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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 513 |
| AccB1I | GGYRCC | 1 cut(s) | 468 |
| AciI | CCGC | 2 cut(s) | 145, 642 |
| AclWI | GGATC | 2 cut(s) | 335, 405 |
| AcsI | RAATTY | 1 cut(s) | 212 |
| AcyI | GRCGYC | 1 cut(s) | 469 |
| AgsI | TTSAA | 1 cut(s) | 160 |
| AluBI | AGCT | 4 cut(s) | 346, 356, 623, 674 |
| AluI | AGCT | 4 cut(s) | 346, 356, 623, 674 |
| Alw21I | GWGCWC | 2 cut(s) | 348, 625 |
| Alw26I | GTCTC | 1 cut(s) | 76 |
| AlwI | GGATC | 2 cut(s) | 335, 405 |
| AoxI | GGCC | 1 cut(s) | 453 |
| ApaI | GGGCCC | 1 cut(s) | 457 |
| ApoI | RAATTY | 1 cut(s) | 212 |
| AspLEI | GCGC | 2 cut(s) | 471, 544 |
| AspS9I | GGNCC | 3 cut(s) | 453, 454, 515 |
| AsuHPI | GGTGA | 1 cut(s) | 631 |
| AvaII | GGWCC | 1 cut(s) | 515 |
| AxyI | CCTNAGG | 1 cut(s) | 491 |
| BaeGI | GKGCMC | 2 cut(s) | 457, 610 |
| BanI | GGYRCC | 1 cut(s) | 468 |
| BanII | GRGCYC | 3 cut(s) | 348, 457, 625 |
| BauI | CACGAG | 1 cut(s) | 624 |
| BbsI | GAAGAC | 2 cut(s) | 57, 260 |
| Bbv12I | GWGCWC | 2 cut(s) | 348, 625 |
| BccI | CCATC | 3 cut(s) | 126, 280, 281 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 299, 333 |
| BciVI | GTATCC | 1 cut(s) | 490 |
| BclI | TGATCA | 1 cut(s) | 598 |
| BcoDI | GTCTC | 1 cut(s) | 76 |
| BfaI | CTAG | 2 cut(s) | 122, 710 |
| BfmI | CTRYAG | 1 cut(s) | 318 |
| BfoI | RGCGCY | 2 cut(s) | 472, 545 |
| BfuI | GTATCC | 1 cut(s) | 490 |
| Bme18I | GGWCC | 1 cut(s) | 515 |
| BmgT120I | GGNCC | 3 cut(s) | 453, 454, 515 |
| BmiI | GGNNCC | 3 cut(s) | 455, 456, 470 |
| BpiI | GAAGAC | 2 cut(s) | 57, 260 |
| BpmI | CTGGAG | 1 cut(s) | 11 |
| Bsa29I | ATCGAT | 1 cut(s) | 309 |
| BsaHI | GRCGYC | 1 cut(s) | 469 |
| BsaI | GGTCTC | 1 cut(s) | 76 |
| BsaJI | CCNNGG | 1 cut(s) | 414 |
| Bse21I | CCTNAGG | 1 cut(s) | 491 |
| BseCI | ATCGAT | 1 cut(s) | 309 |
| BseDI | CCNNGG | 1 cut(s) | 414 |
| BseGI | GGATG | 2 cut(s) | 22, 384 |
| BseSI | GKGCMC | 2 cut(s) | 457, 610 |
| BshFI | GGCC | 1 cut(s) | 455 |
| BshNI | GGYRCC | 1 cut(s) | 468 |
| BshVI | ATCGAT | 1 cut(s) | 309 |
| BsiHKAI | GWGCWC | 2 cut(s) | 348, 625 |
| BsmAI | GTCTC | 1 cut(s) | 76 |
| BsnI | GGCC | 1 cut(s) | 455 |
| Bso31I | GGTCTC | 1 cut(s) | 76 |
| Bsp120I | GGGCCC | 1 cut(s) | 453 |
