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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1063 |
| AccB1I | GGYRCC | 2 cut(s) | 1014, 1328 |
| AccII | CGCG | 2 cut(s) | 687, 1318 |
| AccIII | TCCGGA | 2 cut(s) | 466, 1094 |
| AciI | CCGC | 5 cut(s) | 94, 140, 809, 820, 1408 |
| AclI | AACGTT | 1 cut(s) | 760 |
| AclWI | GGATC | 5 cut(s) | 171, 184, 293, 1385, 1531 |
| AcoI | YGGCCR | 3 cut(s) | 34, 54, 881 |
| AcsI | RAATTY | 1 cut(s) | 1169 |
| AcuI | CTGAAG | 1 cut(s) | 82 |
| AcyI | GRCGYC | 2 cut(s) | 1015, 1329 |
| AfaI | GTAC | 2 cut(s) | 452, 1406 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 32, 186, 313, 533, 710, 1125 |
| AflII | CTTAAG | 1 cut(s) | 558 |
| AflIII | ACRYGT | 2 cut(s) | 1244, 1401 |
| AgeI | ACCGGT | 2 cut(s) | 186, 207 |
| AgsI | TTSAA | 5 cut(s) | 357, 491, 636, 835, 955 |
| AjiI | CACGTC | 3 cut(s) | 404, 427, 440 |
| AjnI | CCWGG | 2 cut(s) | 172, 179 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 594, 626 |
| AluBI | AGCT | 8 cut(s) | 159, 462, 624, 648, 728, 849, 1007, 1029 |
| AluI | AGCT | 8 cut(s) | 159, 462, 624, 648, 728, 849, 1007, 1029 |
| Alw21I | GWGCWC | 3 cut(s) | 610, 1009, 1226 |
| Alw26I | GTCTC | 4 cut(s) | 380, 501, 868, 941 |
| Alw44I | GTGCAC | 1 cut(s) | 1222 |
| AlwI | GGATC | 5 cut(s) | 171, 184, 293, 1385, 1531 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 378 |
| Ama87I | CYCGRG | 2 cut(s) | 411, 504 |
| Aor13HI | TCCGGA | 2 cut(s) | 466, 1094 |
| AoxI | GGCC | 6 cut(s) | 34, 54, 76, 315, 337, 881 |
| ApaLI | GTGCAC | 1 cut(s) | 1222 |
| ApeKI | GCWGC | 3 cut(s) | 365, 420, 746 |
| ApoI | RAATTY | 1 cut(s) | 1169 |
| AsiGI | ACCGGT | 2 cut(s) | 186, 207 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 850 |
| AspLEI | GCGC | 6 cut(s) | 519, 550, 689, 1017, 1320, 1331 |
| AspS9I | GGNCC | 5 cut(s) | 77, 316, 338, 1176, 1343 |
| AsuHPI | GGTGA | 2 cut(s) | 129, 232 |
| AvaI | CYCGRG | 2 cut(s) | 411, 504 |
| AvaII | GGWCC | 2 cut(s) | 1176, 1343 |
| BaeGI | GKGCMC | 1 cut(s) | 1226 |
| BalI | TGGCCA | 1 cut(s) | 883 |
| BamHI | GGATCC | 1 cut(s) | 176 |
| BanI | GGYRCC | 2 cut(s) | 1014, 1328 |
| BanII | GRGCYC | 1 cut(s) | 1009 |
| BbsI | GAAGAC | 3 cut(s) | 721, 921, 1519 |
| Bbv12I | GWGCWC | 3 cut(s) | 610, 1009, 1226 |
| BbvI | GCAGC | 3 cut(s) | 377, 432, 758 |
| BccI | CCATC | 5 cut(s) | 561, 591, 790, 863, 1482 |
| BciT130I | CCWGG | 2 cut(s) | 174, 181 |
| BciVI | GTATCC | 1 cut(s) | 516 |
| BcoDI | GTCTC | 4 cut(s) | 380, 501, 868, 941 |
| BfaI | CTAG | 4 cut(s) | 595, 1069, 1497, 1540 |
| BfmI | CTRYAG | 1 cut(s) | 370 |
| BfoI | RGCGCY | 2 cut(s) | 1018, 1332 |
| BfrI | CTTAAG | 1 cut(s) | 558 |
| BfuI | GTATCC | 1 cut(s) | 516 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1326 |
