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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 177 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 513 |
| AccB1I | GGYRCC | 1 cut(s) | 353 |
| AccII | CGCG | 1 cut(s) | 23 |
| AciI | CCGC | 2 cut(s) | 145, 722 |
| AclI | AACGTT | 2 cut(s) | 96, 758 |
| AclWI | GGATC | 1 cut(s) | 723 |
| AcoI | YGGCCR | 1 cut(s) | 220 |
| AcyI | GRCGYC | 1 cut(s) | 627 |
| AfaI | GTAC | 1 cut(s) | 744 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 46, 464, 535 |
| AflIII | ACRYGT | 1 cut(s) | 583 |
| AgsI | TTSAA | 2 cut(s) | 160, 294 |
| AluBI | AGCT | 5 cut(s) | 64, 188, 346, 368, 615 |
| AluI | AGCT | 5 cut(s) | 64, 188, 346, 368, 615 |
| Alw21I | GWGCWC | 2 cut(s) | 348, 565 |
| Alw26I | GTCTC | 2 cut(s) | 207, 280 |
| Alw44I | GTGCAC | 1 cut(s) | 561 |
| AlwI | GGATC | 1 cut(s) | 723 |
| AoxI | GGCC | 1 cut(s) | 220 |
| ApaLI | GTGCAC | 1 cut(s) | 561 |
| ApeKI | GCWGC | 1 cut(s) | 82 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 189 |
| AspLEI | GCGC | 1 cut(s) | 25 |
| AsuHPI | GGTGA | 1 cut(s) | 635 |
| BaeGI | GKGCMC | 1 cut(s) | 565 |
| BalI | TGGCCA | 1 cut(s) | 222 |
| BanI | GGYRCC | 1 cut(s) | 353 |
| BanII | GRGCYC | 1 cut(s) | 348 |
| BbsI | GAAGAC | 4 cut(s) | 57, 260, 637, 697 |
| Bbv12I | GWGCWC | 2 cut(s) | 348, 565 |
| BbvI | GCAGC | 1 cut(s) | 94 |
| BccI | CCATC | 3 cut(s) | 126, 202, 820 |
| BcoDI | GTCTC | 2 cut(s) | 207, 280 |
| BfaI | CTAG | 2 cut(s) | 408, 513 |
| BfmI | CTRYAG | 1 cut(s) | 445 |
| BisI | GCNGC | 1 cut(s) | 83 |
| BlsI | GCNGC | 1 cut(s) | 84 |
| BmiI | GGNNCC | 3 cut(s) | 355, 569, 683 |
| BmsI | GCATC | 2 cut(s) | 676, 757 |
| BpiI | GAAGAC | 4 cut(s) | 57, 260, 637, 697 |
| BpmI | CTGGAG | 2 cut(s) | 455, 595 |
| BpuEI | CTTGAG | 1 cut(s) | 98 |
| BsaBI | GATNNNNATC | 4 cut(s) | 245, 714, 830, 836 |
| BsaHI | GRCGYC | 1 cut(s) | 627 |
| BsaJI | CCNNGG | 2 cut(s) | 414, 571 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 46, 464, 535 |
| Bse8I | GATNNNNATC | 4 cut(s) | 245, 714, 830, 836 |
| BseDI | CCNNGG | 2 cut(s) | 414, 571 |
| BseGI | GGATG | 2 cut(s) | 329, 748 |
| BseJI | GATNNNNATC | 4 cut(s) | 245, 714, 830, 836 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 46, 464, 535 |
| BseSI | GKGCMC | 1 cut(s) | 565 |
| BseXI | GCAGC | 1 cut(s) | 94 |
| BsgI | GTGCAG | 1 cut(s) | 264 |
| Bsh1236I | CGCG | 1 cut(s) | 23 |
| BshFI | GGCC | 1 cut(s) | 222 |
| BshNI | GGYRCC | 1 cut(s) | 353 |
| BsiHKAI | GWGCWC | 2 cut(s) | 348, 565 |