| Bsp1286I | GDGCHC | 4 cut(s) | 348, 457, 610, 625 |
| Bsp143I | GATC | 6 cut(s) | 228, 327, 410, 598, 694, 706 |
| BspACI | CCGC | 2 cut(s) | 145, 642 |
| BspANI | GGCC | 1 cut(s) | 455 |
| BspDI | ATCGAT | 1 cut(s) | 309 |
| BspHI | TCATGA | 1 cut(s) | 340 |
| BspLI | GGNNCC | 3 cut(s) | 455, 456, 470 |
| BspMAI | CTGCAG | 1 cut(s) | 322 |
| BspPI | GGATC | 2 cut(s) | 335, 405 |
| BspT107I | GGYRCC | 1 cut(s) | 468 |
| BspTNI | GGTCTC | 1 cut(s) | 76 |
| BssECI | CCNNGG | 1 cut(s) | 414 |
| BssMI | GATC | 6 cut(s) | 228, 327, 410, 598, 694, 706 |
| BssNI | GRCGYC | 1 cut(s) | 469 |
| BssSI | CACGAG | 1 cut(s) | 624 |
| Bst2BI | CACGAG | 1 cut(s) | 624 |
| BstACI | GRCGYC | 1 cut(s) | 469 |
| BstC8I | GCNNGC | 1 cut(s) | 676 |
| BstDEI | CTNAG | 2 cut(s) | 294, 491 |
| BstDSI | CCRYGG | 1 cut(s) | 414 |
| BstF5I | GGATG | 2 cut(s) | 22, 384 |
| BstH2I | RGCGCY | 2 cut(s) | 472, 545 |
| BstHHI | GCGC | 2 cut(s) | 471, 544 |
| BstKTI | GATC | 6 cut(s) | 231, 330, 413, 601, 697, 709 |
| BstMAI | GTCTC | 1 cut(s) | 76 |
| BstMBI | GATC | 6 cut(s) | 228, 327, 410, 598, 694, 706 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 475, 650, 671 |
| BstSFI | CTRYAG | 1 cut(s) | 318 |
| BstSLI | GKGCMC | 2 cut(s) | 457, 610 |
| BstV2I | GAAGAC | 2 cut(s) | 57, 260 |
| BstX2I | RGATCY | 1 cut(s) | 410 |
| BstYI | RGATCY | 1 cut(s) | 410 |
| Bsu15I | ATCGAT | 1 cut(s) | 309 |
| Bsu36I | CCTNAGG | 1 cut(s) | 491 |
| BsuI | GTATCC | 1 cut(s) | 490 |
| BsuRI | GGCC | 1 cut(s) | 455 |
| BsuTUI | ATCGAT | 1 cut(s) | 309 |
| BtgI | CCRYGG | 1 cut(s) | 414 |
| BtgZI | GCGATG | 1 cut(s) | 254 |
| BtsCI | GGATG | 2 cut(s) | 22, 384 |
| Cac8I | GCNNGC | 1 cut(s) | 676 |
| CciI | TCATGA | 1 cut(s) | 340 |
| CfoI | GCGC | 2 cut(s) | 471, 544 |
| Cfr13I | GGNCC | 3 cut(s) | 453, 454, 515 |
| ClaI | ATCGAT | 1 cut(s) | 309 |
| CviAII | CATG | 2 cut(s) | 341, 377 |
| CviJI | RGCY | 6 cut(s) | 141, 346, 356, 455, 623, 674 |
| CviKI_1 | RGCY | 6 cut(s) | 141, 346, 356, 455, 623, 674 |
| DdeI | CTNAG | 2 cut(s) | 294, 491 |
| DinI | GGCGCC | 1 cut(s) | 470 |
| DpnI | GATC | 6 cut(s) | 230, 329, 412, 600, 696, 708 |
| DpnII | GATC | 6 cut(s) | 228, 327, 410, 598, 694, 706 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 513 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 513 |
