaWI | WCCGGW | 5 cut(s) | 216, 230, 237, 363, 952 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 108, 164, 223, 230, 237, 244, 251 |
| Bse118I | RCCGGY | 1 cut(s) | 230 |
| Bse1I | ACTGG | 2 cut(s) | 415, 547 |
| Bse8I | GATNNNNATC | 2 cut(s) | 11, 68 |
| BseAI | TCCGGA | 2 cut(s) | 363, 952 |
| BseCI | ATCGAT | 1 cut(s) | 828 |
| BseGI | GGATG | 7 cut(s) | 12, 23, 69, 153, 372, 541, 903 |
| BseJI | GATNNNNATC | 2 cut(s) | 11, 68 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 108, 164, 223, 230, 237, 244, 251 |
| BseNI | ACTGG | 2 cut(s) | 415, 547 |
| BseRI | GAGGAG | 1 cut(s) | 512 |
| BseXI | GCAGC | 2 cut(s) | 317, 500 |
| Bsh1285I | CGRYCG | 1 cut(s) | 231 |
| BshNI | GGYRCC | 1 cut(s) | 127 |
| BshTI | ACCGGT | 1 cut(s) | 230 |
| BshVI | ATCGAT | 1 cut(s) | 828 |
| BsiEI | CGRYCG | 1 cut(s) | 231 |
| BsiHKCI | CYCGRG | 1 cut(s) | 309 |
| BsiSI | CCGG | 8 cut(s) | 217, 224, 231, 238, 245, 265, 364, 953 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 108, 164, 223, 230, 237, 244, 251 |
| BsmAI | GTCTC | 2 cut(s) | 278, 595 |
| Bso31I | GGTCTC | 1 cut(s) | 595 |
| BsoBI | CYCGRG | 1 cut(s) | 309 |
| Bsp119I | TTCGAA | 1 cut(s) | 52 |
| Bsp1286I | GDGCHC | 1 cut(s) | 264 |
| Bsp13I | TCCGGA | 2 cut(s) | 363, 952 |
| Bsp143I | GATC | 6 cut(s) | 12, 63, 543, 747, 846, 929 |
| BspACI | CCGC | 4 cut(s) | 203, 248, 303, 664 |
| BspDI | ATCGAT | 1 cut(s) | 828 |
| BspEI | TCCGGA | 2 cut(s) | 363, 952 |
| BspHI | TCATGA | 1 cut(s) | 859 |
| BspLI | GGNNCC | 3 cut(s) | 65, 129, 263 |
| BspPI | GGATC | 6 cut(s) | 20, 58, 71, 538, 854, 924 |
| BspT104I | TTCGAA | 1 cut(s) | 52 |
| BspT107I | GGYRCC | 1 cut(s) | 127 |
| BspTNI | GGTCTC | 1 cut(s) | 595 |
| BsrFI | RCCGGY | 1 cut(s) | 230 |
| BsrI | ACTGG | 2 cut(s) | 415, 547 |
| BssAI | RCCGGY | 1 cut(s) | 230 |
| BssMI | GATC | 6 cut(s) | 12, 63, 543, 747, 846, 929 |
| BssNI | GRCGYC | 1 cut(s) | 190 |
| Bst4CI | ACNGT | 1 cut(s) | 329 |
| BstACI | GRCGYC | 1 cut(s) | 190 |
| BstBI | TTCGAA | 1 cut(s) | 52 |
| BstC8I | GCNNGC | 2 cut(s) | 347, 462 |
| BstDEI | CTNAG | 2 cut(s) | 493, 813 |
| BstEII | GGTNACC | 2 cut(s) | 212, 233 |
| BstF5I | GGATG | 7 cut(s) | 12, 23, 69, 153, 372, 541, 903 |
| BstH2I | RGCGCY | 1 cut(s) | 337 |
| BstHHI | GCGC | 1 cut(s) | 336 |
| BstKTI | GATC | 6 cut(s) | 15, 66, 546, 750, 849, 932 |
