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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 630 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 864 |
| AccB1I | GGYRCC | 1 cut(s) | 189 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 920 |
| AciI | CCGC | 4 cut(s) | 187, 727, 740, 978 |
| AclWI | GGATC | 1 cut(s) | 988 |
| AcvI | CACGTG | 2 cut(s) | 767, 803 |
| AdeI | CACNNNGTG | 3 cut(s) | 770, 788, 920 |
| AfaI | GTAC | 3 cut(s) | 221, 691, 1018 |
| AfeI | AGCGCT | 1 cut(s) | 258 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 64, 131, 393, 644, 645, 804, 904, 920, 944 |
| AflIII | ACRYGT | 5 cut(s) | 222, 764, 800, 963, 1065 |
| AgsI | TTSAA | 5 cut(s) | 96, 119, 307, 591, 1000 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 343 |
| AjiI | CACGTC | 3 cut(s) | 860, 881, 964 |
| AjnI | CCWGG | 1 cut(s) | 130 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 255, 287 |
| AluBI | AGCT | 7 cut(s) | 122, 173, 371, 529, 551, 1028, 1035 |
| AluI | AGCT | 7 cut(s) | 122, 173, 371, 529, 551, 1028, 1035 |
| Alw26I | GTCTC | 2 cut(s) | 237, 463 |
| AlwI | GGATC | 1 cut(s) | 988 |
| Aor51HI | AGCGCT | 1 cut(s) | 258 |
| AoxI | GGCC | 4 cut(s) | 133, 593, 694, 832 |
| ApaI | GGGCCC | 1 cut(s) | 698 |
| ApeKI | GCWGC | 2 cut(s) | 655, 1028 |
| AseI | ATTAAT | 1 cut(s) | 534 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 372 |
| AspA2I | CCTAGG | 1 cut(s) | 902 |
| AspLEI | GCGC | 2 cut(s) | 259, 651 |
| AspS9I | GGNCC | 4 cut(s) | 594, 694, 695, 832 |
| AvrII | CCTAGG | 1 cut(s) | 902 |
| BaeGI | GKGCMC | 1 cut(s) | 698 |
| BanI | GGYRCC | 1 cut(s) | 189 |
| BanII | GRGCYC | 1 cut(s) | 698 |
| BauI | CACGAG | 1 cut(s) | 747 |
| BbrPI | CACGTG | 2 cut(s) | 767, 803 |
| BbsI | GAAGAC | 1 cut(s) | 443 |
| BbvI | GCAGC | 2 cut(s) | 667, 1015 |
| BccI | CCATC | 1 cut(s) | 1054 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 482, 516 |
| BciT130I | CCWGG | 1 cut(s) | 132 |
| BciVI | GTATCC | 1 cut(s) | 809 |
| BcoDI | GTCTC | 2 cut(s) | 237, 463 |
| BfaI | CTAG | 5 cut(s) | 15, 240, 260, 903, 1025 |
| BfoI | RGCGCY | 1 cut(s) | 260 |
| BfuI | GTATCC | 1 cut(s) | 809 |
| BisI | GCNGC | 2 cut(s) | 656, 1029 |
| BlnI | CCTAGG | 1 cut(s) | 902 |
| BlsI | GCNGC | 2 cut(s) | 657, 1030 |
| BmcAI | AGTACT | 1 cut(s) | 1018 |
| Bme1390I | CCNGG | 1 cut(s) | 132 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 343 |
| BmgBI | CACGTC | 3 cut(s) | 860, 881, 964 |
| BmgT120I | GGNCC | 4 cut(s) | 594, 694, 695, 832 |
| BmiI | GGNNCC | 3 cut(s) | 191, 604, 696 |
| BmrFI | CCNGG | 1 cut(s) | 132 |
| BmsI | GCATC | 3 cut(s) | 174, 226, 879 |
