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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 618 |
| AccB1I | GGYRCC | 1 cut(s) | 458 |
| AccII | CGCG | 1 cut(s) | 558 |
| AccIII | TCCGGA | 1 cut(s) | 538 |
| AciI | CCGC | 1 cut(s) | 250 |
| AclWI | GGATC | 3 cut(s) | 97, 109, 110 |
| AcsI | RAATTY | 1 cut(s) | 317 |
| AfaI | GTAC | 3 cut(s) | 112, 273, 667 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 64, 640 |
| AflII | CTTAAG | 1 cut(s) | 89 |
| AgsI | TTSAA | 3 cut(s) | 167, 265, 446 |
| AjiI | CACGTC | 1 cut(s) | 238 |
| AluBI | AGCT | 6 cut(s) | 24, 155, 179, 200, 451, 473 |
| AluI | AGCT | 6 cut(s) | 24, 155, 179, 200, 451, 473 |
| Alw21I | GWGCWC | 1 cut(s) | 243 |
| Alw26I | GTCTC | 2 cut(s) | 32, 385 |
| AlwI | GGATC | 3 cut(s) | 97, 109, 110 |
| Aor13HI | TCCGGA | 1 cut(s) | 538 |
| ApeKI | GCWGC | 2 cut(s) | 155, 158 |
| ApoI | RAATTY | 1 cut(s) | 317 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 294 |
| AspLEI | GCGC | 3 cut(s) | 50, 81, 560 |
| AspS9I | GGNCC | 1 cut(s) | 620 |
| AvaII | GGWCC | 1 cut(s) | 620 |
| BamHI | GGATCC | 1 cut(s) | 102 |
| BanI | GGYRCC | 1 cut(s) | 458 |
| Bbv12I | GWGCWC | 1 cut(s) | 243 |
| BbvI | GCAGC | 2 cut(s) | 142, 145 |
| BccI | CCATC | 2 cut(s) | 92, 307 |
| BceAI | ACGGC | 1 cut(s) | 191 |
| BciVI | GTATCC | 1 cut(s) | 47 |
| BcoDI | GTCTC | 2 cut(s) | 32, 385 |
| BfaI | CTAG | 2 cut(s) | 35, 513 |
| BfrI | CTTAAG | 1 cut(s) | 89 |
| BfuI | GTATCC | 1 cut(s) | 47 |
| BisI | GCNGC | 2 cut(s) | 156, 159 |
| BlsI | GCNGC | 2 cut(s) | 157, 160 |
| Bme18I | GGWCC | 1 cut(s) | 620 |
| BmgBI | CACGTC | 1 cut(s) | 238 |
| BmgT120I | GGNCC | 1 cut(s) | 620 |
| BmiI | GGNNCC | 3 cut(s) | 104, 460, 526 |
| BmsI | GCATC | 2 cut(s) | 441, 563 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 13, 45 |
| BsaBI | GATNNNNATC | 1 cut(s) | 350 |
| BsaJI | CCNNGG | 3 cut(s) | 519, 564, 676 |
| BsaWI | WCCGGW | 1 cut(s) | 538 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 64, 640 |
| Bse8I | GATNNNNATC | 1 cut(s) | 350 |
| BseAI | TCCGGA | 1 cut(s) | 538 |
| BseDI | CCNNGG | 3 cut(s) | 519, 564, 676 |
| BseGI | GGATG | 2 cut(s) | 139, 578 |
| BseJI | GATNNNNATC | 1 cut(s) | 350 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 64, 640 |
| BseRI | GAGGAG | 1 cut(s) | 135 |
| BseXI | GCAGC | 2 cut(s) | 142, 145 |
