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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 987 |
| AarI | CACCTGC | 1 cut(s) | 308 |
| AatII | GACGTC | 1 cut(s) | 429 |
| Acc36I | ACCTGC | 1 cut(s) | 308 |
| AciI | CCGC | 5 cut(s) | 54, 57, 268, 294, 955 |
| AclI | AACGTT | 1 cut(s) | 906 |
| AcoI | YGGCCR | 4 cut(s) | 265, 536, 576, 601 |
| AcuI | CTGAAG | 2 cut(s) | 304, 434 |
| AcyI | GRCGYC | 1 cut(s) | 426 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 94, 679, 856 |
| AflII | CTTAAG | 1 cut(s) | 704 |
| AgsI | TTSAA | 7 cut(s) | 38, 68, 637, 782, 884, 970, 1104 |
| AjiI | CACGTC | 1 cut(s) | 485 |
| AjnI | CCWGG | 1 cut(s) | 80 |
| Alw21I | GWGCWC | 1 cut(s) | 756 |
| Alw26I | GTCTC | 3 cut(s) | 647, 1017, 1071 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 196 |
| AoxI | GGCC | 9 cut(s) | 96, 245, 265, 353, 372, 393, 536, 576, 601 |
| ApeKI | GCWGC | 6 cut(s) | 193, 196, 199, 408, 490, 892 |
| AspA2I | CCTAGG | 1 cut(s) | 350 |
| AspLEI | GCGC | 2 cut(s) | 468, 696 |
| AspS9I | GGNCC | 5 cut(s) | 205, 354, 373, 394, 682 |
| AsuC2I | CCSGG | 1 cut(s) | 147 |
| AsuHPI | GGTGA | 4 cut(s) | 67, 179, 207, 224 |
| AsuII | TTCGAA | 1 cut(s) | 152 |
| AvaII | GGWCC | 2 cut(s) | 205, 682 |
| AvrII | CCTAGG | 1 cut(s) | 350 |
| BanII | GRGCYC | 1 cut(s) | 89 |
| BbsI | GAAGAC | 1 cut(s) | 867 |
| Bbv12I | GWGCWC | 1 cut(s) | 756 |
| BbvI | GCAGC | 6 cut(s) | 183, 205, 211, 420, 502, 904 |
| BccI | CCATC | 8 cut(s) | 343, 523, 707, 737, 809, 936, 1012, 1091 |
| BceAI | ACGGC | 1 cut(s) | 551 |
| BciT130I | CCWGG | 1 cut(s) | 82 |
| BciVI | GTATCC | 1 cut(s) | 662 |
| BcnI | CCSGG | 1 cut(s) | 147 |
| BcoDI | GTCTC | 3 cut(s) | 647, 1017, 1071 |
| BfaI | CTAG | 3 cut(s) | 249, 351, 741 |
| BfmI | CTRYAG | 1 cut(s) | 197 |
| BfrI | CTTAAG | 1 cut(s) | 704 |
| BfuAI | ACCTGC | 1 cut(s) | 308 |
| BfuI | GTATCC | 1 cut(s) | 662 |
| BglII | AGATCT | 1 cut(s) | 359 |
| BisI | GCNGC | 8 cut(s) | 57, 194, 197, 200, 268, 409, 491, 893 |
| BlnI | CCTAGG | 1 cut(s) | 350 |
| BlsI | GCNGC | 8 cut(s) | 58, 195, 198, 201, 269, 410, 492, 894 |
| Bme1390I | CCNGG | 2 cut(s) | 82, 147 |
| Bme18I | GGWCC | 2 cut(s) | 205, 682 |
| BmgBI | CACGTC | 1 cut(s) | 485 |
| BmgT120I | GGNCC | 5 cut(s) | 205, 354, 373, 394, 682 |
| BmiI | GGNNCC | 5 cut(s) | 86, 119, 207, 242, 683 |
| BmrFI | CCNGG | 2 cut(s) | 82, 147 |
| BmsI | GCATC | 1 cut(s) | 312 |
| BpiI | GAAGAC | 1 cut(s) | 867 |
| BpmI | CTGGAG | 2 cut(s) | 64, 671 |
| Bpu14I | TTCGAA | 1 cut(s) | 152 |
| BpuEI | CTTGAG | 1 cut(s) | 908 |
| BpuMI | CCSGG | 1 cut(s) | 147 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1055 |