| BoxI | GACNNNNGTC | 1 cut(s) | 966 |
| BpiI | GAAGAC | 1 cut(s) | 443 |
| BsaAI | YACGTR | 2 cut(s) | 767, 803 |
| BsaI | GGTCTC | 1 cut(s) | 237 |
| BsaJI | CCNNGG | 3 cut(s) | 58, 835, 902 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 919, 949 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 64, 131, 393, 644, 645, 804, 904, 920, 944 |
| Bse3DI | GCAATG | 1 cut(s) | 1010 |
| BseBI | CCWGG | 1 cut(s) | 132 |
| BseDI | CCNNGG | 3 cut(s) | 58, 835, 902 |
| BseGI | GGATG | 2 cut(s) | 567, 1065 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 64, 131, 393, 644, 645, 804, 904, 920, 944 |
| BseMI | GCAATG | 1 cut(s) | 1010 |
| BseMII | CTCAG | 2 cut(s) | 223, 474 |
| BseRI | GAGGAG | 1 cut(s) | 284 |
| BseSI | GKGCMC | 1 cut(s) | 698 |
| BseXI | GCAGC | 2 cut(s) | 667, 1015 |
| BsgI | GTGCAG | 1 cut(s) | 915 |
| BshFI | GGCC | 4 cut(s) | 135, 595, 696, 834 |
| BshNI | GGYRCC | 1 cut(s) | 189 |
| BsiWI | CGTACG | 1 cut(s) | 689 |
| BslFI | GGGAC | 2 cut(s) | 690, 870 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 64, 131, 393, 644, 645, 804, 904, 920, 944 |
| BsmAI | GTCTC | 2 cut(s) | 237, 463 |
| BsmBI | CGTCTC | 1 cut(s) | 463 |
| BsmFI | GGGAC | 2 cut(s) | 690, 870 |
| BsnI | GGCC | 4 cut(s) | 135, 595, 696, 834 |
| Bso31I | GGTCTC | 1 cut(s) | 237 |
| Bsp120I | GGGCCC | 1 cut(s) | 694 |
| Bsp1286I | GDGCHC | 1 cut(s) | 698 |
| Bsp143I | GATC | 1 cut(s) | 980 |
| Bsp19I | CCATGG | 1 cut(s) | 58 |
| BspACI | CCGC | 4 cut(s) | 187, 727, 740, 978 |
| BspANI | GGCC | 4 cut(s) | 135, 595, 696, 834 |
| BspCNI | CTCAG | 2 cut(s) | 222, 473 |
| BspLI | GGNNCC | 3 cut(s) | 191, 604, 696 |
| BspPI | GGATC | 1 cut(s) | 988 |
| BspQI | GCTCTTC | 2 cut(s) | 258, 378 |
| BspT107I | GGYRCC | 1 cut(s) | 189 |
| BspTNI | GGTCTC | 1 cut(s) | 237 |
| BsrDI | GCAATG | 1 cut(s) | 1010 |
| BssECI | CCNNGG | 3 cut(s) | 58, 835, 902 |
| BssMI | GATC | 1 cut(s) | 980 |
| BssSI | CACGAG | 1 cut(s) | 747 |
| BssT1I | CCWWGG | 2 cut(s) | 58, 902 |
| Bst2BI | CACGAG | 1 cut(s) | 747 |
| Bst2UI | CCWGG | 1 cut(s) | 132 |
| Bst6I | CTCTTC | 3 cut(s) | 258, 378, 414 |
| BstBAI | YACGTR | 2 cut(s) | 767, 803 |
| BstC8I | GCNNGC | 3 cut(s) | 165, 653, 1033 |
| BstDEI | CTNAG | 2 cut(s) | 209, 460 |
| BstDSI | CCRYGG | 1 cut(s) | 58 |
| BstEII | GGTNACC | 1 cut(s) | 67 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 129 |
| BstF5I | GGATG | 2 cut(s) | 567, 1065 |
| BstH2I | RGCGCY | 1 cut(s) | 260 |
| BstHHI | GCGC | 2 cut(s) | 259, 651 |
| BstKTI | GATC | 1 cut(s) | 983 |
| BstMAI | GTCTC | 2 cut(s) | 237, 463 |