| BslFI | GGGAC | 1 cut(s) | 509 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 46, 464, 535 |
| BsmAI | GTCTC | 2 cut(s) | 207, 280 |
| BsmBI | CGTCTC | 1 cut(s) | 280 |
| BsmFI | GGGAC | 1 cut(s) | 509 |
| BsnI | GGCC | 1 cut(s) | 222 |
| Bsp1286I | GDGCHC | 2 cut(s) | 348, 565 |
| Bsp143I | GATC | 6 cut(s) | 246, 673, 715, 819, 831, 837 |
| BspACI | CCGC | 2 cut(s) | 145, 722 |
| BspANI | GGCC | 1 cut(s) | 222 |
| BspFNI | CGCG | 1 cut(s) | 23 |
| BspHI | TCATGA | 1 cut(s) | 340 |
| BspLI | GGNNCC | 3 cut(s) | 355, 569, 683 |
| BspPI | GGATC | 1 cut(s) | 723 |
| BspQI | GCTCTTC | 1 cut(s) | 195 |
| BspT107I | GGYRCC | 1 cut(s) | 353 |
| BssECI | CCNNGG | 2 cut(s) | 414, 571 |
| BssMI | GATC | 6 cut(s) | 246, 673, 715, 819, 831, 837 |
| BssNI | GRCGYC | 1 cut(s) | 627 |
| Bst4CI | ACNGT | 1 cut(s) | 572 |
| Bst6I | CTCTTC | 2 cut(s) | 195, 584 |
| BstACI | GRCGYC | 1 cut(s) | 627 |
| BstC8I | GCNNGC | 2 cut(s) | 561, 765 |
| BstDEI | CTNAG | 2 cut(s) | 423, 486 |
| BstDSI | CCRYGG | 2 cut(s) | 414, 571 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 44 |
| BstF5I | GGATG | 2 cut(s) | 329, 748 |
| BstFNI | CGCG | 1 cut(s) | 23 |
| BstHHI | GCGC | 1 cut(s) | 25 |
| BstKTI | GATC | 6 cut(s) | 249, 676, 718, 822, 834, 840 |
| BstMAI | GTCTC | 2 cut(s) | 207, 280 |
| BstMBI | GATC | 6 cut(s) | 246, 673, 715, 819, 831, 837 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 664, 796 |
| BstSFI | CTRYAG | 1 cut(s) | 445 |
| BstSLI | GKGCMC | 1 cut(s) | 565 |
| BstUI | CGCG | 1 cut(s) | 23 |
| BstV1I | GCAGC | 1 cut(s) | 94 |
| BstV2I | GAAGAC | 4 cut(s) | 57, 260, 637, 697 |
| BsuRI | GGCC | 1 cut(s) | 222 |
| BtgI | CCRYGG | 2 cut(s) | 414, 571 |
| BtgZI | GCGATG | 1 cut(s) | 145 |
| BtsCI | GGATG | 2 cut(s) | 329, 748 |
| BtsIMutI | CAGTG | 1 cut(s) | 281 |
| Cac8I | GCNNGC | 2 cut(s) | 561, 765 |
| CciI | TCATGA | 1 cut(s) | 340 |
| CfoI | GCGC | 1 cut(s) | 25 |
| CseI | GACGC | 3 cut(s) | 29, 477, 635 |
| Csp6I | GTAC | 1 cut(s) | 743 |
| CviAII | CATG | 5 cut(s) | 13, 341, 358, 655, 807 |
| CviQI | GTAC | 1 cut(s) | 743 |
| DdeI | CTNAG | 2 cut(s) | 423, 486 |
| DpnI | GATC | 6 cut(s) | 248, 675, 717, 821, 833, 839 |
| DpnII | GATC | 6 cut(s) | 246, 673, 715, 819, 831, 837 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 513 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 513 |
| EaeI | YGGCCR | 1 cut(s) | 220 |
| Eam1104I | CTCTTC | 2 cut(s) | 195, 584 |
| EarI | CTCTTC | 2 cut(s) | 195, 584 |
| Ecl136II | GAGCTC | 1 cut(s) | 346 |