| BsaHI | GRCGYC | 1 cut(s) | 426 |
| BsaJI | CCNNGG | 3 cut(s) | 350, 369, 390 |
| BsaWI | WCCGGW | 3 cut(s) | 217, 237, 340 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 94, 679, 856 |
| Bse118I | RCCGGY | 3 cut(s) | 98, 114, 243 |
| Bse1I | ACTGG | 2 cut(s) | 654, 664 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1055 |
| BseBI | CCWGG | 1 cut(s) | 82 |
| BseDI | CCNNGG | 3 cut(s) | 350, 369, 390 |
| BseGI | GGATG | 3 cut(s) | 429, 621, 729 |
| BseJI | GATNNNNATC | 1 cut(s) | 1055 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 94, 679, 856 |
| BseMII | CTCAG | 1 cut(s) | 377 |
| BseNI | ACTGG | 2 cut(s) | 654, 664 |
| BseX3I | CGGCCG | 1 cut(s) | 265 |
| BseXI | GCAGC | 6 cut(s) | 183, 205, 211, 420, 502, 904 |
| BseYI | CCCAGC | 1 cut(s) | 404 |
| Bsh1285I | CGRYCG | 1 cut(s) | 268 |
| BshFI | GGCC | 9 cut(s) | 98, 247, 267, 355, 374, 395, 538, 578, 603 |
| BsiEI | CGRYCG | 1 cut(s) | 268 |
| BsiHKAI | GWGCWC | 1 cut(s) | 756 |
| BsiSI | CCGG | 8 cut(s) | 99, 115, 147, 218, 238, 244, 341, 575 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 94, 679, 856 |
| BsmAI | GTCTC | 3 cut(s) | 647, 1017, 1071 |
| BsnI | GGCC | 9 cut(s) | 98, 247, 267, 355, 374, 395, 538, 578, 603 |
| Bsp119I | TTCGAA | 1 cut(s) | 152 |
| Bsp1286I | GDGCHC | 2 cut(s) | 89, 756 |
| Bsp143I | GATC | 3 cut(s) | 212, 359, 1056 |
| BspACI | CCGC | 5 cut(s) | 54, 57, 268, 294, 955 |
| BspANI | GGCC | 9 cut(s) | 98, 247, 267, 355, 374, 395, 538, 578, 603 |
| BspCNI | CTCAG | 1 cut(s) | 376 |
| BspHI | TCATGA | 1 cut(s) | 810 |
| BspLI | GGNNCC | 5 cut(s) | 86, 119, 207, 242, 683 |
| BspMAI | CTGCAG | 1 cut(s) | 201 |
| BspMI | ACCTGC | 1 cut(s) | 308 |
| BspT104I | TTCGAA | 1 cut(s) | 152 |
| BspTI | CTTAAG | 1 cut(s) | 704 |
| BsrFI | RCCGGY | 3 cut(s) | 98, 114, 243 |
| BsrI | ACTGG | 2 cut(s) | 654, 664 |
| BssAI | RCCGGY | 3 cut(s) | 98, 114, 243 |
| BssECI | CCNNGG | 3 cut(s) | 350, 369, 390 |
| BssMI | GATC | 3 cut(s) | 212, 359, 1056 |
| BssNI | GRCGYC | 1 cut(s) | 426 |
| BssT1I | CCWWGG | 3 cut(s) | 350, 369, 390 |
| Bst2UI | CCWGG | 1 cut(s) | 82 |
| Bst4CI | ACNGT | 1 cut(s) | 472 |
| BstACI | GRCGYC | 1 cut(s) | 426 |
| BstAFI | CTTAAG | 1 cut(s) | 704 |
| BstBI | TTCGAA | 1 cut(s) | 152 |
| BstC8I | GCNNGC | 4 cut(s) | 100, 479, 540, 768 |
| BstDEI | CTNAG | 1 cut(s) | 363 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 854 |
| BstF5I | GGATG | 3 cut(s) | 429, 621, 729 |
| BstHHI | GCGC | 2 cut(s) | 468, 696 |
| BstKTI | GATC | 3 cut(s) | 215, 362, 1059 |
| BstMAI | GTCTC | 3 cut(s) | 647, 1017, 1071 |
| BstMBI | GATC | 3 cut(s) | 212, 359, 1056 |
