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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 433 |
| AccB1I | GGYRCC | 1 cut(s) | 273 |
| AccIII | TCCGGA | 1 cut(s) | 353 |
| AcsI | RAATTY | 1 cut(s) | 132 |
| AfaI | GTAC | 1 cut(s) | 88 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 384, 455 |
| AflIII | ACRYGT | 1 cut(s) | 503 |
| AgsI | TTSAA | 1 cut(s) | 80 |
| AluBI | AGCT | 3 cut(s) | 108, 266, 288 |
| AluI | AGCT | 3 cut(s) | 108, 266, 288 |
| Alw21I | GWGCWC | 1 cut(s) | 485 |
| Alw26I | GTCTC | 1 cut(s) | 200 |
| Alw44I | GTGCAC | 1 cut(s) | 481 |
| Aor13HI | TCCGGA | 1 cut(s) | 353 |
| AoxI | GGCC | 1 cut(s) | 521 |
| ApaLI | GTGCAC | 1 cut(s) | 481 |
| ApeKI | GCWGC | 1 cut(s) | 2 |
| ApoI | RAATTY | 1 cut(s) | 132 |
| AspS9I | GGNCC | 1 cut(s) | 435 |
| AvaII | GGWCC | 1 cut(s) | 435 |
| AxyI | CCTNAGG | 1 cut(s) | 451 |
| BaeGI | GKGCMC | 2 cut(s) | 377, 485 |
| BanI | GGYRCC | 1 cut(s) | 273 |
| Bbv12I | GWGCWC | 1 cut(s) | 485 |
| BbvI | GCAGC | 1 cut(s) | 14 |
| BccI | CCATC | 1 cut(s) | 122 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 45, 79 |
| BcoDI | GTCTC | 1 cut(s) | 200 |
| BfaI | CTAG | 2 cut(s) | 241, 328 |
| BisI | GCNGC | 1 cut(s) | 3 |
| BlsI | GCNGC | 1 cut(s) | 4 |
| Bme18I | GGWCC | 1 cut(s) | 435 |
| BmgT120I | GGNCC | 1 cut(s) | 435 |
| BmiI | GGNNCC | 3 cut(s) | 275, 341, 489 |
| BmsI | GCATC | 1 cut(s) | 256 |
| BsaBI | GATNNNNATC | 1 cut(s) | 165 |
| BsaJI | CCNNGG | 3 cut(s) | 334, 379, 491 |
| BsaWI | WCCGGW | 2 cut(s) | 353, 531 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 384, 455 |
| Bse21I | CCTNAGG | 1 cut(s) | 451 |
| Bse8I | GATNNNNATC | 1 cut(s) | 165 |
| BseAI | TCCGGA | 1 cut(s) | 353 |
| BseDI | CCNNGG | 3 cut(s) | 334, 379, 491 |
| BseJI | GATNNNNATC | 1 cut(s) | 165 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 384, 455 |
| BseSI | GKGCMC | 2 cut(s) | 377, 485 |
| BseXI | GCAGC | 1 cut(s) | 14 |
| BshFI | GGCC | 1 cut(s) | 523 |
| BshNI | GGYRCC | 1 cut(s) | 273 |
| BsiHKAI | GWGCWC | 1 cut(s) | 485 |
| BsiSI | CCGG | 2 cut(s) | 354, 532 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 384, 455 |
| BsmAI | GTCTC | 1 cut(s) | 200 |
| BsmBI | CGTCTC | 1 cut(s) | 200 |
| BsnI | GGCC | 1 cut(s) | 523 |
| Bsp1286I | GDGCHC | 2 cut(s) | 377, 485 |
| Bsp13I | TCCGGA | 1 cut(s) | 353 |
| Bsp143I | GATC | 1 cut(s) | 166 |
| BspANI | GGCC | 1 cut(s) | 523 |
| BspEI | TCCGGA | 1 cut(s) | 353 |
| BspHI | TCATGA | 1 cut(s) | 260 |
| BspLI | GGNNCC | 3 cut(s) | 275, 341, 489 |