| BstMAI | GTCTC | 2 cut(s) | 278, 595 |
| BstMBI | GATC | 6 cut(s) | 12, 63, 543, 747, 846, 929 |
| BstMCI | CGRYCG | 1 cut(s) | 231 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 311, 320, 342, 355, 476, 485 |
| BstPI | GGTNACC | 2 cut(s) | 212, 233 |
| BstV1I | GCAGC | 2 cut(s) | 317, 500 |
| BstV2I | GAAGAC | 2 cut(s) | 576, 779 |
| BstX2I | RGATCY | 2 cut(s) | 63, 929 |
| BstYI | RGATCY | 2 cut(s) | 63, 929 |
| Bsu15I | ATCGAT | 1 cut(s) | 828 |
| BsuTUI | ATCGAT | 1 cut(s) | 828 |
| BtrI | CACGTC | 2 cut(s) | 353, 445 |
| BtsCI | GGATG | 7 cut(s) | 12, 23, 69, 153, 372, 541, 903 |
| BtsI | GCAGTG | 1 cut(s) | 203 |
| BtsIMutI | CAGTG | 1 cut(s) | 203 |
| Cac8I | GCNNGC | 2 cut(s) | 347, 462 |
| CciI | TCATGA | 1 cut(s) | 859 |
| CfoI | GCGC | 1 cut(s) | 336 |
| Cfr10I | RCCGGY | 1 cut(s) | 230 |
| ClaI | ATCGAT | 1 cut(s) | 828 |
| Csp6I | GTAC | 4 cut(s) | 35, 128, 436, 550 |
| CspAI | ACCGGT | 1 cut(s) | 230 |
| CviAII | CATG | 6 cut(s) | 164, 279, 316, 620, 860, 896 |
| CviQI | GTAC | 4 cut(s) | 35, 128, 436, 550 |
| DdeI | CTNAG | 2 cut(s) | 493, 813 |
| DpnI | GATC | 6 cut(s) | 14, 65, 545, 749, 848, 931 |
| DpnII | GATC | 6 cut(s) | 12, 63, 543, 747, 846, 929 |
| Eco24I | GRGCYC | 1 cut(s) | 264 |
| Eco31I | GGTCTC | 1 cut(s) | 595 |
| Eco32I | GATATC | 1 cut(s) | 298 |
| Eco88I | CYCGRG | 1 cut(s) | 309 |
| Eco91I | GGTNACC | 2 cut(s) | 212, 233 |
| EcoO65I | GGTNACC | 2 cut(s) | 212, 233 |
| EcoRI | GAATTC | 1 cut(s) | 48 |
| EcoRV | GATATC | 1 cut(s) | 298 |
| EcoT38I | GRGCYC | 1 cut(s) | 264 |
| FaeI | CATG | 6 cut(s) | 167, 282, 319, 623, 863, 899 |
| FatI | CATG | 6 cut(s) | 163, 278, 315, 619, 859, 895 |
| FauNDI | CATATG | 1 cut(s) | 531 |
| FblI | GTMKAC | 1 cut(s) | 782 |
| Fnu4HI | GCNGC | 4 cut(s) | 204, 249, 306, 489 |
| FokI | GGATG | 7 cut(s) | 10, 19, 56, 140, 379, 548, 890 |
| FriOI | GRGCYC | 1 cut(s) | 264 |
| Fsp4HI | GCNGC | 4 cut(s) | 204, 249, 306, 489 |
| FspBI | CTAG | 2 cut(s) | 338, 641 |
| GlaI | GCGC | 1 cut(s) | 335 |
| GluI | GCNGC | 4 cut(s) | 204, 249, 306, 489 |
| GsuI | CTGGAG | 1 cut(s) | 559 |
| HaeII | RGCGCY | 1 cut(s) | 337 |
| HapII | CCGG | 8 cut(s) | 217, 224, 231, 238, 245, 265, 364, 953 |
| HhaI | GCGC | 1 cut(s) | 336 |
| Hin1I | GRCGYC | 1 cut(s) | 190 |
| Hin1II | CATG | 6 cut(s) | 167, 282, 319, 623, 863, 899 |
