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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 729 |
| AccB1I | GGYRCC | 2 cut(s) | 851, 932 |
| AccBSI | CCGCTC | 1 cut(s) | 241 |
| AccI | GTMKAC | 1 cut(s) | 782 |
| AccII | CGCG | 1 cut(s) | 669 |
| AciI | CCGC | 5 cut(s) | 79, 239, 361, 814, 855 |
| AclWI | GGATC | 4 cut(s) | 230, 293, 551, 621 |
| AcsI | RAATTY | 3 cut(s) | 428, 653, 1000 |
| AcyI | GRCGYC | 1 cut(s) | 903 |
| AfaI | GTAC | 1 cut(s) | 248 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 877 |
| AflII | CTTAAG | 1 cut(s) | 809 |
| AflIII | ACRYGT | 2 cut(s) | 135, 832 |
| AgsI | TTSAA | 4 cut(s) | 428, 569, 658, 968 |
| AjiI | CACGTC | 1 cut(s) | 136 |
| AjnI | CCWGG | 2 cut(s) | 129, 846 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 288, 320 |
| AluBI | AGCT | 4 cut(s) | 155, 161, 562, 572 |
| AluI | AGCT | 4 cut(s) | 155, 161, 562, 572 |
| Alw21I | GWGCWC | 1 cut(s) | 564 |
| Alw26I | GTCTC | 3 cut(s) | 362, 496, 841 |
| AlwI | GGATC | 4 cut(s) | 230, 293, 551, 621 |
| Ama87I | CYCGRG | 1 cut(s) | 119 |
| AoxI | GGCC | 1 cut(s) | 989 |
| ApeKI | GCWGC | 1 cut(s) | 947 |
| ApoI | RAATTY | 3 cut(s) | 428, 653, 1000 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 405 |
| AspA2I | CCTAGG | 2 cut(s) | 875, 937 |
| AspLEI | GCGC | 1 cut(s) | 671 |
| AspS9I | GGNCC | 2 cut(s) | 731, 990 |
| AsuHPI | GGTGA | 5 cut(s) | 753, 836, 938, 946, 953 |
| AvaI | CYCGRG | 1 cut(s) | 119 |
| AvaII | GGWCC | 1 cut(s) | 731 |
| AvrII | CCTAGG | 2 cut(s) | 875, 937 |
| AxyI | CCTNAGG | 1 cut(s) | 707 |
| BaeGI | GKGCMC | 2 cut(s) | 854, 937 |
| BanI | GGYRCC | 2 cut(s) | 851, 932 |
| BanII | GRGCYC | 2 cut(s) | 564, 883 |
| BauI | CACGAG | 1 cut(s) | 882 |
| BbsI | GAAGAC | 2 cut(s) | 273, 476 |
| Bbv12I | GWGCWC | 1 cut(s) | 564 |
| BbvI | GCAGC | 1 cut(s) | 934 |
| BccI | CCATC | 8 cut(s) | 92, 215, 342, 496, 869, 905, 923, 927 |
| BciT130I | CCWGG | 2 cut(s) | 131, 848 |
| BciVI | GTATCC | 1 cut(s) | 706 |
| BcoDI | GTCTC | 3 cut(s) | 362, 496, 841 |
| BfaI | CTAG | 4 cut(s) | 107, 338, 876, 938 |
| BfmI | CTRYAG | 1 cut(s) | 534 |
| BfrI | CTTAAG | 1 cut(s) | 809 |
| BfuI | GTATCC | 1 cut(s) | 706 |
| BisI | GCNGC | 1 cut(s) | 948 |
| BlnI | CCTAGG | 2 cut(s) | 875, 937 |
| BlsI | GCNGC | 1 cut(s) | 949 |
| Bme1390I | CCNGG | 2 cut(s) | 131, 848 |
| Bme18I | GGWCC | 1 cut(s) | 731 |
| BmeT110I | CYCGRG | 1 cut(s) | 119 |
| BmgBI | CACGTC | 1 cut(s) | 136 |
| BmgT120I | GGNCC | 2 cut(s) | 731, 990 |
| BmiI | GGNNCC | 3 cut(s) | 686, 853, 934 |
| BmrFI | CCNGG | 2 cut(s) | 131, 848 |
| BmsI | GCATC | 3 cut(s) | 94, 924, 934 |
| BpiI | GAAGAC | 2 cut(s) | 273, 476 |
| BpmI | CTGGAG | 1 cut(s) | 227 |
