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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 615 |
| AciI | CCGC | 2 cut(s) | 79, 361 |
| AclWI | GGATC | 2 cut(s) | 482, 552 |
| AcyI | GRCGYC | 1 cut(s) | 616 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 611 |
| AjiI | CACGTC | 1 cut(s) | 136 |
| AjnI | CCWGG | 1 cut(s) | 129 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 288, 320 |
| AluBI | AGCT | 4 cut(s) | 155, 161, 493, 503 |
| AluI | AGCT | 4 cut(s) | 155, 161, 493, 503 |
| Alw21I | GWGCWC | 2 cut(s) | 495, 604 |
| Alw26I | GTCTC | 3 cut(s) | 104, 292, 427 |
| AlwI | GGATC | 2 cut(s) | 482, 552 |
| Ama87I | CYCGRG | 1 cut(s) | 119 |
| ApeKI | GCWGC | 1 cut(s) | 179 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 576 |
| AspLEI | GCGC | 1 cut(s) | 618 |
| AsuC2I | CCSGG | 1 cut(s) | 107 |
| AvaI | CYCGRG | 1 cut(s) | 119 |
| BanI | GGYRCC | 1 cut(s) | 615 |
| BanII | GRGCYC | 1 cut(s) | 495 |
| BauI | CACGAG | 1 cut(s) | 488 |
| BbsI | GAAGAC | 2 cut(s) | 273, 407 |
| Bbv12I | GWGCWC | 2 cut(s) | 495, 604 |
| BbvI | GCAGC | 1 cut(s) | 191 |
| BccI | CCATC | 5 cut(s) | 57, 92, 215, 342, 427 |
| BciT130I | CCWGG | 1 cut(s) | 131 |
| BcnI | CCSGG | 1 cut(s) | 107 |
| BcoDI | GTCTC | 3 cut(s) | 104, 292, 427 |
| BfaI | CTAG | 2 cut(s) | 126, 338 |
| BfoI | RGCGCY | 1 cut(s) | 619 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 188 |
| BisI | GCNGC | 1 cut(s) | 180 |
| BlsI | GCNGC | 1 cut(s) | 181 |
| Bme1390I | CCNGG | 2 cut(s) | 107, 131 |
| BmeT110I | CYCGRG | 1 cut(s) | 119 |
| BmgBI | CACGTC | 1 cut(s) | 136 |
| BmiI | GGNNCC | 1 cut(s) | 617 |
| BmrFI | CCNGG | 2 cut(s) | 107, 131 |
| BmsI | GCATC | 1 cut(s) | 94 |
| BpiI | GAAGAC | 2 cut(s) | 273, 407 |
| BpuEI | CTTGAG | 2 cut(s) | 74, 141 |
| BpuMI | CCSGG | 1 cut(s) | 107 |
| BsaHI | GRCGYC | 1 cut(s) | 616 |
| BsaI | GGTCTC | 1 cut(s) | 292 |
| BsaJI | CCNNGG | 1 cut(s) | 561 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 611 |
| Bse1I | ACTGG | 1 cut(s) | 49 |
| BseBI | CCWGG | 1 cut(s) | 131 |
| BseDI | CCNNGG | 1 cut(s) | 561 |
| BseGI | GGATG | 3 cut(s) | 210, 238, 531 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 611 |
| BseNI | ACTGG | 1 cut(s) | 49 |
| BseXI | GCAGC | 1 cut(s) | 191 |
| BshNI | GGYRCC | 1 cut(s) | 615 |