| Hin6I | GCGC | 1 cut(s) | 334 |
| HinP1I | GCGC | 1 cut(s) | 334 |
| HinfI | GANTC | 9 cut(s) | 220, 241, 523, 539, 572, 623, 775, 825, 956 |
| HpaII | CCGG | 8 cut(s) | 217, 224, 231, 238, 245, 265, 364, 953 |
| HphI | GGTGA | 4 cut(s) | 224, 245, 266, 292 |
| Hpy166II | GTNNAC | 1 cut(s) | 783 |
| Hpy188I | TCNGA | 4 cut(s) | 47, 188, 418, 703 |
| Hpy188III | TCNNGA | 8 cut(s) | 293, 364, 473, 576, 635, 689, 860, 953 |
| Hpy8I | GTNNAC | 1 cut(s) | 783 |
| Hpy99I | CGWCG | 2 cut(s) | 192, 195 |
| HpyAV | CCTTC | 4 cut(s) | 293, 573, 796, 802 |
| HpyCH4III | ACNGT | 1 cut(s) | 329 |
| HpyCH4IV | ACGT | 4 cut(s) | 190, 352, 444, 615 |
| HpyCH4V | TGCA | 2 cut(s) | 800, 839 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 311, 320, 342, 355, 476, 485 |
| HpyF3I | CTNAG | 2 cut(s) | 493, 813 |
| HpySE526I | ACGT | 4 cut(s) | 190, 352, 444, 615 |
| Hsp92I | GRCGYC | 1 cut(s) | 190 |
| Hsp92II | CATG | 6 cut(s) | 167, 282, 319, 623, 863, 899 |
| HspAI | GCGC | 1 cut(s) | 334 |
| Kpn2I | TCCGGA | 2 cut(s) | 363, 952 |
| KpnI | GGTACC | 1 cut(s) | 131 |
| Kzo9I | GATC | 6 cut(s) | 12, 63, 543, 747, 846, 929 |
| LmnI | GCTCC | 4 cut(s) | 167, 267, 400, 872 |
| Lsp1109I | GCAGC | 2 cut(s) | 317, 500 |
| MaeI | CTAG | 2 cut(s) | 338, 641 |
| MaeII | ACGT | 4 cut(s) | 190, 352, 444, 615 |
| MaeIII | GTNAC | 6 cut(s) | 76, 212, 233, 254, 371, 968 |
| MalI | GATC | 6 cut(s) | 14, 65, 545, 749, 848, 931 |
| MboI | GATC | 6 cut(s) | 12, 63, 543, 747, 846, 929 |
| MboII | GAAGA | 5 cut(s) | 578, 581, 611, 784, 925 |
| MflI | RGATCY | 2 cut(s) | 63, 929 |
| MhlI | GDGCHC | 1 cut(s) | 264 |
| MluCI | AATT | 8 cut(s) | 48, 94, 288, 383, 697, 731, 922, 961 |
| MlyI | GAGTC | 4 cut(s) | 517, 566, 617, 769 |
| MmeI | TCCRAC | 2 cut(s) | 211, 850 |
| MnlI | CCTC | 3 cut(s) | 490, 493, 671 |
| MroI | TCCGGA | 2 cut(s) | 363, 952 |
| MroXI | GAANNNNTTC | 1 cut(s) | 708 |
| MseI | TTAA | 2 cut(s) | 717, 725 |
| MslI | CAYNNNNRTG | 2 cut(s) | 534, 908 |
| MspI | CCGG | 8 cut(s) | 217, 224, 231, 238, 245, 265, 364, 953 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 311, 320, 342, 355, 476, 485 |
| NdeI | CATATG | 1 cut(s) | 531 |
| NdeII | GATC | 6 cut(s) | 12, 63, 543, 747, 846, 929 |
| NlaIII | CATG | 6 cut(s) | 167, 282, 319, 623, 863, 899 |
| NlaIV | GGNNCC | 3 cut(s) | 65, 129, 263 |