| Eco24I | GRGCYC | 1 cut(s) | 348 |
| Eco53kI | GAGCTC | 1 cut(s) | 346 |
| EcoICRI | GAGCTC | 1 cut(s) | 346 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 44 |
| EcoT38I | GRGCYC | 1 cut(s) | 348 |
| Esp3I | CGTCTC | 1 cut(s) | 280 |
| FaeI | CATG | 5 cut(s) | 16, 344, 361, 658, 810 |
| FaqI | GGGAC | 1 cut(s) | 509 |
| FatI | CATG | 5 cut(s) | 12, 340, 357, 654, 806 |
| Fnu4HI | GCNGC | 1 cut(s) | 83 |
| FokI | GGATG | 2 cut(s) | 336, 735 |
| FriOI | GRGCYC | 1 cut(s) | 348 |
| Fsp4HI | GCNGC | 1 cut(s) | 83 |
| FspBI | CTAG | 2 cut(s) | 408, 513 |
| GlaI | GCGC | 1 cut(s) | 24 |
| GluI | GCNGC | 1 cut(s) | 83 |
| GsuI | CTGGAG | 2 cut(s) | 455, 595 |
| HaeIII | GGCC | 1 cut(s) | 222 |
| HgaI | GACGC | 3 cut(s) | 29, 477, 635 |
| HhaI | GCGC | 1 cut(s) | 25 |
| Hin1I | GRCGYC | 1 cut(s) | 627 |
| Hin1II | CATG | 5 cut(s) | 16, 344, 361, 658, 810 |
| Hin6I | GCGC | 1 cut(s) | 23 |
| HinP1I | GCGC | 1 cut(s) | 23 |
| HincII | GTYRAC | 1 cut(s) | 581 |
| HindII | GTYRAC | 1 cut(s) | 581 |
| HinfI | GANTC | 3 cut(s) | 104, 256, 437 |
| HphI | GGTGA | 1 cut(s) | 635 |
| Hpy166II | GTNNAC | 3 cut(s) | 563, 581, 743 |
| Hpy188I | TCNGA | 3 cut(s) | 184, 207, 306 |
| Hpy8I | GTNNAC | 3 cut(s) | 563, 581, 743 |
| HpyAV | CCTTC | 1 cut(s) | 277 |
| HpyCH4III | ACNGT | 1 cut(s) | 572 |
| HpyCH4IV | ACGT | 5 cut(s) | 96, 363, 508, 583, 758 |
| HpyCH4V | TGCA | 6 cut(s) | 281, 320, 563, 658, 748, 763 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 664, 796 |
| HpyF3I | CTNAG | 2 cut(s) | 423, 486 |
| HpySE526I | ACGT | 5 cut(s) | 96, 363, 508, 583, 758 |
| Hsp92I | GRCGYC | 1 cut(s) | 627 |
| Hsp92II | CATG | 5 cut(s) | 16, 344, 361, 658, 810 |
| HspAI | GCGC | 1 cut(s) | 23 |
| Kzo9I | GATC | 6 cut(s) | 246, 673, 715, 819, 831, 837 |
| LguI | GCTCTTC | 1 cut(s) | 195 |
| LmnI | GCTCC | 3 cut(s) | 30, 475, 681 |
| LpnPI | CCDG | 8 cut(s) | 122, 129, 306, 419, 489, 625, 698, 766 |
| Lsp1109I | GCAGC | 1 cut(s) | 94 |
| LweI | GCATC | 2 cut(s) | 676, 757 |
| MaeI | CTAG | 2 cut(s) | 408, 513 |
| MaeII | ACGT | 5 cut(s) | 96, 363, 508, 583, 758 |
| MaeIII | GTNAC | 2 cut(s) | 101, 623 |
| MalI | GATC | 6 cut(s) | 248, 675, 717, 821, 833, 839 |
| MboI | GATC | 6 cut(s) | 246, 673, 715, 819, 831, 837 |
| MboII | GAAGA | 9 cut(s) | 62, 182, 265, 406, 551, 601, 637, 697, 829 |
| MhlI | GDGCHC | 2 cut(s) | 348, 565 |
| MlsI | TGGCCA | 1 cut(s) | 222 |
| MluCI | AATT | 3 cut(s) | 298, 499, 801 |
| MluNI | TGGCCA | 1 cut(s) | 222 |
