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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 729 |
| AciI | CCGC | 3 cut(s) | 79, 361, 763 |
| AclWI | GGATC | 2 cut(s) | 551, 621 |
| AcoI | YGGCCR | 1 cut(s) | 313 |
| AcsI | RAATTY | 1 cut(s) | 428 |
| AfaI | GTAC | 1 cut(s) | 248 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 750 |
| AgsI | TTSAA | 2 cut(s) | 376, 587 |
| AjiI | CACGTC | 1 cut(s) | 136 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 288, 320 |
| AluBI | AGCT | 4 cut(s) | 155, 161, 572, 643 |
| AluI | AGCT | 4 cut(s) | 155, 161, 572, 643 |
| Alw26I | GTCTC | 2 cut(s) | 292, 496 |
| AlwI | GGATC | 2 cut(s) | 551, 621 |
| Ama87I | CYCGRG | 1 cut(s) | 119 |
| AoxI | GGCC | 2 cut(s) | 93, 313 |
| ApeKI | GCWGC | 1 cut(s) | 179 |
| ApoI | RAATTY | 1 cut(s) | 428 |
| AspA2I | CCTAGG | 1 cut(s) | 125 |
| AspS9I | GGNCC | 1 cut(s) | 731 |
| AvaI | CYCGRG | 1 cut(s) | 119 |
| AvaII | GGWCC | 1 cut(s) | 731 |
| AvrII | CCTAGG | 1 cut(s) | 125 |
| BbsI | GAAGAC | 3 cut(s) | 273, 476, 762 |
| BbvI | GCAGC | 1 cut(s) | 191 |
| BccI | CCATC | 4 cut(s) | 92, 215, 342, 496 |
| BceAI | ACGGC | 2 cut(s) | 300, 328 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 515, 549 |
| BciVI | GTATCC | 1 cut(s) | 706 |
| BcoDI | GTCTC | 2 cut(s) | 292, 496 |
| BfaI | CTAG | 2 cut(s) | 126, 338 |
| BfmI | CTRYAG | 1 cut(s) | 534 |
| BfuI | GTATCC | 1 cut(s) | 706 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 188 |
| BisI | GCNGC | 1 cut(s) | 180 |
| BlnI | CCTAGG | 1 cut(s) | 125 |
| BlsI | GCNGC | 1 cut(s) | 181 |
| Bme18I | GGWCC | 1 cut(s) | 731 |
| BmeT110I | CYCGRG | 1 cut(s) | 119 |
| BmgBI | CACGTC | 1 cut(s) | 136 |
| BmgT120I | GGNCC | 1 cut(s) | 731 |
| BpiI | GAAGAC | 3 cut(s) | 273, 476, 762 |
| BpmI | CTGGAG | 1 cut(s) | 227 |
| BpuEI | CTTGAG | 2 cut(s) | 74, 141 |
| Bsa29I | ATCGAT | 1 cut(s) | 525 |
| BsaI | GGTCTC | 1 cut(s) | 292 |
| BsaJI | CCNNGG | 1 cut(s) | 125 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 750 |
| Bse1I | ACTGG | 2 cut(s) | 49, 244 |
| BseCI | ATCGAT | 1 cut(s) | 525 |
| BseDI | CCNNGG | 1 cut(s) | 125 |
| BseGI | GGATG | 3 cut(s) | 210, 238, 600 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 750 |
| BseNI | ACTGG | 2 cut(s) | 49, 244 |
| BseX3I | CGGCCG | 1 cut(s) | 313 |
| BseXI | GCAGC | 1 cut(s) | 191 |
| Bsh1285I | CGRYCG | 1 cut(s) | 316 |
| BshFI | GGCC | 2 cut(s) | 95, 315 |
| BshVI | ATCGAT | 1 cut(s) | 525 |
| BsiEI | CGRYCG | 1 cut(s) | 316 |
| BsiHKCI | CYCGRG | 1 cut(s) | 119 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 750 |
| BsmAI | GTCTC | 2 cut(s) | 292, 496 |
| BsnI | GGCC | 2 cut(s) | 95, 315 |
| Bso31I | GGTCTC | 1 cut(s) | 292 |
| BsoBI | CYCGRG | 1 cut(s) | 119 |
| Bsp143I | GATC | 3 cut(s) | 444, 543, 626 |
| BspACI | CCGC | 3 cut(s) | 79, 361, 763 |
| BspANI | GGCC | 2 cut(s) | 95, 315 |
| BspDI | ATCGAT | 1 cut(s) | 525 |
| BspHI | TCATGA | 2 cut(s) | 70, 556 |
| BspMAI | CTGCAG | 1 cut(s) | 538 |
| BspPI | GGATC | 2 cut(s) | 551, 621 |