| BspT107I | GGYRCC | 1 cut(s) | 273 |
| BssECI | CCNNGG | 3 cut(s) | 334, 379, 491 |
| BssMI | GATC | 1 cut(s) | 166 |
| BssT1I | CCWWGG | 1 cut(s) | 379 |
| Bst4CI | ACNGT | 1 cut(s) | 492 |
| Bst6I | CTCTTC | 1 cut(s) | 504 |
| BstC8I | GCNNGC | 1 cut(s) | 481 |
| BstDEI | CTNAG | 3 cut(s) | 41, 406, 451 |
| BstDSI | CCRYGG | 2 cut(s) | 334, 491 |
| BstKTI | GATC | 1 cut(s) | 169 |
| BstMAI | GTCTC | 1 cut(s) | 200 |
| BstMBI | GATC | 1 cut(s) | 166 |
| BstSLI | GKGCMC | 2 cut(s) | 377, 485 |
| BstV1I | GCAGC | 1 cut(s) | 14 |
| Bsu36I | CCTNAGG | 1 cut(s) | 451 |
| BsuRI | GGCC | 1 cut(s) | 523 |
| BtgI | CCRYGG | 2 cut(s) | 334, 491 |
| BtsIMutI | CAGTG | 1 cut(s) | 151 |
| Cac8I | GCNNGC | 1 cut(s) | 481 |
| CciI | TCATGA | 1 cut(s) | 260 |
| Cfr13I | GGNCC | 1 cut(s) | 435 |
| CseI | GACGC | 2 cut(s) | 253, 397 |
| Csp6I | GTAC | 1 cut(s) | 87 |
| CviAII | CATG | 2 cut(s) | 261, 278 |
| CviJI | RGCY | 7 cut(s) | 61, 108, 213, 266, 288, 523, 528 |
| CviKI_1 | RGCY | 7 cut(s) | 61, 108, 213, 266, 288, 523, 528 |
| CviQI | GTAC | 1 cut(s) | 87 |
| DdeI | CTNAG | 3 cut(s) | 41, 406, 451 |
| DpnI | GATC | 1 cut(s) | 168 |
| DpnII | GATC | 1 cut(s) | 166 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 433 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 433 |
| Eam1104I | CTCTTC | 1 cut(s) | 504 |
| EarI | CTCTTC | 1 cut(s) | 504 |
| Eco130I | CCWWGG | 1 cut(s) | 379 |
| Eco47I | GGWCC | 1 cut(s) | 435 |
| Eco81I | CCTNAGG | 1 cut(s) | 451 |
| EcoT14I | CCWWGG | 1 cut(s) | 379 |
| ErhI | CCWWGG | 1 cut(s) | 379 |
| Esp3I | CGTCTC | 1 cut(s) | 200 |
| FaeI | CATG | 2 cut(s) | 264, 281 |
| FaiI | YATR | 8 cut(s) | 58, 126, 262, 279, 306, 322, 367, 440 |
| FatI | CATG | 2 cut(s) | 260, 277 |
| Fnu4HI | GCNGC | 1 cut(s) | 3 |
| Fsp4HI | GCNGC | 1 cut(s) | 3 |
| FspBI | CTAG | 2 cut(s) | 241, 328 |
| GluI | GCNGC | 1 cut(s) | 3 |
| HaeIII | GGCC | 1 cut(s) | 523 |
| HapII | CCGG | 2 cut(s) | 354, 532 |
| HgaI | GACGC | 2 cut(s) | 253, 397 |
| Hin1II | CATG | 2 cut(s) | 264, 281 |
| HinfI | GANTC | 2 cut(s) | 24, 357 |
| HpaII | CCGG | 2 cut(s) | 354, 532 |
| Hpy166II | GTNNAC | 3 cut(s) | 141, 483, 501 |
| Hpy188I | TCNGA | 2 cut(s) | 104, 226 |
| Hpy188III | TCNNGA | 6 cut(s) | 36, 170, 261, 328, 354, 424 |
| Hpy8I | GTNNAC | 3 cut(s) | 141, 483, 501 |
| HpyAV | CCTTC | 3 cut(s) | 72, 197, 453 |
| HpyCH4III | ACNGT | 1 cut(s) | 492 |
| HpyCH4IV | ACGT | 4 cut(s) | 16, 283, 428, 503 |
| HpyCH4V | TGCA | 1 cut(s) | 483 |