| BglII | AGATCT | 1 cut(s) | 1499 |
| BisI | GCNGC | 3 cut(s) | 366, 421, 747 |
| BlsI | GCNGC | 3 cut(s) | 367, 422, 748 |
| Bme1390I | CCNGG | 2 cut(s) | 174, 181 |
| Bme18I | GGWCC | 2 cut(s) | 1176, 1343 |
| BmeT110I | CYCGRG | 2 cut(s) | 411, 504 |
| BmgBI | CACGTC | 3 cut(s) | 404, 427, 440 |
| BmgT120I | GGNCC | 5 cut(s) | 77, 316, 338, 1176, 1343 |
| BmiI | GGNNCC | 8 cut(s) | 79, 178, 185, 206, 1016, 1330, 1344, 1345 |
| BmrFI | CCNGG | 2 cut(s) | 174, 181 |
| BmsI | GCATC | 3 cut(s) | 126, 274, 406 |
| BpiI | GAAGAC | 3 cut(s) | 721, 921, 1519 |
| BpmI | CTGGAG | 1 cut(s) | 266 |
| BpuEI | CTTGAG | 1 cut(s) | 762 |
| BsaBI | GATNNNNATC | 4 cut(s) | 906, 1376, 1492, 1498 |
| BsaHI | GRCGYC | 2 cut(s) | 1015, 1329 |
| BsaJI | CCNNGG | 5 cut(s) | 172, 334, 410, 1075, 1232 |
| BsaWI | WCCGGW | 4 cut(s) | 186, 207, 466, 1094 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 594, 624 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 32, 186, 313, 533, 710, 1125 |
| Bse118I | RCCGGY | 6 cut(s) | 11, 32, 52, 74, 186, 207 |
| Bse1I | ACTGG | 3 cut(s) | 283, 448, 518 |
| Bse8I | GATNNNNATC | 4 cut(s) | 906, 1376, 1492, 1498 |
| BseAI | TCCGGA | 2 cut(s) | 466, 1094 |
| BseBI | CCWGG | 2 cut(s) | 174, 181 |
| BseDI | CCNNGG | 5 cut(s) | 172, 334, 410, 1075, 1232 |
| BseGI | GGATG | 4 cut(s) | 117, 397, 475, 583 |
| BseJI | GATNNNNATC | 4 cut(s) | 906, 1376, 1492, 1498 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 32, 186, 313, 533, 710, 1125 |
| BseNI | ACTGG | 3 cut(s) | 283, 448, 518 |
| BseSI | GKGCMC | 1 cut(s) | 1226 |
| BseX3I | CGGCCG | 1 cut(s) | 34 |
| BseXI | GCAGC | 3 cut(s) | 377, 432, 758 |
| BseYI | CCCAGC | 1 cut(s) | 361 |
| BsgI | GTGCAG | 1 cut(s) | 925 |
| Bsh1236I | CGCG | 2 cut(s) | 687, 1318 |
| Bsh1285I | CGRYCG | 2 cut(s) | 37, 212 |
| BshFI | GGCC | 6 cut(s) | 36, 56, 78, 317, 339, 883 |
| BshNI | GGYRCC | 2 cut(s) | 1014, 1328 |
| BshTI | ACCGGT | 2 cut(s) | 186, 207 |
| BsiEI | CGRYCG | 2 cut(s) | 37, 212 |
| BsiHKAI | GWGCWC | 3 cut(s) | 610, 1009, 1226 |
| BsiHKCI | CYCGRG | 2 cut(s) | 411, 504 |
| BsiSI | CCGG | 9 cut(s) | 12, 33, 37, 53, 75, 187, 208, 467, 1095 |
| BslFI | GGGAC | 2 cut(s) | 1170, 1356 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 32, 186, 313, 533, 710, 1125 |
| BsmAI | GTCTC | 4 cut(s) | 380, 501, 868, 941 |
| BsmBI | CGTCTC | 1 cut(s) | 941 |
| BsmFI | GGGAC | 2 cut(s) | 1170, 1356 |
| BsnI | GGCC | 6 cut(s) | 36, 56, 78, 317, 339, 883 |
| BsoBI | CYCGRG | 2 cut(s) | 411, 504 |
| Bsp1286I | GDGCHC | 3 cut(s) | 610, 1009, 1226 |
| Bsp13I | TCCGGA | 2 cut(s) | 466, 1094 |
| BspACI | CCGC | 5 cut(s) | 94, 140, 809, 820, 1408 |