| BstMCI | CGRYCG | 1 cut(s) | 268 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 199, 452, 474, 487, 791 |
| BstNI | CCWGG | 1 cut(s) | 82 |
| BstSCI | CCNGG | 2 cut(s) | 80, 145 |
| BstSFI | CTRYAG | 1 cut(s) | 197 |
| BstV1I | GCAGC | 6 cut(s) | 183, 205, 211, 420, 502, 904 |
| BstV2I | GAAGAC | 1 cut(s) | 867 |
| BstX2I | RGATCY | 1 cut(s) | 359 |
| BstYI | RGATCY | 1 cut(s) | 359 |
| BstZI | CGGCCG | 1 cut(s) | 265 |
| BsuI | GTATCC | 1 cut(s) | 662 |
| BsuRI | GGCC | 9 cut(s) | 98, 247, 267, 355, 374, 395, 538, 578, 603 |
| BtgZI | GCGATG | 1 cut(s) | 955 |
| BtrI | CACGTC | 1 cut(s) | 485 |
| BtsCI | GGATG | 3 cut(s) | 429, 621, 729 |
| BtsIMutI | CAGTG | 1 cut(s) | 647 |
| BveI | ACCTGC | 1 cut(s) | 308 |
| Cac8I | GCNNGC | 4 cut(s) | 100, 479, 540, 768 |
| CaiI | CAGNNNCTG | 1 cut(s) | 196 |
| CciI | TCATGA | 1 cut(s) | 810 |
| CfoI | GCGC | 2 cut(s) | 468, 696 |
| Cfr10I | RCCGGY | 3 cut(s) | 98, 114, 243 |
| Cfr13I | GGNCC | 5 cut(s) | 205, 354, 373, 394, 682 |
| CviAII | CATG | 4 cut(s) | 507, 811, 823, 1131 |
| DdeI | CTNAG | 1 cut(s) | 363 |
| DpnI | GATC | 3 cut(s) | 214, 361, 1058 |
| DpnII | GATC | 3 cut(s) | 212, 359, 1056 |
| EaeI | YGGCCR | 4 cut(s) | 265, 536, 576, 601 |
| EagI | CGGCCG | 1 cut(s) | 265 |
| EciI | GGCGGA | 1 cut(s) | 43 |
| EclXI | CGGCCG | 1 cut(s) | 265 |
| Eco130I | CCWWGG | 3 cut(s) | 350, 369, 390 |
| Eco24I | GRGCYC | 1 cut(s) | 89 |
| Eco32I | GATATC | 1 cut(s) | 135 |
| Eco47I | GGWCC | 2 cut(s) | 205, 682 |
| Eco52I | CGGCCG | 1 cut(s) | 265 |
| Eco57I | CTGAAG | 2 cut(s) | 304, 434 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 854 |
| EcoO109I | RGGNCCY | 1 cut(s) | 205 |
| EcoRII | CCWGG | 1 cut(s) | 80 |
| EcoRV | GATATC | 1 cut(s) | 135 |
| EcoT14I | CCWWGG | 3 cut(s) | 350, 369, 390 |
| EcoT38I | GRGCYC | 1 cut(s) | 89 |
| ErhI | CCWWGG | 3 cut(s) | 350, 369, 390 |
| FaeI | CATG | 4 cut(s) | 510, 814, 826, 1134 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 623, 655 |
| FatI | CATG | 4 cut(s) | 506, 810, 822, 1130 |
| Fnu4HI | GCNGC | 8 cut(s) | 57, 194, 197, 200, 268, 409, 491, 893 |
| FokI | GGATG | 3 cut(s) | 416, 628, 716 |
| FriOI | GRGCYC | 1 cut(s) | 89 |
| Fsp4HI | GCNGC | 8 cut(s) | 57, 194, 197, 200, 268, 409, 491, 893 |
| FspBI | CTAG | 3 cut(s) | 249, 351, 741 |
| GlaI | GCGC | 2 cut(s) | 467, 695 |
| GluI | GCNGC | 8 cut(s) | 57, 194, 197, 200, 268, 409, 491, 893 |
| GsaI | CCCAGC | 1 cut(s) | 408 |
| GsuI | CTGGAG | 2 cut(s) | 64, 671 |
| HaeIII | GGCC | 9 cut(s) | 98, 247, 267, 355, 374, 395, 538, 578, 603 |
| HapII | CCGG | 8 cut(s) | 99, 115, 147, 218, 238, 244, 341, 575 |
| HhaI | GCGC | 2 cut(s) | 468, 696 |
| Hin1I | GRCGYC | 1 cut(s) | 426 |