| BstMBI | GATC | 1 cut(s) | 980 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 265, 655, 831 |
| BstNI | CCWGG | 1 cut(s) | 132 |
| BstNSI | RCATGY | 4 cut(s) | 34, 167, 226, 1069 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 966 |
| BstPI | GGTNACC | 1 cut(s) | 67 |
| BstSCI | CCNGG | 1 cut(s) | 130 |
| BstSLI | GKGCMC | 1 cut(s) | 698 |
| BstV1I | GCAGC | 2 cut(s) | 667, 1015 |
| BstV2I | GAAGAC | 1 cut(s) | 443 |
| BsuI | GTATCC | 1 cut(s) | 809 |
| BsuRI | GGCC | 4 cut(s) | 135, 595, 696, 834 |
| BtgI | CCRYGG | 1 cut(s) | 58 |
| BtrI | CACGTC | 3 cut(s) | 860, 881, 964 |
| BtsCI | GGATG | 2 cut(s) | 567, 1065 |
| BtsIMutI | CAGTG | 1 cut(s) | 320 |
| Cac8I | GCNNGC | 3 cut(s) | 165, 653, 1033 |
| CfoI | GCGC | 2 cut(s) | 259, 651 |
| Cfr13I | GGNCC | 4 cut(s) | 594, 694, 695, 832 |
| CseI | GACGC | 1 cut(s) | 601 |
| Csp6I | GTAC | 3 cut(s) | 220, 690, 1017 |
| CviAII | CATG | 9 cut(s) | 31, 59, 164, 223, 388, 785, 829, 1010, 1066 |
| CviQI | GTAC | 3 cut(s) | 220, 690, 1017 |
| DdeI | CTNAG | 2 cut(s) | 209, 460 |
| DpnI | GATC | 1 cut(s) | 982 |
| DpnII | GATC | 1 cut(s) | 980 |
| DraI | TTTAAA | 1 cut(s) | 736 |
| DraIII | CACNNNGTG | 3 cut(s) | 770, 788, 920 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 864 |
| DriI | GACNNNNNGTC | 1 cut(s) | 343 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 864 |
| Eam1104I | CTCTTC | 3 cut(s) | 258, 378, 414 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 343 |
| EarI | CTCTTC | 3 cut(s) | 258, 378, 414 |
| EciI | GGCGGA | 1 cut(s) | 993 |
| Eco130I | CCWWGG | 2 cut(s) | 58, 902 |
| Eco147I | AGGCCT | 1 cut(s) | 135 |
| Eco24I | GRGCYC | 1 cut(s) | 698 |
| Eco31I | GGTCTC | 1 cut(s) | 237 |
| Eco32I | GATATC | 1 cut(s) | 474 |
| Eco47III | AGCGCT | 1 cut(s) | 258 |
| Eco72I | CACGTG | 2 cut(s) | 767, 803 |
| Eco91I | GGTNACC | 1 cut(s) | 67 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 129 |
| EcoO65I | GGTNACC | 1 cut(s) | 67 |
| EcoRII | CCWGG | 1 cut(s) | 130 |
| EcoRV | GATATC | 1 cut(s) | 474 |
| EcoT14I | CCWWGG | 2 cut(s) | 58, 902 |
| EcoT38I | GRGCYC | 1 cut(s) | 698 |
| ErhI | CCWWGG | 2 cut(s) | 58, 902 |
| Esp3I | CGTCTC | 1 cut(s) | 463 |
| FaeI | CATG | 9 cut(s) | 34, 62, 167, 226, 391, 788, 832, 1013, 1069 |
| FaqI | GGGAC | 2 cut(s) | 690, 870 |
| FatI | CATG | 9 cut(s) | 30, 58, 163, 222, 387, 784, 828, 1009, 1065 |
| FauNDI | CATATG | 1 cut(s) | 195 |
| Fnu4HI | GCNGC | 2 cut(s) | 656, 1029 |
| FokI | GGATG | 1 cut(s) | 554 |
| FriOI | GRGCYC | 1 cut(s) | 698 |
| Fsp4HI | GCNGC | 2 cut(s) | 656, 1029 |
| FspBI | CTAG | 5 cut(s) | 15, 240, 260, 903, 1025 |