| BsiHKAI | GWGCWC | 2 cut(s) | 495, 604 |
| BsiHKCI | CYCGRG | 1 cut(s) | 119 |
| BsiSI | CCGG | 1 cut(s) | 107 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 611 |
| BsmAI | GTCTC | 3 cut(s) | 104, 292, 427 |
| BsmBI | CGTCTC | 2 cut(s) | 104, 427 |
| Bso31I | GGTCTC | 1 cut(s) | 292 |
| BsoBI | CYCGRG | 1 cut(s) | 119 |
| Bsp1286I | GDGCHC | 2 cut(s) | 495, 604 |
| Bsp143I | GATC | 3 cut(s) | 375, 474, 557 |
| BspACI | CCGC | 2 cut(s) | 79, 361 |
| BspLI | GGNNCC | 1 cut(s) | 617 |
| BspPI | GGATC | 2 cut(s) | 482, 552 |
| BspT107I | GGYRCC | 1 cut(s) | 615 |
| BspTNI | GGTCTC | 1 cut(s) | 292 |
| BsrI | ACTGG | 1 cut(s) | 49 |
| BssECI | CCNNGG | 1 cut(s) | 561 |
| BssMI | GATC | 3 cut(s) | 375, 474, 557 |
| BssNI | GRCGYC | 1 cut(s) | 616 |
| BssSI | CACGAG | 1 cut(s) | 488 |
| Bst2BI | CACGAG | 1 cut(s) | 488 |
| Bst2UI | CCWGG | 1 cut(s) | 131 |
| Bst4CI | ACNGT | 1 cut(s) | 145 |
| BstACI | GRCGYC | 1 cut(s) | 616 |
| BstC8I | GCNNGC | 2 cut(s) | 83, 153 |
| BstDEI | CTNAG | 2 cut(s) | 184, 441 |
| BstDSI | CCRYGG | 1 cut(s) | 561 |
| BstF5I | GGATG | 3 cut(s) | 210, 238, 531 |
| BstH2I | RGCGCY | 1 cut(s) | 619 |
| BstHHI | GCGC | 1 cut(s) | 618 |
| BstKTI | GATC | 3 cut(s) | 378, 477, 560 |
| BstMAI | GTCTC | 3 cut(s) | 104, 292, 427 |
| BstMBI | GATC | 3 cut(s) | 375, 474, 557 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 167, 176, 188, 197 |
| BstNI | CCWGG | 1 cut(s) | 131 |
| BstSCI | CCNGG | 2 cut(s) | 105, 129 |
| BstV1I | GCAGC | 1 cut(s) | 191 |
| BstV2I | GAAGAC | 2 cut(s) | 273, 407 |
| BstX2I | RGATCY | 1 cut(s) | 557 |
| BstYI | RGATCY | 1 cut(s) | 557 |
| BtgI | CCRYGG | 1 cut(s) | 561 |
| BtgZI | GCGATG | 1 cut(s) | 401 |
| BtrI | CACGTC | 1 cut(s) | 136 |
| BtsCI | GGATG | 3 cut(s) | 210, 238, 531 |
| Cac8I | GCNNGC | 2 cut(s) | 83, 153 |
| CfoI | GCGC | 1 cut(s) | 618 |
| CviAII | CATG | 1 cut(s) | 524 |
| DdeI | CTNAG | 2 cut(s) | 184, 441 |
| DinI | GGCGCC | 1 cut(s) | 617 |
| DpnI | GATC | 3 cut(s) | 377, 476, 559 |
| DpnII | GATC | 3 cut(s) | 375, 474, 557 |
| EciI | GGCGGA | 1 cut(s) | 68 |
| Ecl136II | GAGCTC | 1 cut(s) | 493 |
| Eco24I | GRGCYC | 1 cut(s) | 495 |
| Eco31I | GGTCTC | 1 cut(s) | 292 |
| Eco32I | GATATC | 1 cut(s) | 56 |
| Eco53kI | GAGCTC | 1 cut(s) | 493 |
| Eco88I | CYCGRG | 1 cut(s) | 119 |
| EcoICRI | GAGCTC | 1 cut(s) | 493 |