| BspANI | GGCC | 6 cut(s) | 36, 56, 78, 317, 339, 883 |
| BspEI | TCCGGA | 2 cut(s) | 466, 1094 |
| BspFNI | CGCG | 2 cut(s) | 687, 1318 |
| BspHI | TCATGA | 2 cut(s) | 664, 1001 |
| BspLI | GGNNCC | 8 cut(s) | 79, 178, 185, 206, 1016, 1330, 1344, 1345 |
| BspMAI | CTGCAG | 1 cut(s) | 374 |
| BspPI | GGATC | 5 cut(s) | 171, 184, 293, 1385, 1531 |
| BspQI | GCTCTTC | 1 cut(s) | 856 |
| BspT107I | GGYRCC | 2 cut(s) | 1014, 1328 |
| BspTI | CTTAAG | 1 cut(s) | 558 |
| BsrFI | RCCGGY | 6 cut(s) | 11, 32, 52, 74, 186, 207 |
| BsrI | ACTGG | 3 cut(s) | 283, 448, 518 |
| BssAI | RCCGGY | 6 cut(s) | 11, 32, 52, 74, 186, 207 |
| BssECI | CCNNGG | 5 cut(s) | 172, 334, 410, 1075, 1232 |
| BssNI | GRCGYC | 2 cut(s) | 1015, 1329 |
| BssT1I | CCWWGG | 1 cut(s) | 334 |
| Bst2UI | CCWGG | 2 cut(s) | 174, 181 |
| Bst4CI | ACNGT | 1 cut(s) | 1233 |
| Bst6I | CTCTTC | 2 cut(s) | 856, 1245 |
| BstACI | GRCGYC | 2 cut(s) | 1015, 1329 |
| BstAFI | CTTAAG | 1 cut(s) | 558 |
| BstC8I | GCNNGC | 6 cut(s) | 370, 395, 434, 622, 1187, 1222 |
| BstDEI | CTNAG | 3 cut(s) | 1084, 1147, 1503 |
| BstDSI | CCRYGG | 2 cut(s) | 1075, 1232 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 708 |
| BstF5I | GGATG | 4 cut(s) | 117, 397, 475, 583 |
| BstFNI | CGCG | 2 cut(s) | 687, 1318 |
| BstH2I | RGCGCY | 2 cut(s) | 1018, 1332 |
| BstHHI | GCGC | 6 cut(s) | 519, 550, 689, 1017, 1320, 1331 |
| BstMAI | GTCTC | 4 cut(s) | 380, 501, 868, 941 |
| BstMCI | CGRYCG | 2 cut(s) | 37, 212 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 394, 429, 442, 636, 645, 1326, 1458 |
| BstNI | CCWGG | 2 cut(s) | 174, 181 |
| BstNSI | RCATGY | 1 cut(s) | 1405 |
| BstSCI | CCNGG | 2 cut(s) | 172, 179 |
| BstSFI | CTRYAG | 1 cut(s) | 370 |
| BstSLI | GKGCMC | 1 cut(s) | 1226 |
| BstUI | CGCG | 2 cut(s) | 687, 1318 |
| BstV1I | GCAGC | 3 cut(s) | 377, 432, 758 |
| BstV2I | GAAGAC | 3 cut(s) | 721, 921, 1519 |
| BstX2I | RGATCY | 2 cut(s) | 176, 1499 |
| BstYI | RGATCY | 2 cut(s) | 176, 1499 |
| BstZI | CGGCCG | 1 cut(s) | 34 |
| BsuI | GTATCC | 1 cut(s) | 516 |
| BsuRI | GGCC | 6 cut(s) | 36, 56, 78, 317, 339, 883 |
| BtgI | CCRYGG | 2 cut(s) | 1075, 1232 |
| BtgZI | GCGATG | 1 cut(s) | 809 |
| BtrI | CACGTC | 3 cut(s) | 404, 427, 440 |
| BtsCI | GGATG | 4 cut(s) | 117, 397, 475, 583 |
| BtsIMutI | CAGTG | 1 cut(s) | 942 |
| Cac8I | GCNNGC | 6 cut(s) | 370, 395, 434, 622, 1187, 1222 |
| CaiI | CAGNNNCTG | 1 cut(s) | 378 |
| CciI | TCATGA | 2 cut(s) | 664, 1001 |
| CfoI | GCGC | 6 cut(s) | 519, 550, 689, 1017, 1320, 1331 |
| Cfr10I | RCCGGY | 6 cut(s) | 11, 32, 52, 74, 186, 207 |
| Cfr13I | GGNCC | 5 cut(s) | 77, 316, 338, 1176, 1343 |
| CseI | GACGC | 3 cut(s) | 26, 693, 1138 |
| Csp6I | GTAC | 2 cut(s) | 451, 1405 |