| Bpu10I | CCTNAGC | 1 cut(s) | 986 |
| BpuEI | CTTGAG | 2 cut(s) | 74, 141 |
| BsaHI | GRCGYC | 1 cut(s) | 903 |
| BsaJI | CCNNGG | 5 cut(s) | 630, 847, 875, 906, 937 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 877 |
| Bse1I | ACTGG | 2 cut(s) | 65, 244 |
| Bse21I | CCTNAGG | 1 cut(s) | 707 |
| BseBI | CCWGG | 2 cut(s) | 131, 848 |
| BseDI | CCNNGG | 5 cut(s) | 630, 847, 875, 906, 937 |
| BseGI | GGATG | 6 cut(s) | 210, 238, 600, 861, 915, 916 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 877 |
| BseMII | CTCAG | 2 cut(s) | 44, 1000 |
| BseNI | ACTGG | 2 cut(s) | 65, 244 |
| BseSI | GKGCMC | 2 cut(s) | 854, 937 |
| BseXI | GCAGC | 1 cut(s) | 934 |
| BsgI | GTGCAG | 1 cut(s) | 906 |
| Bsh1236I | CGCG | 1 cut(s) | 669 |
| BshFI | GGCC | 1 cut(s) | 991 |
| BshNI | GGYRCC | 2 cut(s) | 851, 932 |
| BsiHKAI | GWGCWC | 1 cut(s) | 564 |
| BsiHKCI | CYCGRG | 1 cut(s) | 119 |
| BslFI | GGGAC | 1 cut(s) | 875 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 877 |
| BsmAI | GTCTC | 3 cut(s) | 362, 496, 841 |
| BsmBI | CGTCTC | 1 cut(s) | 496 |
| BsmFI | GGGAC | 1 cut(s) | 875 |
| BsnI | GGCC | 1 cut(s) | 991 |
| BsoBI | CYCGRG | 1 cut(s) | 119 |
| Bsp1286I | GDGCHC | 4 cut(s) | 564, 854, 883, 937 |
| Bsp143I | GATC | 5 cut(s) | 235, 285, 444, 543, 626 |
| Bsp19I | CCATGG | 2 cut(s) | 630, 906 |
| BspACI | CCGC | 5 cut(s) | 79, 239, 361, 814, 855 |
| BspANI | GGCC | 1 cut(s) | 991 |
| BspCNI | CTCAG | 2 cut(s) | 43, 999 |
| BspFNI | CGCG | 1 cut(s) | 669 |
| BspHI | TCATGA | 1 cut(s) | 556 |
| BspLI | GGNNCC | 3 cut(s) | 686, 853, 934 |
| BspMAI | CTGCAG | 1 cut(s) | 538 |
| BspPI | GGATC | 4 cut(s) | 230, 293, 551, 621 |
| BspT107I | GGYRCC | 2 cut(s) | 851, 932 |
| BspTI | CTTAAG | 1 cut(s) | 809 |
| BsrBI | CCGCTC | 1 cut(s) | 241 |
| BsrI | ACTGG | 2 cut(s) | 65, 244 |
| BssECI | CCNNGG | 5 cut(s) | 630, 847, 875, 906, 937 |
| BssMI | GATC | 5 cut(s) | 235, 285, 444, 543, 626 |
| BssNI | GRCGYC | 1 cut(s) | 903 |
| BssSI | CACGAG | 1 cut(s) | 882 |
| BssT1I | CCWWGG | 4 cut(s) | 630, 875, 906, 937 |
| Bst2BI | CACGAG | 1 cut(s) | 882 |
| Bst2UI | CCWGG | 2 cut(s) | 131, 848 |
| Bst4CI | ACNGT | 2 cut(s) | 145, 701 |
| BstACI | GRCGYC | 1 cut(s) | 903 |
| BstAFI | CTTAAG | 1 cut(s) | 809 |
| BstC8I | GCNNGC | 3 cut(s) | 83, 153, 816 |
| BstDEI | CTNAG | 7 cut(s) | 30, 184, 510, 675, 707, 986, 1053 |
| BstDSI | CCRYGG | 2 cut(s) | 630, 906 |
| BstF5I | GGATG | 6 cut(s) | 210, 238, 600, 861, 915, 916 |
| BstFNI | CGCG | 1 cut(s) | 669 |
| BstHHI | GCGC | 1 cut(s) | 671 |
| BstKTI | GATC | 5 cut(s) | 238, 288, 447, 546, 629 |
| BstMAI | GTCTC | 3 cut(s) | 362, 496, 841 |