| GlaI | GCGC | 2 cut(s) | 258, 650 |
| GluI | GCNGC | 2 cut(s) | 656, 1029 |
| HaeII | RGCGCY | 1 cut(s) | 260 |
| HaeIII | GGCC | 4 cut(s) | 135, 595, 696, 834 |
| HgaI | GACGC | 1 cut(s) | 601 |
| HhaI | GCGC | 2 cut(s) | 259, 651 |
| Hin1II | CATG | 9 cut(s) | 34, 62, 167, 226, 391, 788, 832, 1013, 1069 |
| Hin6I | GCGC | 2 cut(s) | 257, 649 |
| HinP1I | GCGC | 2 cut(s) | 257, 649 |
| HinfI | GANTC | 4 cut(s) | 18, 38, 207, 439 |
| Hpy166II | GTNNAC | 1 cut(s) | 923 |
| Hpy188I | TCNGA | 4 cut(s) | 52, 212, 337, 367 |
| Hpy188III | TCNNGA | 3 cut(s) | 96, 181, 1057 |
| Hpy8I | GTNNAC | 1 cut(s) | 923 |
| Hpy99I | CGWCG | 1 cut(s) | 77 |
| HpyAV | CCTTC | 1 cut(s) | 301 |
| HpyCH4IV | ACGT | 7 cut(s) | 75, 766, 802, 859, 880, 919, 963 |
| HpyCH4V | TGCA | 6 cut(s) | 167, 404, 635, 932, 1013, 1031 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 265, 655, 831 |
| HpyF3I | CTNAG | 2 cut(s) | 209, 460 |
| HpySE526I | ACGT | 7 cut(s) | 75, 766, 802, 859, 880, 919, 963 |
| Hsp92II | CATG | 9 cut(s) | 34, 62, 167, 226, 391, 788, 832, 1013, 1069 |
| HspAI | GCGC | 2 cut(s) | 257, 649 |
| Kzo9I | GATC | 1 cut(s) | 980 |
| LguI | GCTCTTC | 2 cut(s) | 258, 378 |
| LmnI | GCTCC | 1 cut(s) | 127 |
| LpnPI | CCDG | 5 cut(s) | 117, 144, 312, 489, 1042 |
| Lsp1109I | GCAGC | 2 cut(s) | 667, 1015 |
| LweI | GCATC | 3 cut(s) | 174, 226, 879 |
| MaeI | CTAG | 5 cut(s) | 15, 240, 260, 903, 1025 |
| MaeII | ACGT | 7 cut(s) | 75, 766, 802, 859, 880, 919, 963 |
| MaeIII | GTNAC | 3 cut(s) | 67, 773, 893 |
| MalI | GATC | 1 cut(s) | 982 |
| MboI | GATC | 1 cut(s) | 980 |
| MboII | GAAGA | 4 cut(s) | 275, 365, 431, 448 |
| MfeI | CAATTG | 1 cut(s) | 465 |
| MhlI | GDGCHC | 1 cut(s) | 698 |
| MluCI | AATT | 7 cut(s) | 114, 429, 465, 510, 580, 625, 1052 |
| MlyI | GAGTC | 4 cut(s) | 12, 32, 201, 433 |
| MmeI | TCCRAC | 2 cut(s) | 169, 360 |
| MroXI | GAANNNNTTC | 1 cut(s) | 372 |
| MseI | TTAA | 5 cut(s) | 342, 522, 534, 735, 1072 |
| MspR9I | CCNGG | 1 cut(s) | 132 |
| MunI | CAATTG | 1 cut(s) | 465 |
| MvaI | CCWGG | 1 cut(s) | 132 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 265, 655, 831 |
| NcoI | CCATGG | 1 cut(s) | 58 |
| NdeI | CATATG | 1 cut(s) | 195 |
| NdeII | GATC | 1 cut(s) | 980 |
| NlaIII | CATG | 9 cut(s) | 34, 62, 167, 226, 391, 788, 832, 1013, 1069 |
| NlaIV | GGNNCC | 3 cut(s) | 191, 604, 696 |
| NmeAIII | GCCGAG | 1 cut(s) | 860 |
| NspI | RCATGY | 4 cut(s) | 34, 167, 226, 1069 |
| PaeI | GCATGC | 1 cut(s) | 167 |
| PceI | AGGCCT | 1 cut(s) | 135 |
| PciI | ACATGT | 2 cut(s) | 222, 1065 |
| PciSI | GCTCTTC | 2 cut(s) | 258, 378 |
| PdmI | GAANNNNTTC | 1 cut(s) | 372 |