| CspAI | ACCGGT | 2 cut(s) | 186, 207 |
| CviAII | CATG | 8 cut(s) | 665, 677, 1002, 1019, 1339, 1402, 1469, 1520 |
| CviQI | GTAC | 2 cut(s) | 451, 1405 |
| DdeI | CTNAG | 3 cut(s) | 1084, 1147, 1503 |
| DinI | GGCGCC | 2 cut(s) | 1016, 1330 |
| EaeI | YGGCCR | 3 cut(s) | 34, 54, 881 |
| EagI | CGGCCG | 1 cut(s) | 34 |
| Eam1104I | CTCTTC | 2 cut(s) | 856, 1245 |
| EarI | CTCTTC | 2 cut(s) | 856, 1245 |
| EciI | GGCGGA | 1 cut(s) | 83 |
| Ecl136II | GAGCTC | 1 cut(s) | 1007 |
| EclXI | CGGCCG | 1 cut(s) | 34 |
| Eco130I | CCWWGG | 1 cut(s) | 334 |
| Eco24I | GRGCYC | 1 cut(s) | 1009 |
| Eco47I | GGWCC | 2 cut(s) | 1176, 1343 |
| Eco52I | CGGCCG | 1 cut(s) | 34 |
| Eco53kI | GAGCTC | 1 cut(s) | 1007 |
| Eco57I | CTGAAG | 1 cut(s) | 82 |
| Eco88I | CYCGRG | 2 cut(s) | 411, 504 |
| EcoICRI | GAGCTC | 1 cut(s) | 1007 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 708 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1343 |
| EcoRII | CCWGG | 2 cut(s) | 172, 179 |
| EcoT14I | CCWWGG | 1 cut(s) | 334 |
| EcoT38I | GRGCYC | 1 cut(s) | 1009 |
| EgeI | GGCGCC | 2 cut(s) | 1016, 1330 |
| EheI | GGCGCC | 2 cut(s) | 1016, 1330 |
| ErhI | CCWWGG | 1 cut(s) | 334 |
| Esp3I | CGTCTC | 1 cut(s) | 941 |
| FaeI | CATG | 8 cut(s) | 668, 680, 1005, 1022, 1342, 1405, 1472, 1523 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 477, 509 |
| FaqI | GGGAC | 2 cut(s) | 1170, 1356 |
| FatI | CATG | 8 cut(s) | 664, 676, 1001, 1018, 1338, 1401, 1468, 1519 |
| FauNDI | CATATG | 1 cut(s) | 1181 |
| Fnu4HI | GCNGC | 3 cut(s) | 366, 421, 747 |
| FokI | GGATG | 4 cut(s) | 104, 384, 482, 570 |
| FriOI | GRGCYC | 1 cut(s) | 1009 |
| Fsp4HI | GCNGC | 3 cut(s) | 366, 421, 747 |
| FspBI | CTAG | 4 cut(s) | 595, 1069, 1497, 1540 |
| GlaI | GCGC | 6 cut(s) | 518, 549, 688, 1016, 1319, 1330 |
| GluI | GCNGC | 3 cut(s) | 366, 421, 747 |
| GsaI | CCCAGC | 1 cut(s) | 365 |
| GsuI | CTGGAG | 1 cut(s) | 266 |
| HaeII | RGCGCY | 2 cut(s) | 1018, 1332 |
| HaeIII | GGCC | 6 cut(s) | 36, 56, 78, 317, 339, 883 |
| HapII | CCGG | 9 cut(s) | 12, 33, 37, 53, 75, 187, 208, 467, 1095 |
| HgaI | GACGC | 3 cut(s) | 26, 693, 1138 |
| HhaI | GCGC | 6 cut(s) | 519, 550, 689, 1017, 1320, 1331 |
| Hin1I | GRCGYC | 2 cut(s) | 1015, 1329 |
| Hin1II | CATG | 8 cut(s) | 668, 680, 1005, 1022, 1342, 1405, 1472, 1523 |
| Hin6I | GCGC | 6 cut(s) | 517, 548, 687, 1015, 1318, 1329 |
| HinP1I | GCGC | 6 cut(s) | 517, 548, 687, 1015, 1318, 1329 |
| HincII | GTYRAC | 1 cut(s) | 1242 |
| HindII | GTYRAC | 1 cut(s) | 1242 |
| HinfI | GANTC | 7 cut(s) | 2, 40, 90, 275, 768, 917, 1098 |
| HpaII | CCGG | 9 cut(s) | 12, 33, 37, 53, 75, 187, 208, 467, 1095 |
| HphI | GGTGA | 2 cut(s) | 129, 232 |
| Hpy166II | GTNNAC | 3 cut(s) | 130, 1224, 1242 |