| NmuCI | GTSAC | 4 cut(s) | 212, 233, 254, 968 |
| NspV | TTCGAA | 1 cut(s) | 52 |
| PagI | TCATGA | 1 cut(s) | 859 |
| PdmI | GAANNNNTTC | 1 cut(s) | 708 |
| PfeI | GAWTC | 5 cut(s) | 220, 241, 539, 825, 956 |
| PflFI | GACNNNGTC | 1 cut(s) | 778 |
| PinAI | ACCGGT | 1 cut(s) | 230 |
| PkrI | GCNGC | 4 cut(s) | 205, 250, 307, 490 |
| PleI | GAGTC | 4 cut(s) | 517, 566, 617, 769 |
| PpsI | GAGTC | 4 cut(s) | 517, 566, 617, 769 |
| PsiI | TTATAA | 1 cut(s) | 696 |
| PspEI | GGTNACC | 2 cut(s) | 212, 233 |
| PspN4I | GGNNCC | 3 cut(s) | 65, 129, 263 |
| PsuI | RGATCY | 2 cut(s) | 63, 929 |
| PsyI | GACNNNGTC | 1 cut(s) | 778 |
| RsaI | GTAC | 4 cut(s) | 36, 129, 437, 551 |
| RsaNI | GTAC | 4 cut(s) | 35, 128, 436, 550 |
| RseI | CAYNNNNRTG | 2 cut(s) | 534, 908 |
| SaqAI | TTAA | 2 cut(s) | 717, 725 |
| SatI | GCNGC | 4 cut(s) | 204, 249, 306, 489 |
| Sau3AI | GATC | 6 cut(s) | 12, 63, 543, 747, 846, 929 |
| SchI | GAGTC | 4 cut(s) | 517, 566, 617, 769 |
| SduI | GDGCHC | 1 cut(s) | 264 |
| SfuI | TTCGAA | 1 cut(s) | 52 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 534, 908 |
| SmlI | CTYRAG | 1 cut(s) | 465 |
| SmoI | CTYRAG | 1 cut(s) | 465 |
| Sse9I | AATT | 8 cut(s) | 48, 94, 288, 383, 697, 731, 922, 961 |
| SsiI | CCGC | 4 cut(s) | 203, 248, 303, 664 |
| SspI | AATATT | 1 cut(s) | 57 |
| SspMI | CTAG | 2 cut(s) | 338, 641 |
| TaaI | ACNGT | 1 cut(s) | 329 |
| TaiI | ACGT | 4 cut(s) | 193, 355, 447, 618 |
| TaqI | TCGA | 6 cut(s) | 52, 113, 542, 597, 823, 828 |
| TasI | AATT | 8 cut(s) | 48, 94, 288, 383, 697, 731, 922, 961 |
| TatI | WGTACW | 1 cut(s) | 435 |
| TauI | GCSGC | 2 cut(s) | 206, 251 |
| TfiI | GAWTC | 5 cut(s) | 220, 241, 539, 825, 956 |
| Tru1I | TTAA | 2 cut(s) | 717, 725 |
| Tru9I | TTAA | 2 cut(s) | 717, 725 |
| TscAI | CASTG | 1 cut(s) | 203 |
| TseFI | GTSAC | 4 cut(s) | 212, 233, 254, 968 |
| TseI | GCWGC | 2 cut(s) | 305, 488 |
| Tsp45I | GTSAC | 4 cut(s) | 212, 233, 254, 968 |
| TspDTI | ATGAA | 4 cut(s) | 575, 579, 848, 893 |
| TspGWI | ACGGA | 2 cut(s) | 859, 922 |
| TspRI | CASTG | 1 cut(s) | 203 |
| Tth111I | GACNNNGTC | 1 cut(s) | 778 |
| XapI | RAATTY | 3 cut(s) | 48, 94, 288 |
| XmiI | GTMKAC | 1 cut(s) | 782 |
| XmnI | GAANNNNTTC | 1 cut(s) | 708 |
| XspI | CTAG | 2 cut(s) | 338, 641 |
| ZraI | GACGTC | 1 cut(s) | 191 |