| MlyI | GAGTC | 3 cut(s) | 98, 250, 446 |
| MnlI | CCTC | 9 cut(s) | 40, 50, 152, 458, 549, 569, 591, 619, 789 |
| Mox20I | TGGCCA | 1 cut(s) | 222 |
| MroXI | GAANNNNTTC | 1 cut(s) | 189 |
| MscI | TGGCCA | 1 cut(s) | 222 |
| MslI | CAYNNNNRTG | 2 cut(s) | 15, 695 |
| Msp20I | TGGCCA | 1 cut(s) | 222 |
| MvnI | CGCG | 1 cut(s) | 23 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 664, 796 |
| NdeII | GATC | 6 cut(s) | 246, 673, 715, 819, 831, 837 |
| NlaIII | CATG | 5 cut(s) | 16, 344, 361, 658, 810 |
| NlaIV | GGNNCC | 3 cut(s) | 355, 569, 683 |
| NmuCI | GTSAC | 2 cut(s) | 101, 623 |
| PagI | TCATGA | 1 cut(s) | 340 |
| PciSI | GCTCTTC | 1 cut(s) | 195 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 475 |
| PdmI | GAANNNNTTC | 1 cut(s) | 189 |
| PkrI | GCNGC | 1 cut(s) | 84 |
| PleI | GAGTC | 3 cut(s) | 98, 250, 445 |
| PpsI | GAGTC | 3 cut(s) | 98, 250, 445 |
| PsiI | TTATAA | 1 cut(s) | 177 |
| Psp124BI | GAGCTC | 1 cut(s) | 348 |
| Psp1406I | AACGTT | 2 cut(s) | 96, 758 |
| PspN4I | GGNNCC | 3 cut(s) | 355, 569, 683 |
| RsaI | GTAC | 1 cut(s) | 744 |
| RsaNI | GTAC | 1 cut(s) | 743 |
| RseI | CAYNNNNRTG | 2 cut(s) | 15, 695 |
| SacI | GAGCTC | 1 cut(s) | 348 |
| SapI | GCTCTTC | 1 cut(s) | 195 |
| SatI | GCNGC | 1 cut(s) | 83 |
| Sau3AI | GATC | 6 cut(s) | 246, 673, 715, 819, 831, 837 |
| SchI | GAGTC | 3 cut(s) | 98, 250, 446 |
| SduI | GDGCHC | 2 cut(s) | 348, 565 |
| SfaNI | GCATC | 2 cut(s) | 676, 757 |
| SfcI | CTRYAG | 1 cut(s) | 445 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 15, 695 |
| SmlI | CTYRAG | 1 cut(s) | 77 |
| SmoI | CTYRAG | 1 cut(s) | 77 |
| Sse9I | AATT | 3 cut(s) | 298, 499, 801 |
| SsiI | CCGC | 2 cut(s) | 145, 722 |
| SspI | AATATT | 1 cut(s) | 385 |
| SspMI | CTAG | 2 cut(s) | 408, 513 |
| SstI | GAGCTC | 1 cut(s) | 348 |
| TaaI | ACNGT | 1 cut(s) | 572 |
| TaiI | ACGT | 5 cut(s) | 99, 366, 511, 586, 761 |
| TaqI | TCGA | 4 cut(s) | 249, 672, 708, 836 |
| TasI | AATT | 3 cut(s) | 298, 499, 801 |
| TatI | WGTACW | 1 cut(s) | 742 |
| TscAI | CASTG | 1 cut(s) | 288 |
| TseFI | GTSAC | 2 cut(s) | 101, 623 |
| TseI | GCWGC | 1 cut(s) | 82 |
| Tsp45I | GTSAC | 2 cut(s) | 101, 623 |
| TspDTI | ATGAA | 4 cut(s) | 29, 48, 329, 374 |
| TspGWI | ACGGA | 1 cut(s) | 580 |
| TspRI | CASTG | 1 cut(s) | 288 |
| VneI | GTGCAC | 1 cut(s) | 561 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 44 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 63 |
| XmnI | GAANNNNTTC | 1 cut(s) | 189 |
| XspI | CTAG | 2 cut(s) | 408, 513 |