| BstMBI | GATC | 5 cut(s) | 235, 285, 444, 543, 626 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 167, 176, 197, 691, 1021 |
| BstNI | CCWGG | 2 cut(s) | 131, 848 |
| BstNSI | RCATGY | 1 cut(s) | 836 |
| BstSCI | CCNGG | 2 cut(s) | 129, 846 |
| BstSFI | CTRYAG | 1 cut(s) | 534 |
| BstSLI | GKGCMC | 2 cut(s) | 854, 937 |
| BstUI | CGCG | 1 cut(s) | 669 |
| BstV1I | GCAGC | 1 cut(s) | 934 |
| BstV2I | GAAGAC | 2 cut(s) | 273, 476 |
| BstX2I | RGATCY | 2 cut(s) | 285, 626 |
| BstYI | RGATCY | 2 cut(s) | 285, 626 |
| Bsu36I | CCTNAGG | 1 cut(s) | 707 |
| BsuI | GTATCC | 1 cut(s) | 706 |
| BsuRI | GGCC | 1 cut(s) | 991 |
| BtgI | CCRYGG | 2 cut(s) | 630, 906 |
| BtrI | CACGTC | 1 cut(s) | 136 |
| BtsCI | GGATG | 6 cut(s) | 210, 238, 600, 861, 915, 916 |
| BtsIMutI | CAGTG | 2 cut(s) | 58, 582 |
| Cac8I | GCNNGC | 3 cut(s) | 83, 153, 816 |
| CciI | TCATGA | 1 cut(s) | 556 |
| CfoI | GCGC | 1 cut(s) | 671 |
| Cfr13I | GGNCC | 2 cut(s) | 731, 990 |
| CseI | GACGC | 2 cut(s) | 911, 991 |
| Csp6I | GTAC | 1 cut(s) | 247 |
| CviAII | CATG | 7 cut(s) | 317, 557, 631, 833, 899, 907, 923 |
| CviQI | GTAC | 1 cut(s) | 247 |
| DdeI | CTNAG | 7 cut(s) | 30, 184, 510, 675, 707, 986, 1053 |
| DpnI | GATC | 5 cut(s) | 237, 287, 446, 545, 628 |
| DpnII | GATC | 5 cut(s) | 235, 285, 444, 543, 626 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 729 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 729 |
| EciI | GGCGGA | 1 cut(s) | 68 |
| Ecl136II | GAGCTC | 1 cut(s) | 562 |
| Eco130I | CCWWGG | 4 cut(s) | 630, 875, 906, 937 |
| Eco24I | GRGCYC | 2 cut(s) | 564, 883 |
| Eco32I | GATATC | 1 cut(s) | 56 |
| Eco47I | GGWCC | 1 cut(s) | 731 |
| Eco53kI | GAGCTC | 1 cut(s) | 562 |
| Eco81I | CCTNAGG | 1 cut(s) | 707 |
| Eco88I | CYCGRG | 1 cut(s) | 119 |
| EcoICRI | GAGCTC | 1 cut(s) | 562 |
| EcoRI | GAATTC | 1 cut(s) | 653 |
| EcoRII | CCWGG | 2 cut(s) | 129, 846 |
| EcoRV | GATATC | 1 cut(s) | 56 |
| EcoT14I | CCWWGG | 4 cut(s) | 630, 875, 906, 937 |
| EcoT38I | GRGCYC | 2 cut(s) | 564, 883 |
| ErhI | CCWWGG | 4 cut(s) | 630, 875, 906, 937 |
| Esp3I | CGTCTC | 1 cut(s) | 496 |
| FaeI | CATG | 7 cut(s) | 320, 560, 634, 836, 902, 910, 926 |
| FaqI | GGGAC | 1 cut(s) | 875 |
| FatI | CATG | 7 cut(s) | 316, 556, 630, 832, 898, 906, 922 |
| FauI | CCCGC | 1 cut(s) | 807 |
| FauNDI | CATATG | 1 cut(s) | 228 |
| FblI | GTMKAC | 1 cut(s) | 782 |
| Fnu4HI | GCNGC | 1 cut(s) | 948 |
| FokI | GGATG | 6 cut(s) | 197, 245, 587, 848, 902, 923 |
| FriOI | GRGCYC | 2 cut(s) | 564, 883 |
| Fsp4HI | GCNGC | 1 cut(s) | 948 |
| FspBI | CTAG | 4 cut(s) | 107, 338, 876, 938 |
| GlaI | GCGC | 1 cut(s) | 670 |
| GluI | GCNGC | 1 cut(s) | 948 |
| GsuI | CTGGAG | 1 cut(s) | 227 |
| HaeIII | GGCC | 1 cut(s) | 991 |