| Bsh1236I | CGCG | 1 cut(s) | 558 |
| BshNI | GGYRCC | 1 cut(s) | 458 |
| BsiHKAI | GWGCWC | 1 cut(s) | 243 |
| BsiSI | CCGG | 1 cut(s) | 539 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 64, 640 |
| BsmAI | GTCTC | 2 cut(s) | 32, 385 |
| BsmBI | CGTCTC | 1 cut(s) | 385 |
| Bsp1286I | GDGCHC | 1 cut(s) | 243 |
| Bsp13I | TCCGGA | 1 cut(s) | 538 |
| Bsp143I | GATC | 3 cut(s) | 102, 114, 351 |
| BspACI | CCGC | 1 cut(s) | 250 |
| BspEI | TCCGGA | 1 cut(s) | 538 |
| BspFNI | CGCG | 1 cut(s) | 558 |
| BspHI | TCATGA | 1 cut(s) | 216 |
| BspLI | GGNNCC | 3 cut(s) | 104, 460, 526 |
| BspPI | GGATC | 3 cut(s) | 97, 109, 110 |
| BspT107I | GGYRCC | 1 cut(s) | 458 |
| BspTI | CTTAAG | 1 cut(s) | 89 |
| BssECI | CCNNGG | 3 cut(s) | 519, 564, 676 |
| BssMI | GATC | 3 cut(s) | 102, 114, 351 |
| BssT1I | CCWWGG | 1 cut(s) | 564 |
| Bst4CI | ACNGT | 1 cut(s) | 677 |
| BstAFI | CTTAAG | 1 cut(s) | 89 |
| BstDEI | CTNAG | 3 cut(s) | 107, 180, 591 |
| BstDSI | CCRYGG | 2 cut(s) | 519, 676 |
| BstF5I | GGATG | 2 cut(s) | 139, 578 |
| BstFNI | CGCG | 1 cut(s) | 558 |
| BstHHI | GCGC | 3 cut(s) | 50, 81, 560 |
| BstKTI | GATC | 3 cut(s) | 105, 117, 354 |
| BstMAI | GTCTC | 2 cut(s) | 32, 385 |
| BstMBI | GATC | 3 cut(s) | 102, 114, 351 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 167, 176 |
| BstNSI | RCATGY | 1 cut(s) | 79 |
| BstUI | CGCG | 1 cut(s) | 558 |
| BstV1I | GCAGC | 2 cut(s) | 142, 145 |
| BstX2I | RGATCY | 1 cut(s) | 102 |
| BstYI | RGATCY | 1 cut(s) | 102 |
| BsuI | GTATCC | 1 cut(s) | 47 |
| BtgI | CCRYGG | 2 cut(s) | 519, 676 |
| BtrI | CACGTC | 1 cut(s) | 238 |
| BtsCI | GGATG | 2 cut(s) | 139, 578 |
| BtsIMutI | CAGTG | 1 cut(s) | 336 |
| CciI | TCATGA | 1 cut(s) | 216 |
| CfoI | GCGC | 3 cut(s) | 50, 81, 560 |
| Cfr13I | GGNCC | 1 cut(s) | 620 |
| CseI | GACGC | 1 cut(s) | 438 |
| Csp6I | GTAC | 3 cut(s) | 111, 272, 666 |
| CviAII | CATG | 4 cut(s) | 76, 217, 229, 463 |
| CviJI | RGCY | 9 cut(s) | 24, 95, 124, 155, 179, 200, 206, 451, 473 |
| CviKI_1 | RGCY | 9 cut(s) | 24, 95, 124, 155, 179, 200, 206, 451, 473 |
| CviQI | GTAC | 3 cut(s) | 111, 272, 666 |
| DdeI | CTNAG | 3 cut(s) | 107, 180, 591 |
| DpnI | GATC | 3 cut(s) | 104, 116, 353 |
| DpnII | GATC | 3 cut(s) | 102, 114, 351 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 618 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 618 |