| BspTNI | GGTCTC | 1 cut(s) | 292 |
| BsrI | ACTGG | 2 cut(s) | 49, 244 |
| BssECI | CCNNGG | 1 cut(s) | 125 |
| BssMI | GATC | 3 cut(s) | 444, 543, 626 |
| BssT1I | CCWWGG | 1 cut(s) | 125 |
| Bst4CI | ACNGT | 1 cut(s) | 145 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 136 |
| BstC8I | GCNNGC | 1 cut(s) | 153 |
| BstDEI | CTNAG | 4 cut(s) | 184, 510, 675, 707 |
| BstF5I | GGATG | 3 cut(s) | 210, 238, 600 |
| BstKTI | GATC | 3 cut(s) | 447, 546, 629 |
| BstMAI | GTCTC | 2 cut(s) | 292, 496 |
| BstMBI | GATC | 3 cut(s) | 444, 543, 626 |
| BstMCI | CGRYCG | 1 cut(s) | 316 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 136, 188, 197 |
| BstSFI | CTRYAG | 1 cut(s) | 534 |
| BstV1I | GCAGC | 1 cut(s) | 191 |
| BstV2I | GAAGAC | 3 cut(s) | 273, 476, 762 |
| BstX2I | RGATCY | 1 cut(s) | 626 |
| BstYI | RGATCY | 1 cut(s) | 626 |
| BstZI | CGGCCG | 1 cut(s) | 313 |
| Bsu15I | ATCGAT | 1 cut(s) | 525 |
| BsuI | GTATCC | 1 cut(s) | 706 |
| BsuRI | GGCC | 2 cut(s) | 95, 315 |
| BsuTUI | ATCGAT | 1 cut(s) | 525 |
| BtgZI | GCGATG | 1 cut(s) | 470 |
| BtrI | CACGTC | 1 cut(s) | 136 |
| BtsCI | GGATG | 3 cut(s) | 210, 238, 600 |
| Cac8I | GCNNGC | 1 cut(s) | 153 |
| CciI | TCATGA | 2 cut(s) | 70, 556 |
| Cfr13I | GGNCC | 1 cut(s) | 731 |
| ClaI | ATCGAT | 1 cut(s) | 525 |
| Csp6I | GTAC | 1 cut(s) | 247 |
| CviAII | CATG | 3 cut(s) | 71, 557, 593 |
| CviQI | GTAC | 1 cut(s) | 247 |
| DdeI | CTNAG | 4 cut(s) | 184, 510, 675, 707 |
| DpnI | GATC | 3 cut(s) | 446, 545, 628 |
| DpnII | GATC | 3 cut(s) | 444, 543, 626 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 729 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 729 |
| EaeI | YGGCCR | 1 cut(s) | 313 |
| EagI | CGGCCG | 1 cut(s) | 313 |
| EciI | GGCGGA | 1 cut(s) | 68 |
| EclXI | CGGCCG | 1 cut(s) | 313 |
| Eco130I | CCWWGG | 1 cut(s) | 125 |
| Eco31I | GGTCTC | 1 cut(s) | 292 |
| Eco32I | GATATC | 1 cut(s) | 56 |
| Eco47I | GGWCC | 1 cut(s) | 731 |
| Eco52I | CGGCCG | 1 cut(s) | 313 |
| Eco88I | CYCGRG | 1 cut(s) | 119 |
| EcoRI | GAATTC | 1 cut(s) | 428 |
| EcoRV | GATATC | 1 cut(s) | 56 |
| EcoT14I | CCWWGG | 1 cut(s) | 125 |
| ErhI | CCWWGG | 1 cut(s) | 125 |
| FaeI | CATG | 3 cut(s) | 74, 560, 596 |
| FatI | CATG | 3 cut(s) | 70, 556, 592 |
| FauNDI | CATATG | 2 cut(s) | 111, 228 |
| Fnu4HI | GCNGC | 1 cut(s) | 180 |
| FokI | GGATG | 3 cut(s) | 197, 245, 587 |
| Fsp4HI | GCNGC | 1 cut(s) | 180 |
| FspBI | CTAG | 2 cut(s) | 126, 338 |
| GluI | GCNGC | 1 cut(s) | 180 |
| GsuI | CTGGAG | 1 cut(s) | 227 |
| HaeIII | GGCC | 2 cut(s) | 95, 315 |
| Hin1II | CATG | 3 cut(s) | 74, 560, 596 |
| HindIII | AAGCTT | 1 cut(s) | 159 |
| HinfI | GANTC | 8 cut(s) | 102, 115, 220, 236, 320, 472, 522, 653 |
| Hpy188I | TCNGA | 1 cut(s) | 400 |
| Hpy188III | TCNNGA | 6 cut(s) | 51, 71, 119, 386, 557, 720 |
| HpyAV | CCTTC | 1 cut(s) | 493 |
| HpyCH4III | ACNGT | 1 cut(s) | 145 |
| HpyCH4IV | ACGT | 2 cut(s) | 135, 724 |