| EcoRII | CCWGG | 1 cut(s) | 129 |
| EcoRV | GATATC | 1 cut(s) | 56 |
| EcoT38I | GRGCYC | 1 cut(s) | 495 |
| EgeI | GGCGCC | 1 cut(s) | 617 |
| EheI | GGCGCC | 1 cut(s) | 617 |
| Esp3I | CGTCTC | 2 cut(s) | 104, 427 |
| FaeI | CATG | 1 cut(s) | 527 |
| FatI | CATG | 1 cut(s) | 523 |
| FauNDI | CATATG | 1 cut(s) | 228 |
| Fnu4HI | GCNGC | 1 cut(s) | 180 |
| FokI | GGATG | 3 cut(s) | 197, 245, 518 |
| FriOI | GRGCYC | 1 cut(s) | 495 |
| Fsp4HI | GCNGC | 1 cut(s) | 180 |
| FspBI | CTAG | 2 cut(s) | 126, 338 |
| GlaI | GCGC | 1 cut(s) | 617 |
| GluI | GCNGC | 1 cut(s) | 180 |
| HaeII | RGCGCY | 1 cut(s) | 619 |
| HapII | CCGG | 1 cut(s) | 107 |
| HhaI | GCGC | 1 cut(s) | 618 |
| Hin1I | GRCGYC | 1 cut(s) | 616 |
| Hin1II | CATG | 1 cut(s) | 527 |
| Hin6I | GCGC | 1 cut(s) | 616 |
| HinP1I | GCGC | 1 cut(s) | 616 |
| HindIII | AAGCTT | 1 cut(s) | 159 |
| HinfI | GANTC | 7 cut(s) | 102, 115, 220, 236, 320, 403, 584 |
| HpaII | CCGG | 1 cut(s) | 107 |
| Hpy188III | TCNNGA | 6 cut(s) | 71, 119, 332, 488, 555, 581 |
| HpyAV | CCTTC | 2 cut(s) | 270, 424 |
| HpyCH4III | ACNGT | 1 cut(s) | 145 |
| HpyCH4IV | ACGT | 2 cut(s) | 135, 312 |
| HpyCH4V | TGCA | 2 cut(s) | 428, 467 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 167, 176, 188, 197 |
| HpyF3I | CTNAG | 2 cut(s) | 184, 441 |
| HpySE526I | ACGT | 2 cut(s) | 135, 312 |
| Hsp92I | GRCGYC | 1 cut(s) | 616 |
| Hsp92II | CATG | 1 cut(s) | 527 |
| HspAI | GCGC | 1 cut(s) | 616 |
| KasI | GGCGCC | 1 cut(s) | 615 |
| Kzo9I | GATC | 3 cut(s) | 375, 474, 557 |
| LmnI | GCTCC | 3 cut(s) | 34, 500, 607 |
| Lsp1109I | GCAGC | 1 cut(s) | 191 |
| LweI | GCATC | 1 cut(s) | 94 |
| MaeI | CTAG | 2 cut(s) | 126, 338 |
| MaeII | ACGT | 2 cut(s) | 135, 312 |
| MaeIII | GTNAC | 2 cut(s) | 5, 317 |
| MalI | GATC | 3 cut(s) | 377, 476, 559 |
| MboI | GATC | 3 cut(s) | 375, 474, 557 |
| MboII | GAAGA | 5 cut(s) | 275, 278, 308, 412, 553 |
| MflI | RGATCY | 1 cut(s) | 557 |
| MhlI | GDGCHC | 2 cut(s) | 495, 604 |
| MluCI | AATT | 4 cut(s) | 17, 453, 550, 589 |
| Mly113I | GGCGCC | 1 cut(s) | 616 |
| MlyI | GAGTC | 3 cut(s) | 214, 314, 397 |
| MnlI | CCTC | 3 cut(s) | 181, 368, 605 |
| MroXI | GAANNNNTTC | 1 cut(s) | 576 |
| MslI | CAYNNNNRTG | 3 cut(s) | 215, 231, 536 |
| MspI | CCGG | 1 cut(s) | 107 |