| Ecl136II | GAGCTC | 2 cut(s) | 346, 623 |
| Eco24I | GRGCYC | 3 cut(s) | 348, 457, 625 |
| Eco31I | GGTCTC | 1 cut(s) | 76 |
| Eco47I | GGWCC | 1 cut(s) | 515 |
| Eco53kI | GAGCTC | 2 cut(s) | 346, 623 |
| Eco81I | CCTNAGG | 1 cut(s) | 491 |
| EcoICRI | GAGCTC | 2 cut(s) | 346, 623 |
| EcoO109I | RGGNCCY | 1 cut(s) | 454 |
| EcoT38I | GRGCYC | 3 cut(s) | 348, 457, 625 |
| EgeI | GGCGCC | 1 cut(s) | 470 |
| EheI | GGCGCC | 1 cut(s) | 470 |
| FaeI | CATG | 2 cut(s) | 344, 380 |
| FatI | CATG | 2 cut(s) | 340, 376 |
| FauNDI | CATATG | 2 cut(s) | 12, 614 |
| FbaI | TGATCA | 1 cut(s) | 598 |
| FokI | GGATG | 2 cut(s) | 29, 371 |
| FriOI | GRGCYC | 3 cut(s) | 348, 457, 625 |
| FspBI | CTAG | 2 cut(s) | 122, 710 |
| GlaI | GCGC | 2 cut(s) | 470, 543 |
| GsuI | CTGGAG | 1 cut(s) | 11 |
| HaeII | RGCGCY | 2 cut(s) | 472, 545 |
| HaeIII | GGCC | 1 cut(s) | 455 |
| HhaI | GCGC | 2 cut(s) | 471, 544 |
| Hin1I | GRCGYC | 1 cut(s) | 469 |
| Hin1II | CATG | 2 cut(s) | 344, 380 |
| Hin6I | GCGC | 2 cut(s) | 469, 542 |
| HinP1I | GCGC | 2 cut(s) | 469, 542 |
| HinfI | GANTC | 6 cut(s) | 4, 20, 104, 256, 306, 437 |
| HphI | GGTGA | 1 cut(s) | 631 |
| Hpy188I | TCNGA | 2 cut(s) | 184, 598 |
| HpyAV | CCTTC | 2 cut(s) | 277, 459 |
| HpyCH4IV | ACGT | 1 cut(s) | 96 |
| HpyCH4V | TGCA | 3 cut(s) | 195, 281, 320 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 475, 650, 671 |
| HpyF3I | CTNAG | 2 cut(s) | 294, 491 |
| HpySE526I | ACGT | 1 cut(s) | 96 |
| Hsp92I | GRCGYC | 1 cut(s) | 469 |
| Hsp92II | CATG | 2 cut(s) | 344, 380 |
| HspAI | GCGC | 2 cut(s) | 469, 542 |
| KasI | GGCGCC | 1 cut(s) | 468 |
| Ksp22I | TGATCA | 1 cut(s) | 598 |
| Kzo9I | GATC | 6 cut(s) | 228, 327, 410, 598, 694, 706 |
| LmnI | GCTCC | 2 cut(s) | 30, 353 |
| LpnPI | CCDG | 7 cut(s) | 41, 70, 122, 129, 306, 447, 489 |
| MaeI | CTAG | 2 cut(s) | 122, 710 |
| MaeII | ACGT | 1 cut(s) | 96 |
| MaeIII | GTNAC | 3 cut(s) | 101, 313, 637 |
| MalI | GATC | 6 cut(s) | 230, 329, 412, 600, 696, 708 |
| MboI | GATC | 6 cut(s) | 228, 327, 410, 598, 694, 706 |
| MboII | GAAGA | 7 cut(s) | 59, 62, 265, 406, 641, 704, 713 |
| MflI | RGATCY | 1 cut(s) | 410 |
| MhlI | GDGCHC | 4 cut(s) | 348, 457, 610, 625 |