| Hin1II | CATG | 4 cut(s) | 510, 814, 826, 1134 |
| Hin6I | GCGC | 2 cut(s) | 466, 694 |
| HinP1I | GCGC | 2 cut(s) | 466, 694 |
| HincII | GTYRAC | 6 cut(s) | 326, 500, 512, 523, 533, 554 |
| HindII | GTYRAC | 6 cut(s) | 326, 500, 512, 523, 533, 554 |
| HindIII | AAGCTT | 1 cut(s) | 155 |
| HinfI | GANTC | 2 cut(s) | 261, 914 |
| HpaII | CCGG | 8 cut(s) | 99, 115, 147, 218, 238, 244, 341, 575 |
| HphI | GGTGA | 4 cut(s) | 67, 179, 207, 224 |
| Hpy166II | GTNNAC | 6 cut(s) | 326, 500, 512, 523, 533, 554 |
| Hpy188I | TCNGA | 6 cut(s) | 424, 686, 747, 994, 1017, 1116 |
| Hpy188III | TCNNGA | 6 cut(s) | 121, 722, 811, 911, 926, 1060 |
| Hpy8I | GTNNAC | 6 cut(s) | 326, 500, 512, 523, 533, 554 |
| HpyAV | CCTTC | 2 cut(s) | 44, 1087 |
| HpyCH4III | ACNGT | 1 cut(s) | 472 |
| HpyCH4IV | ACGT | 4 cut(s) | 426, 484, 750, 906 |
| HpyCH4V | TGCA | 2 cut(s) | 199, 303 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 199, 452, 474, 487, 791 |
| HpyF3I | CTNAG | 1 cut(s) | 363 |
| HpySE526I | ACGT | 4 cut(s) | 426, 484, 750, 906 |
| Hsp92I | GRCGYC | 1 cut(s) | 426 |
| Hsp92II | CATG | 4 cut(s) | 510, 814, 826, 1134 |
| HspAI | GCGC | 2 cut(s) | 466, 694 |
| KroI | GCCGGC | 1 cut(s) | 98 |
| KroNI | GCCGGC | 1 cut(s) | 100 |
| Kzo9I | GATC | 3 cut(s) | 212, 359, 1056 |
| LmnI | GCTCC | 4 cut(s) | 84, 123, 220, 840 |
| Lsp1109I | GCAGC | 6 cut(s) | 183, 205, 211, 420, 502, 904 |
| LweI | GCATC | 1 cut(s) | 312 |
| MaeI | CTAG | 3 cut(s) | 249, 351, 741 |
| MaeII | ACGT | 4 cut(s) | 426, 484, 750, 906 |
| MaeIII | GTNAC | 2 cut(s) | 620, 911 |
| MalI | GATC | 3 cut(s) | 214, 361, 1058 |
| MboI | GATC | 3 cut(s) | 212, 359, 1056 |
| MboII | GAAGA | 1 cut(s) | 872 |
| MflI | RGATCY | 1 cut(s) | 359 |
| MhlI | GDGCHC | 2 cut(s) | 89, 756 |
| MluCI | AATT | 1 cut(s) | 1108 |
| MlyI | GAGTC | 1 cut(s) | 908 |
| MnlI | CCTC | 9 cut(s) | 61, 88, 148, 172, 430, 466, 514, 860, 962 |
| MroNI | GCCGGC | 1 cut(s) | 98 |
| MseI | TTAA | 3 cut(s) | 591, 611, 705 |
| MslI | CAYNNNNRTG | 3 cut(s) | 434, 809, 825 |
| MspA1I | CMGCKG | 1 cut(s) | 196 |
| MspCI | CTTAAG | 1 cut(s) | 704 |
| MspI | CCGG | 8 cut(s) | 99, 115, 147, 218, 238, 244, 341, 575 |
| MspR9I | CCNGG | 2 cut(s) | 82, 147 |
| MvaI | CCWGG | 1 cut(s) | 82 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 199, 452, 474, 487, 791 |
| NaeI | GCCGGC | 1 cut(s) | 100 |
| NciI | CCSGG | 1 cut(s) | 147 |
| NdeII | GATC | 3 cut(s) | 212, 359, 1056 |
| NgoMIV | GCCGGC | 1 cut(s) | 98 |
| NlaIII | CATG | 4 cut(s) | 510, 814, 826, 1134 |
| NlaIV | GGNNCC | 5 cut(s) | 86, 119, 207, 242, 683 |
| NmuCI | GTSAC | 1 cut(s) | 911 |
| NspV | TTCGAA | 1 cut(s) | 152 |