| Pfl23II | CGTACG | 1 cut(s) | 689 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 920 |
| PkrI | GCNGC | 2 cut(s) | 657, 1030 |
| PleI | GAGTC | 4 cut(s) | 12, 32, 201, 433 |
| PmaCI | CACGTG | 2 cut(s) | 767, 803 |
| PmlI | CACGTG | 2 cut(s) | 767, 803 |
| PpsI | GAGTC | 4 cut(s) | 12, 32, 201, 433 |
| Ppu21I | YACGTR | 2 cut(s) | 767, 803 |
| PscI | ACATGT | 2 cut(s) | 222, 1065 |
| PshAI | GACNNNNGTC | 1 cut(s) | 966 |
| PshBI | ATTAAT | 1 cut(s) | 534 |
| PsiI | TTATAA | 1 cut(s) | 630 |
| Psp6I | CCWGG | 1 cut(s) | 130 |
| PspCI | CACGTG | 2 cut(s) | 767, 803 |
| PspEI | GGTNACC | 1 cut(s) | 67 |
| PspGI | CCWGG | 1 cut(s) | 130 |
| PspLI | CGTACG | 1 cut(s) | 689 |
| PspN4I | GGNNCC | 3 cut(s) | 191, 604, 696 |
| PspOMI | GGGCCC | 1 cut(s) | 694 |
| PspPI | GGNCC | 4 cut(s) | 594, 694, 695, 832 |
| RsaI | GTAC | 3 cut(s) | 221, 691, 1018 |
| RsaNI | GTAC | 3 cut(s) | 220, 690, 1017 |
| SapI | GCTCTTC | 2 cut(s) | 258, 378 |
| SaqAI | TTAA | 5 cut(s) | 342, 522, 534, 735, 1072 |
| SatI | GCNGC | 2 cut(s) | 656, 1029 |
| Sau3AI | GATC | 1 cut(s) | 980 |
| Sau96I | GGNCC | 4 cut(s) | 594, 694, 695, 832 |
| ScaI | AGTACT | 1 cut(s) | 1018 |
| SchI | GAGTC | 4 cut(s) | 12, 32, 201, 433 |
| ScrFI | CCNGG | 1 cut(s) | 132 |
| SduI | GDGCHC | 1 cut(s) | 698 |
| SfaNI | GCATC | 3 cut(s) | 174, 226, 879 |
| SphI | GCATGC | 1 cut(s) | 167 |
| Sse9I | AATT | 7 cut(s) | 114, 429, 465, 510, 580, 625, 1052 |
| SseBI | AGGCCT | 1 cut(s) | 135 |
| SsiI | CCGC | 4 cut(s) | 187, 727, 740, 978 |
| SspI | AATATT | 1 cut(s) | 105 |
| SspMI | CTAG | 5 cut(s) | 15, 240, 260, 903, 1025 |
| StuI | AGGCCT | 1 cut(s) | 135 |
| StyD4I | CCNGG | 1 cut(s) | 130 |
| StyI | CCWWGG | 2 cut(s) | 58, 902 |
| TaiI | ACGT | 7 cut(s) | 78, 769, 805, 862, 883, 922, 966 |
| TaqI | TCGA | 3 cut(s) | 5, 21, 987 |
| TasI | AATT | 7 cut(s) | 114, 429, 465, 510, 580, 625, 1052 |
| TatI | WGTACW | 2 cut(s) | 219, 1016 |
| Tru1I | TTAA | 5 cut(s) | 342, 522, 534, 735, 1072 |
| Tru9I | TTAA | 5 cut(s) | 342, 522, 534, 735, 1072 |
| TscAI | CASTG | 1 cut(s) | 320 |
| TseI | GCWGC | 2 cut(s) | 655, 1028 |
| TspDTI | ATGAA | 2 cut(s) | 24, 956 |
| TspGWI | ACGGA | 2 cut(s) | 163, 605 |
| TspRI | CASTG | 1 cut(s) | 320 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 920 |
| VspI | ATTAAT | 1 cut(s) | 534 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 129 |
| XceI | RCATGY | 4 cut(s) | 34, 167, 226, 1069 |
| XmaJI | CCTAGG | 1 cut(s) | 902 |
| XmnI | GAANNNNTTC | 1 cut(s) | 372 |
| XspI | CTAG | 5 cut(s) | 15, 240, 260, 903, 1025 |
| ZrmI | AGTACT | 1 cut(s) | 1018 |