| Eco130I | CCWWGG | 1 cut(s) | 564 |
| Eco47I | GGWCC | 1 cut(s) | 620 |
| EcoRI | GAATTC | 1 cut(s) | 317 |
| EcoT14I | CCWWGG | 1 cut(s) | 564 |
| ErhI | CCWWGG | 1 cut(s) | 564 |
| Esp3I | CGTCTC | 1 cut(s) | 385 |
| FaeI | CATG | 4 cut(s) | 79, 220, 232, 466 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 8, 40 |
| FatI | CATG | 4 cut(s) | 75, 216, 228, 462 |
| Fnu4HI | GCNGC | 2 cut(s) | 156, 159 |
| FokI | GGATG | 2 cut(s) | 146, 585 |
| Fsp4HI | GCNGC | 2 cut(s) | 156, 159 |
| FspBI | CTAG | 2 cut(s) | 35, 513 |
| GlaI | GCGC | 3 cut(s) | 49, 80, 559 |
| GluI | GCNGC | 2 cut(s) | 156, 159 |
| HapII | CCGG | 1 cut(s) | 539 |
| HgaI | GACGC | 1 cut(s) | 438 |
| HhaI | GCGC | 3 cut(s) | 50, 81, 560 |
| Hin1II | CATG | 4 cut(s) | 79, 220, 232, 466 |
| Hin6I | GCGC | 3 cut(s) | 48, 79, 558 |
| HinP1I | GCGC | 3 cut(s) | 48, 79, 558 |
| HinfI | GANTC | 1 cut(s) | 542 |
| HpaII | CCGG | 1 cut(s) | 539 |
| Hpy166II | GTNNAC | 2 cut(s) | 326, 668 |
| Hpy188I | TCNGA | 2 cut(s) | 289, 411 |
| Hpy188III | TCNNGA | 7 cut(s) | 131, 217, 355, 446, 513, 539, 609 |
| Hpy8I | GTNNAC | 2 cut(s) | 326, 668 |
| Hpy99I | CGWCG | 1 cut(s) | 432 |
| HpyAV | CCTTC | 2 cut(s) | 382, 638 |
| HpyCH4III | ACNGT | 1 cut(s) | 677 |
| HpyCH4IV | ACGT | 3 cut(s) | 237, 468, 613 |
| HpyCH4V | TGCA | 2 cut(s) | 386, 576 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 167, 176 |
| HpyF3I | CTNAG | 3 cut(s) | 107, 180, 591 |
| HpySE526I | ACGT | 3 cut(s) | 237, 468, 613 |
| Hsp92II | CATG | 4 cut(s) | 79, 220, 232, 466 |
| HspAI | GCGC | 3 cut(s) | 48, 79, 558 |
| Kpn2I | TCCGGA | 1 cut(s) | 538 |
| Kzo9I | GATC | 3 cut(s) | 102, 114, 351 |
| LmnI | GCTCC | 2 cut(s) | 246, 580 |
| LpnPI | CCDG | 7 cut(s) | 23, 30, 36, 116, 552, 594, 603 |
| Lsp1109I | GCAGC | 2 cut(s) | 142, 145 |
| LweI | GCATC | 2 cut(s) | 441, 563 |
| MaeI | CTAG | 2 cut(s) | 35, 513 |
| MaeII | ACGT | 3 cut(s) | 237, 468, 613 |
| MaeIII | GTNAC | 2 cut(s) | 5, 71 |
| MalI | GATC | 3 cut(s) | 104, 116, 353 |
| MboI | GATC | 3 cut(s) | 102, 114, 351 |
| MboII | GAAGA | 1 cut(s) | 511 |
| MflI | RGATCY | 1 cut(s) | 102 |
| MhlI | GDGCHC | 1 cut(s) | 243 |
| MluCI | AATT | 5 cut(s) | 283, 317, 453, 534, 547 |
| MlyI | GAGTC | 1 cut(s) | 551 |
| MnlI | CCTC | 6 cut(s) | 156, 257, 563, 571, 634, 674 |