| MluCI | AATT | 3 cut(s) | 212, 403, 442 |
| Mly113I | GGCGCC | 1 cut(s) | 469 |
| MlyI | GAGTC | 2 cut(s) | 98, 250 |
| MnlI | CCTC | 2 cut(s) | 152, 555 |
| MseI | TTAA | 2 cut(s) | 198, 206 |
| MslI | CAYNNNNRTG | 3 cut(s) | 15, 389, 613 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 475, 650, 671 |
| NarI | GGCGCC | 1 cut(s) | 469 |
| NdeI | CATATG | 2 cut(s) | 12, 614 |
| NdeII | GATC | 6 cut(s) | 228, 327, 410, 598, 694, 706 |
| NlaIII | CATG | 2 cut(s) | 344, 380 |
| NlaIV | GGNNCC | 3 cut(s) | 455, 456, 470 |
| NmuCI | GTSAC | 2 cut(s) | 101, 637 |
| PagI | TCATGA | 1 cut(s) | 340 |
| PfeI | GAWTC | 3 cut(s) | 20, 306, 437 |
| PleI | GAGTC | 2 cut(s) | 98, 250 |
| PluTI | GGCGCC | 1 cut(s) | 472 |
| PpsI | GAGTC | 2 cut(s) | 98, 250 |
| Psp124BI | GAGCTC | 2 cut(s) | 348, 625 |
| PspN4I | GGNNCC | 3 cut(s) | 455, 456, 470 |
| PspOMI | GGGCCC | 1 cut(s) | 453 |
| PspPI | GGNCC | 3 cut(s) | 453, 454, 515 |
| PstI | CTGCAG | 1 cut(s) | 322 |
| PsuI | RGATCY | 1 cut(s) | 410 |
| RseI | CAYNNNNRTG | 3 cut(s) | 15, 389, 613 |
| SacI | GAGCTC | 2 cut(s) | 348, 625 |
| SaqAI | TTAA | 2 cut(s) | 198, 206 |
| Sau3AI | GATC | 6 cut(s) | 228, 327, 410, 598, 694, 706 |
| Sau96I | GGNCC | 3 cut(s) | 453, 454, 515 |
| SchI | GAGTC | 2 cut(s) | 98, 250 |
| SduI | GDGCHC | 4 cut(s) | 348, 457, 610, 625 |
| SfcI | CTRYAG | 1 cut(s) | 318 |
| SfoI | GGCGCC | 1 cut(s) | 470 |
| SinI | GGWCC | 1 cut(s) | 515 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 15, 389, 613 |
| Sse9I | AATT | 3 cut(s) | 212, 403, 442 |
| SsiI | CCGC | 2 cut(s) | 145, 642 |
| SspDI | GGCGCC | 1 cut(s) | 468 |
| SspMI | CTAG | 2 cut(s) | 122, 710 |
| SstI | GAGCTC | 2 cut(s) | 348, 625 |
| TaiI | ACGT | 1 cut(s) | 99 |
| TaqI | TCGA | 4 cut(s) | 304, 309, 407, 583 |
| TasI | AATT | 3 cut(s) | 212, 403, 442 |
| TfiI | GAWTC | 3 cut(s) | 20, 306, 437 |
| Tru1I | TTAA | 2 cut(s) | 198, 206 |
| Tru9I | TTAA | 2 cut(s) | 198, 206 |
| TseFI | GTSAC | 2 cut(s) | 101, 637 |
| Tsp45I | GTSAC | 2 cut(s) | 101, 637 |
| TspDTI | ATGAA | 4 cut(s) | 56, 60, 329, 374 |
| TspGWI | ACGGA | 3 cut(s) | 89, 340, 403 |
| VpaK11BI | GGWCC | 1 cut(s) | 515 |
| XapI | RAATTY | 1 cut(s) | 212 |
| XbaI | TCTAGA | 1 cut(s) | 709 |
| XspI | CTAG | 2 cut(s) | 122, 710 |