| MspR9I | CCNGG | 2 cut(s) | 107, 131 |
| MvaI | CCWGG | 1 cut(s) | 131 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 167, 176, 188, 197 |
| NarI | GGCGCC | 1 cut(s) | 616 |
| NciI | CCSGG | 1 cut(s) | 107 |
| NdeI | CATATG | 1 cut(s) | 228 |
| NdeII | GATC | 3 cut(s) | 375, 474, 557 |
| NlaIII | CATG | 1 cut(s) | 527 |
| NlaIV | GGNNCC | 1 cut(s) | 617 |
| NmuCI | GTSAC | 1 cut(s) | 317 |
| PaeR7I | CTCGAG | 1 cut(s) | 119 |
| PdmI | GAANNNNTTC | 1 cut(s) | 576 |
| PfeI | GAWTC | 4 cut(s) | 102, 115, 236, 584 |
| PfoI | TCCNGGA | 1 cut(s) | 105 |
| PkrI | GCNGC | 1 cut(s) | 181 |
| PleI | GAGTC | 3 cut(s) | 214, 314, 397 |
| PluTI | GGCGCC | 1 cut(s) | 619 |
| PpsI | GAGTC | 3 cut(s) | 214, 314, 397 |
| Psp124BI | GAGCTC | 1 cut(s) | 495 |
| Psp6I | CCWGG | 1 cut(s) | 129 |
| PspGI | CCWGG | 1 cut(s) | 129 |
| PspN4I | GGNNCC | 1 cut(s) | 617 |
| PsuI | RGATCY | 1 cut(s) | 557 |
| RseI | CAYNNNNRTG | 3 cut(s) | 215, 231, 536 |
| SacI | GAGCTC | 1 cut(s) | 495 |
| SatI | GCNGC | 1 cut(s) | 180 |
| Sau3AI | GATC | 3 cut(s) | 375, 474, 557 |
| SchI | GAGTC | 3 cut(s) | 214, 314, 397 |
| ScrFI | CCNGG | 2 cut(s) | 107, 131 |
| SduI | GDGCHC | 2 cut(s) | 495, 604 |
| SetI | ASST | 9 cut(s) | 12, 138, 157, 163, 315, 339, 416, 495, 505 |
| SfaNI | GCATC | 1 cut(s) | 94 |
| SfoI | GGCGCC | 1 cut(s) | 617 |
| Sfr274I | CTCGAG | 1 cut(s) | 119 |
| SlaI | CTCGAG | 1 cut(s) | 119 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 215, 231, 536 |
| SmlI | CTYRAG | 3 cut(s) | 89, 119, 156 |
| SmoI | CTYRAG | 3 cut(s) | 89, 119, 156 |
| Sse9I | AATT | 4 cut(s) | 17, 453, 550, 589 |
| SsiI | CCGC | 2 cut(s) | 79, 361 |
| SspDI | GGCGCC | 1 cut(s) | 615 |
| SspMI | CTAG | 2 cut(s) | 126, 338 |
| SstI | GAGCTC | 1 cut(s) | 495 |
| StyD4I | CCNGG | 2 cut(s) | 105, 129 |
| TaaI | ACNGT | 1 cut(s) | 145 |
| TaiI | ACGT | 2 cut(s) | 138, 315 |
| TaqI | TCGA | 4 cut(s) | 120, 294, 451, 554 |
| TasI | AATT | 4 cut(s) | 17, 453, 550, 589 |
| TfiI | GAWTC | 4 cut(s) | 102, 115, 236, 584 |
| TseFI | GTSAC | 1 cut(s) | 317 |
| TseI | GCWGC | 1 cut(s) | 179 |
| Tsp45I | GTSAC | 1 cut(s) | 317 |
| TspDTI | ATGAA | 3 cut(s) | 272, 276, 521 |
| TspGWI | ACGGA | 3 cut(s) | 305, 487, 550 |
| XhoI | CTCGAG | 1 cut(s) | 119 |
| XmnI | GAANNNNTTC | 1 cut(s) | 576 |
| XspI | CTAG | 2 cut(s) | 126, 338 |