| HpyCH4V | TGCA | 3 cut(s) | 411, 497, 536 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 136, 188, 197 |
| HpyF3I | CTNAG | 4 cut(s) | 184, 510, 675, 707 |
| HpySE526I | ACGT | 2 cut(s) | 135, 724 |
| Hsp92II | CATG | 3 cut(s) | 74, 560, 596 |
| Kzo9I | GATC | 3 cut(s) | 444, 543, 626 |
| LmnI | GCTCC | 3 cut(s) | 34, 246, 569 |
| Lsp1109I | GCAGC | 1 cut(s) | 191 |
| MaeI | CTAG | 2 cut(s) | 126, 338 |
| MaeII | ACGT | 2 cut(s) | 135, 724 |
| MaeIII | GTNAC | 4 cut(s) | 5, 317, 529, 665 |
| MalI | GATC | 3 cut(s) | 446, 545, 628 |
| MboI | GATC | 3 cut(s) | 444, 543, 626 |
| MboII | GAAGA | 7 cut(s) | 179, 275, 278, 308, 481, 622, 767 |
| MflI | RGATCY | 1 cut(s) | 626 |
| MluCI | AATT | 5 cut(s) | 17, 405, 428, 619, 658 |
| MlyI | GAGTC | 3 cut(s) | 214, 314, 466 |
| MmeI | TCCRAC | 1 cut(s) | 547 |
| MnlI | CCTC | 3 cut(s) | 181, 368, 754 |
| MseI | TTAA | 3 cut(s) | 414, 422, 702 |
| MslI | CAYNNNNRTG | 3 cut(s) | 215, 231, 605 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 136, 188, 197 |
| NdeI | CATATG | 2 cut(s) | 111, 228 |
| NdeII | GATC | 3 cut(s) | 444, 543, 626 |
| NlaIII | CATG | 3 cut(s) | 74, 560, 596 |
| NmuCI | GTSAC | 2 cut(s) | 317, 665 |
| PaeR7I | CTCGAG | 1 cut(s) | 119 |
| PagI | TCATGA | 2 cut(s) | 70, 556 |
| PfeI | GAWTC | 5 cut(s) | 102, 115, 236, 522, 653 |
| PkrI | GCNGC | 1 cut(s) | 181 |
| PleI | GAGTC | 3 cut(s) | 214, 314, 466 |
| PpsI | GAGTC | 3 cut(s) | 214, 314, 466 |
| PspPI | GGNCC | 1 cut(s) | 731 |
| PstI | CTGCAG | 1 cut(s) | 538 |
| PsuI | RGATCY | 1 cut(s) | 626 |
| RsaI | GTAC | 1 cut(s) | 248 |
| RsaNI | GTAC | 1 cut(s) | 247 |
| RseI | CAYNNNNRTG | 3 cut(s) | 215, 231, 605 |
| SaqAI | TTAA | 3 cut(s) | 414, 422, 702 |
| SatI | GCNGC | 1 cut(s) | 180 |
| Sau3AI | GATC | 3 cut(s) | 444, 543, 626 |
| Sau96I | GGNCC | 1 cut(s) | 731 |
| SchI | GAGTC | 3 cut(s) | 214, 314, 466 |
| SfcI | CTRYAG | 1 cut(s) | 534 |
| Sfr274I | CTCGAG | 1 cut(s) | 119 |
| SinI | GGWCC | 1 cut(s) | 731 |
| SlaI | CTCGAG | 1 cut(s) | 119 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 215, 231, 605 |
| SmlI | CTYRAG | 3 cut(s) | 89, 119, 156 |
| SmoI | CTYRAG | 3 cut(s) | 89, 119, 156 |
| Sse9I | AATT | 5 cut(s) | 17, 405, 428, 619, 658 |
| SsiI | CCGC | 3 cut(s) | 79, 361, 763 |
| SspMI | CTAG | 2 cut(s) | 126, 338 |
| StyI | CCWWGG | 1 cut(s) | 125 |
| TaaI | ACNGT | 1 cut(s) | 145 |
| TaiI | ACGT | 2 cut(s) | 138, 727 |
| TaqI | TCGA | 4 cut(s) | 120, 294, 520, 525 |
| TasI | AATT | 5 cut(s) | 17, 405, 428, 619, 658 |
| TfiI | GAWTC | 5 cut(s) | 102, 115, 236, 522, 653 |
| Tru1I | TTAA | 3 cut(s) | 414, 422, 702 |
| Tru9I | TTAA | 3 cut(s) | 414, 422, 702 |
| TseFI | GTSAC | 2 cut(s) | 317, 665 |
| TseI | GCWGC | 1 cut(s) | 179 |
| Tsp45I | GTSAC | 2 cut(s) | 317, 665 |
| TspDTI | ATGAA | 6 cut(s) | 59, 98, 272, 276, 545, 590 |
| TspGWI | ACGGA | 2 cut(s) | 556, 619 |
| VpaK11BI | GGWCC | 1 cut(s) | 731 |
| XapI | RAATTY | 1 cut(s) | 428 |
| XhoI | CTCGAG | 1 cut(s) | 119 |
| XmaJI | CCTAGG | 1 cut(s) | 125 |
| XspI | CTAG | 2 cut(s) | 126, 338 |