| MroI | TCCGGA | 1 cut(s) | 538 |
| MroXI | GAANNNNTTC | 1 cut(s) | 294 |
| MseI | TTAA | 1 cut(s) | 90 |
| MslI | CAYNNNNRTG | 3 cut(s) | 215, 231, 494 |
| MspCI | CTTAAG | 1 cut(s) | 89 |
| MspI | CCGG | 1 cut(s) | 539 |
| MvnI | CGCG | 1 cut(s) | 558 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 167, 176 |
| NdeII | GATC | 3 cut(s) | 102, 114, 351 |
| NlaIII | CATG | 4 cut(s) | 79, 220, 232, 466 |
| NlaIV | GGNNCC | 3 cut(s) | 104, 460, 526 |
| NmuCI | GTSAC | 1 cut(s) | 71 |
| NspI | RCATGY | 1 cut(s) | 79 |
| PagI | TCATGA | 1 cut(s) | 216 |
| PdmI | GAANNNNTTC | 1 cut(s) | 294 |
| PkrI | GCNGC | 2 cut(s) | 157, 160 |
| PleI | GAGTC | 1 cut(s) | 550 |
| PpsI | GAGTC | 1 cut(s) | 550 |
| PspN4I | GGNNCC | 3 cut(s) | 104, 460, 526 |
| PspPI | GGNCC | 1 cut(s) | 620 |
| PsuI | RGATCY | 1 cut(s) | 102 |
| RsaI | GTAC | 3 cut(s) | 112, 273, 667 |
| RsaNI | GTAC | 3 cut(s) | 111, 272, 666 |
| RseI | CAYNNNNRTG | 3 cut(s) | 215, 231, 494 |
| SaqAI | TTAA | 1 cut(s) | 90 |
| SatI | GCNGC | 2 cut(s) | 156, 159 |
| Sau3AI | GATC | 3 cut(s) | 102, 114, 351 |
| Sau96I | GGNCC | 1 cut(s) | 620 |
| SchI | GAGTC | 1 cut(s) | 551 |
| SduI | GDGCHC | 1 cut(s) | 243 |
| SfaNI | GCATC | 2 cut(s) | 441, 563 |
| SinI | GGWCC | 1 cut(s) | 620 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 215, 231, 494 |
| SmlI | CTYRAG | 1 cut(s) | 89 |
| SmoI | CTYRAG | 1 cut(s) | 89 |
| Sse9I | AATT | 5 cut(s) | 283, 317, 453, 534, 547 |
| SsiI | CCGC | 1 cut(s) | 250 |
| SspMI | CTAG | 2 cut(s) | 35, 513 |
| StyI | CCWWGG | 1 cut(s) | 564 |
| TaaI | ACNGT | 1 cut(s) | 677 |
| TaiI | ACGT | 3 cut(s) | 240, 471, 616 |
| TaqI | TCGA | 2 cut(s) | 354, 427 |
| TasI | AATT | 5 cut(s) | 283, 317, 453, 534, 547 |
| TatI | WGTACW | 1 cut(s) | 271 |
| Tru1I | TTAA | 1 cut(s) | 90 |
| Tru9I | TTAA | 1 cut(s) | 90 |
| TscAI | CASTG | 1 cut(s) | 343 |
| TseFI | GTSAC | 1 cut(s) | 71 |
| TseI | GCWGC | 2 cut(s) | 155, 158 |
| Tsp45I | GTSAC | 1 cut(s) | 71 |
| TspDTI | ATGAA | 4 cut(s) | 206, 210, 245, 479 |
| TspRI | CASTG | 1 cut(s) | 343 |
| Vha464I | CTTAAG | 1 cut(s) | 89 |
| VpaK11BI | GGWCC | 1 cut(s) | 620 |
| XapI | RAATTY | 1 cut(s) | 317 |
| XbaI | TCTAGA | 1 cut(s) | 512 |
| XceI | RCATGY | 1 cut(s) | 79 |
| XmnI | GAANNNNTTC | 1 cut(s) | 294 |
| XspI | CTAG | 2 cut(s) | 35, 513 |