| HgaI | GACGC | 2 cut(s) | 911, 991 |
| HhaI | GCGC | 1 cut(s) | 671 |
| Hin1I | GRCGYC | 1 cut(s) | 903 |
| Hin1II | CATG | 7 cut(s) | 320, 560, 634, 836, 902, 910, 926 |
| Hin6I | GCGC | 1 cut(s) | 669 |
| HinP1I | GCGC | 1 cut(s) | 669 |
| HincII | GTYRAC | 1 cut(s) | 141 |
| HindII | GTYRAC | 1 cut(s) | 141 |
| HindIII | AAGCTT | 1 cut(s) | 159 |
| HinfI | GANTC | 4 cut(s) | 102, 220, 320, 472 |
| HpaI | GTTAAC | 1 cut(s) | 141 |
| HphI | GGTGA | 5 cut(s) | 753, 836, 938, 946, 953 |
| Hpy166II | GTNNAC | 2 cut(s) | 141, 783 |
| Hpy188I | TCNGA | 2 cut(s) | 400, 981 |
| Hpy188III | TCNNGA | 7 cut(s) | 51, 119, 332, 386, 557, 624, 650 |
| Hpy8I | GTNNAC | 2 cut(s) | 141, 783 |
| HpyAV | CCTTC | 5 cut(s) | 270, 493, 675, 749, 781 |
| HpyCH4III | ACNGT | 2 cut(s) | 145, 701 |
| HpyCH4IV | ACGT | 3 cut(s) | 135, 312, 724 |
| HpyCH4V | TGCA | 4 cut(s) | 497, 536, 887, 950 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 167, 176, 197, 691, 1021 |
| HpyF3I | CTNAG | 7 cut(s) | 30, 184, 510, 675, 707, 986, 1053 |
| HpySE526I | ACGT | 3 cut(s) | 135, 312, 724 |
| Hsp92I | GRCGYC | 1 cut(s) | 903 |
| Hsp92II | CATG | 7 cut(s) | 320, 560, 634, 836, 902, 910, 926 |
| HspAI | GCGC | 1 cut(s) | 669 |
| KspAI | GTTAAC | 1 cut(s) | 141 |
| Kzo9I | GATC | 5 cut(s) | 235, 285, 444, 543, 626 |
| LmnI | GCTCC | 2 cut(s) | 246, 690 |
| Lsp1109I | GCAGC | 1 cut(s) | 934 |
| LweI | GCATC | 3 cut(s) | 94, 924, 934 |
| MaeI | CTAG | 4 cut(s) | 107, 338, 876, 938 |
| MaeII | ACGT | 3 cut(s) | 135, 312, 724 |
| MaeIII | GTNAC | 4 cut(s) | 5, 529, 580, 701 |
| MalI | GATC | 5 cut(s) | 237, 287, 446, 545, 628 |
| MbiI | CCGCTC | 1 cut(s) | 241 |
| MboI | GATC | 5 cut(s) | 235, 285, 444, 543, 626 |
| MboII | GAAGA | 5 cut(s) | 275, 278, 308, 481, 622 |
| MfeI | CAATTG | 1 cut(s) | 42 |
| MflI | RGATCY | 2 cut(s) | 285, 626 |
| MhlI | GDGCHC | 4 cut(s) | 564, 854, 883, 937 |
| MlyI | GAGTC | 3 cut(s) | 214, 314, 466 |
| MnlI | CCTC | 3 cut(s) | 181, 868, 1035 |
| MroXI | GAANNNNTTC | 1 cut(s) | 405 |
| MseI | TTAA | 5 cut(s) | 140, 375, 414, 422, 810 |
| MslI | CAYNNNNRTG | 6 cut(s) | 215, 231, 605, 831, 924, 927 |
| MspCI | CTTAAG | 1 cut(s) | 809 |
| MspR9I | CCNGG | 2 cut(s) | 131, 848 |
| MunI | CAATTG | 1 cut(s) | 42 |
| MvaI | CCWGG | 2 cut(s) | 131, 848 |
| MvnI | CGCG | 1 cut(s) | 669 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 167, 176, 197, 691, 1021 |
| NcoI | CCATGG | 2 cut(s) | 630, 906 |
| NdeI | CATATG | 1 cut(s) | 228 |
| NdeII | GATC | 5 cut(s) | 235, 285, 444, 543, 626 |
| NlaIII | CATG | 7 cut(s) | 320, 560, 634, 836, 902, 910, 926 |
| NlaIV | GGNNCC | 3 cut(s) | 686, 853, 934 |
| NmuCI | GTSAC | 1 cut(s) | 580 |