| HpyF3I | CTNAG | 3 cut(s) | 41, 406, 451 |
| HpySE526I | ACGT | 4 cut(s) | 16, 283, 428, 503 |
| Hsp92II | CATG | 2 cut(s) | 264, 281 |
| Kpn2I | TCCGGA | 1 cut(s) | 353 |
| Kzo9I | GATC | 1 cut(s) | 166 |
| LmnI | GCTCC | 1 cut(s) | 395 |
| LpnPI | CCDG | 5 cut(s) | 42, 49, 367, 409, 418 |
| Lsp1109I | GCAGC | 1 cut(s) | 14 |
| LweI | GCATC | 1 cut(s) | 256 |
| MaeI | CTAG | 2 cut(s) | 241, 328 |
| MaeII | ACGT | 4 cut(s) | 16, 283, 428, 503 |
| MalI | GATC | 1 cut(s) | 168 |
| MboI | GATC | 1 cut(s) | 166 |
| MboII | GAAGA | 2 cut(s) | 326, 521 |
| MhlI | GDGCHC | 2 cut(s) | 377, 485 |
| MluCI | AATT | 7 cut(s) | 80, 98, 132, 268, 349, 362, 419 |
| MlyI | GAGTC | 1 cut(s) | 366 |
| MnlI | CCTC | 4 cut(s) | 378, 449, 489, 513 |
| MroI | TCCGGA | 1 cut(s) | 353 |
| MslI | CAYNNNNRTG | 1 cut(s) | 309 |
| MspI | CCGG | 2 cut(s) | 354, 532 |
| NdeII | GATC | 1 cut(s) | 166 |
| NlaIII | CATG | 2 cut(s) | 264, 281 |
| NlaIV | GGNNCC | 3 cut(s) | 275, 341, 489 |
| PagI | TCATGA | 1 cut(s) | 260 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 395 |
| PfeI | GAWTC | 1 cut(s) | 24 |
| PkrI | GCNGC | 1 cut(s) | 4 |
| PleI | GAGTC | 1 cut(s) | 365 |
| PpsI | GAGTC | 1 cut(s) | 365 |
| PspN4I | GGNNCC | 3 cut(s) | 275, 341, 489 |
| PspPI | GGNCC | 1 cut(s) | 435 |
| RsaI | GTAC | 1 cut(s) | 88 |
| RsaNI | GTAC | 1 cut(s) | 87 |
| RseI | CAYNNNNRTG | 1 cut(s) | 309 |
| SatI | GCNGC | 1 cut(s) | 3 |
| Sau3AI | GATC | 1 cut(s) | 166 |
| Sau96I | GGNCC | 1 cut(s) | 435 |
| SchI | GAGTC | 1 cut(s) | 366 |
| SduI | GDGCHC | 2 cut(s) | 377, 485 |
| SetI | ASST | 9 cut(s) | 19, 110, 189, 268, 286, 290, 431, 500, 506 |
| SfaNI | GCATC | 1 cut(s) | 256 |
| SinI | GGWCC | 1 cut(s) | 435 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 309 |
| Sse9I | AATT | 7 cut(s) | 80, 98, 132, 268, 349, 362, 419 |
| SspMI | CTAG | 2 cut(s) | 241, 328 |
| StyI | CCWWGG | 1 cut(s) | 379 |
| TaaI | ACNGT | 1 cut(s) | 492 |
| TaiI | ACGT | 4 cut(s) | 19, 286, 431, 506 |
| TaqI | TCGA | 1 cut(s) | 169 |
| TasI | AATT | 7 cut(s) | 80, 98, 132, 268, 349, 362, 419 |
| TatI | WGTACW | 1 cut(s) | 86 |
| TfiI | GAWTC | 1 cut(s) | 24 |
| TscAI | CASTG | 1 cut(s) | 158 |
| TseI | GCWGC | 1 cut(s) | 2 |
| TspDTI | ATGAA | 2 cut(s) | 249, 294 |
| TspGWI | ACGGA | 3 cut(s) | 9, 102, 500 |
| TspRI | CASTG | 1 cut(s) | 158 |
| VneI | GTGCAC | 1 cut(s) | 481 |
| VpaK11BI | GGWCC | 1 cut(s) | 435 |
| XapI | RAATTY | 1 cut(s) | 132 |
| XbaI | TCTAGA | 1 cut(s) | 327 |
| XspI | CTAG | 2 cut(s) | 241, 328 |