| PagI | TCATGA | 1 cut(s) | 810 |
| PaqCI | CACCTGC | 1 cut(s) | 308 |
| PdiI | GCCGGC | 1 cut(s) | 100 |
| PfeI | GAWTC | 1 cut(s) | 261 |
| PfoI | TCCNGGA | 1 cut(s) | 80 |
| PkrI | GCNGC | 8 cut(s) | 58, 195, 198, 201, 269, 410, 492, 894 |
| PleI | GAGTC | 1 cut(s) | 908 |
| PpsI | GAGTC | 1 cut(s) | 908 |
| PpuMI | RGGWCCY | 1 cut(s) | 205 |
| PsiI | TTATAA | 1 cut(s) | 987 |
| Psp1406I | AACGTT | 1 cut(s) | 906 |
| Psp5II | RGGWCCY | 1 cut(s) | 205 |
| Psp6I | CCWGG | 1 cut(s) | 80 |
| PspFI | CCCAGC | 1 cut(s) | 404 |
| PspGI | CCWGG | 1 cut(s) | 80 |
| PspN4I | GGNNCC | 5 cut(s) | 86, 119, 207, 242, 683 |
| PspPI | GGNCC | 5 cut(s) | 205, 354, 373, 394, 682 |
| PspPPI | RGGWCCY | 1 cut(s) | 205 |
| PstI | CTGCAG | 1 cut(s) | 201 |
| PstNI | CAGNNNCTG | 1 cut(s) | 196 |
| PsuI | RGATCY | 1 cut(s) | 359 |
| PvuII | CAGCTG | 1 cut(s) | 196 |
| RseI | CAYNNNNRTG | 3 cut(s) | 434, 809, 825 |
| SaqAI | TTAA | 3 cut(s) | 591, 611, 705 |
| SatI | GCNGC | 8 cut(s) | 57, 194, 197, 200, 268, 409, 491, 893 |
| Sau3AI | GATC | 3 cut(s) | 212, 359, 1056 |
| Sau96I | GGNCC | 5 cut(s) | 205, 354, 373, 394, 682 |
| SchI | GAGTC | 1 cut(s) | 908 |
| ScrFI | CCNGG | 2 cut(s) | 82, 147 |
| SduI | GDGCHC | 2 cut(s) | 89, 756 |
| SfaNI | GCATC | 1 cut(s) | 312 |
| SfcI | CTRYAG | 1 cut(s) | 197 |
| SfuI | TTCGAA | 1 cut(s) | 152 |
| SinI | GGWCC | 2 cut(s) | 205, 682 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 434, 809, 825 |
| SmlI | CTYRAG | 2 cut(s) | 704, 887 |
| SmoI | CTYRAG | 2 cut(s) | 704, 887 |
| Sse9I | AATT | 1 cut(s) | 1108 |
| SsiI | CCGC | 5 cut(s) | 54, 57, 268, 294, 955 |
| SspMI | CTAG | 3 cut(s) | 249, 351, 741 |
| StyD4I | CCNGG | 2 cut(s) | 80, 145 |
| StyI | CCWWGG | 3 cut(s) | 350, 369, 390 |
| TaaI | ACNGT | 1 cut(s) | 472 |
| TaiI | ACGT | 4 cut(s) | 429, 487, 753, 909 |
| TaqI | TCGA | 2 cut(s) | 152, 1059 |
| TaqII | GACCGA | 1 cut(s) | 518 |
| TasI | AATT | 1 cut(s) | 1108 |
| TauI | GCSGC | 2 cut(s) | 59, 270 |
| TfiI | GAWTC | 1 cut(s) | 261 |
| Tru1I | TTAA | 3 cut(s) | 591, 611, 705 |
| Tru9I | TTAA | 3 cut(s) | 591, 611, 705 |
| TscAI | CASTG | 1 cut(s) | 654 |
| TseFI | GTSAC | 1 cut(s) | 911 |
| TseI | GCWGC | 6 cut(s) | 193, 196, 199, 408, 490, 892 |
| Tsp45I | GTSAC | 1 cut(s) | 911 |
| TspDTI | ATGAA | 1 cut(s) | 839 |
| TspRI | CASTG | 1 cut(s) | 654 |
| Vha464I | CTTAAG | 1 cut(s) | 704 |
| VpaK11BI | GGWCC | 2 cut(s) | 205, 682 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 854 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 873 |
| XmaJI | CCTAGG | 1 cut(s) | 350 |
| XspI | CTAG | 3 cut(s) | 249, 351, 741 |
| ZraI | GACGTC | 1 cut(s) | 427 |