| NspI | RCATGY | 1 cut(s) | 836 |
| PaeR7I | CTCGAG | 1 cut(s) | 119 |
| PagI | TCATGA | 1 cut(s) | 556 |
| PciI | ACATGT | 1 cut(s) | 832 |
| PdmI | GAANNNNTTC | 1 cut(s) | 405 |
| PfeI | GAWTC | 1 cut(s) | 102 |
| PkrI | GCNGC | 1 cut(s) | 949 |
| PleI | GAGTC | 3 cut(s) | 214, 314, 466 |
| PpsI | GAGTC | 3 cut(s) | 214, 314, 466 |
| PscI | ACATGT | 1 cut(s) | 832 |
| Psp124BI | GAGCTC | 1 cut(s) | 564 |
| Psp6I | CCWGG | 2 cut(s) | 129, 846 |
| PspGI | CCWGG | 2 cut(s) | 129, 846 |
| PspN4I | GGNNCC | 3 cut(s) | 686, 853, 934 |
| PspPI | GGNCC | 2 cut(s) | 731, 990 |
| PstI | CTGCAG | 1 cut(s) | 538 |
| PsuI | RGATCY | 2 cut(s) | 285, 626 |
| RsaI | GTAC | 1 cut(s) | 248 |
| RsaNI | GTAC | 1 cut(s) | 247 |
| RseI | CAYNNNNRTG | 6 cut(s) | 215, 231, 605, 831, 924, 927 |
| SacI | GAGCTC | 1 cut(s) | 564 |
| SaqAI | TTAA | 5 cut(s) | 140, 375, 414, 422, 810 |
| SatI | GCNGC | 1 cut(s) | 948 |
| Sau3AI | GATC | 5 cut(s) | 235, 285, 444, 543, 626 |
| Sau96I | GGNCC | 2 cut(s) | 731, 990 |
| SchI | GAGTC | 3 cut(s) | 214, 314, 466 |
| ScrFI | CCNGG | 2 cut(s) | 131, 848 |
| SduI | GDGCHC | 4 cut(s) | 564, 854, 883, 937 |
| SfaNI | GCATC | 3 cut(s) | 94, 924, 934 |
| SfcI | CTRYAG | 1 cut(s) | 534 |
| Sfr274I | CTCGAG | 1 cut(s) | 119 |
| SinI | GGWCC | 1 cut(s) | 731 |
| SlaI | CTCGAG | 1 cut(s) | 119 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 215, 231, 605, 831, 924, 927 |
| SmlI | CTYRAG | 4 cut(s) | 89, 119, 156, 809 |
| SmoI | CTYRAG | 4 cut(s) | 89, 119, 156, 809 |
| SsiI | CCGC | 5 cut(s) | 79, 239, 361, 814, 855 |
| SspMI | CTAG | 4 cut(s) | 107, 338, 876, 938 |
| SstI | GAGCTC | 1 cut(s) | 564 |
| StyD4I | CCNGG | 2 cut(s) | 129, 846 |
| StyI | CCWWGG | 4 cut(s) | 630, 875, 906, 937 |
| TaaI | ACNGT | 2 cut(s) | 145, 701 |
| TaiI | ACGT | 3 cut(s) | 138, 315, 727 |
| TaqI | TCGA | 4 cut(s) | 120, 294, 520, 623 |
| TfiI | GAWTC | 1 cut(s) | 102 |
| Tru1I | TTAA | 5 cut(s) | 140, 375, 414, 422, 810 |
| Tru9I | TTAA | 5 cut(s) | 140, 375, 414, 422, 810 |
| TscAI | CASTG | 2 cut(s) | 65, 589 |
| TseFI | GTSAC | 1 cut(s) | 580 |
| TseI | GCWGC | 1 cut(s) | 947 |
| Tsp45I | GTSAC | 1 cut(s) | 580 |
| TspDTI | ATGAA | 4 cut(s) | 272, 276, 545, 590 |
| TspGWI | ACGGA | 1 cut(s) | 556 |
| TspRI | CASTG | 2 cut(s) | 65, 589 |
| Vha464I | CTTAAG | 1 cut(s) | 809 |
| VpaK11BI | GGWCC | 1 cut(s) | 731 |
| XapI | RAATTY | 3 cut(s) | 428, 653, 1000 |
| XceI | RCATGY | 1 cut(s) | 836 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 926 |
| XhoI | CTCGAG | 1 cut(s) | 119 |
| XmaJI | CCTAGG | 2 cut(s) | 875, 937 |
| XmiI | GTMKAC | 1 cut(s) | 782 |
| XmnI | GAANNNNTTC | 1 cut(s) | 405 |
| XspI | CTAG | 4 cut(s) | 107, 338, 876, 938 |