| Hpy188I | TCNGA | 5 cut(s) | 155, 233, 868, 967, 1274 |
| Hpy8I | GTNNAC | 3 cut(s) | 130, 1224, 1242 |
| Hpy99I | CGWCG | 1 cut(s) | 20 |
| HpyAV | CCTTC | 2 cut(s) | 131, 938 |
| HpyCH4III | ACNGT | 1 cut(s) | 1233 |
| HpyCH4V | TGCA | 6 cut(s) | 265, 372, 942, 981, 1224, 1425 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 394, 429, 442, 636, 645, 1326, 1458 |
| HpyF3I | CTNAG | 3 cut(s) | 1084, 1147, 1503 |
| Hsp92I | GRCGYC | 2 cut(s) | 1015, 1329 |
| Hsp92II | CATG | 8 cut(s) | 668, 680, 1005, 1022, 1342, 1405, 1472, 1523 |
| HspAI | GCGC | 6 cut(s) | 517, 548, 687, 1015, 1318, 1329 |
| KasI | GGCGCC | 2 cut(s) | 1014, 1328 |
| KflI | GGGWCCC | 1 cut(s) | 1343 |
| Kpn2I | TCCGGA | 2 cut(s) | 466, 1094 |
| LguI | GCTCTTC | 1 cut(s) | 856 |
| LmnI | GCTCC | 2 cut(s) | 694, 1136 |
| Lsp1109I | GCAGC | 3 cut(s) | 377, 432, 758 |
| LweI | GCATC | 3 cut(s) | 126, 274, 406 |
| MaeI | CTAG | 4 cut(s) | 595, 1069, 1497, 1540 |
| MaeIII | GTNAC | 4 cut(s) | 65, 474, 765, 1284 |
| MflI | RGATCY | 2 cut(s) | 176, 1499 |
| MhlI | GDGCHC | 3 cut(s) | 610, 1009, 1226 |
| MlsI | TGGCCA | 1 cut(s) | 883 |
| MluCI | AATT | 6 cut(s) | 658, 959, 1058, 1160, 1169, 1463 |
| MluNI | TGGCCA | 1 cut(s) | 883 |
| Mly113I | GGCGCC | 2 cut(s) | 1015, 1329 |
| MlyI | GAGTC | 5 cut(s) | 11, 269, 762, 911, 1107 |
| MmeI | TCCRAC | 2 cut(s) | 1297, 1335 |
| Mox20I | TGGCCA | 1 cut(s) | 883 |
| MroI | TCCGGA | 2 cut(s) | 466, 1094 |
| MroXI | GAANNNNTTC | 1 cut(s) | 850 |
| MscI | TGGCCA | 1 cut(s) | 883 |
| MseI | TTAA | 2 cut(s) | 559, 1553 |
| MslI | CAYNNNNRTG | 1 cut(s) | 679 |
| Msp20I | TGGCCA | 1 cut(s) | 883 |
| MspCI | CTTAAG | 1 cut(s) | 558 |
| MspI | CCGG | 9 cut(s) | 12, 33, 37, 53, 75, 187, 208, 467, 1095 |
| MspR9I | CCNGG | 2 cut(s) | 174, 181 |
| MvaI | CCWGG | 2 cut(s) | 174, 181 |
| MvnI | CGCG | 2 cut(s) | 687, 1318 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 394, 429, 442, 636, 645, 1326, 1458 |
| NarI | GGCGCC | 2 cut(s) | 1015, 1329 |
| NdeI | CATATG | 1 cut(s) | 1181 |
| NlaIII | CATG | 8 cut(s) | 668, 680, 1005, 1022, 1342, 1405, 1472, 1523 |
| NlaIV | GGNNCC | 8 cut(s) | 79, 178, 185, 206, 1016, 1330, 1344, 1345 |
| NmeAIII | GCCGAG | 1 cut(s) | 1236 |
| NmuCI | GTSAC | 2 cut(s) | 65, 765 |
| NspI | RCATGY | 1 cut(s) | 1405 |
| PaeR7I | CTCGAG | 1 cut(s) | 504 |
| PagI | TCATGA | 2 cut(s) | 664, 1001 |
| PciI | ACATGT | 1 cut(s) | 1401 |
| PciSI | GCTCTTC | 1 cut(s) | 856 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1136 |
| PdmI | GAANNNNTTC | 1 cut(s) | 850 |
| PfeI | GAWTC | 2 cut(s) | 40, 90 |
| PfoI | TCCNGGA | 1 cut(s) | 179 |
| PinAI | ACCGGT | 2 cut(s) | 186, 207 |
| PkrI | GCNGC | 3 cut(s) | 367, 422, 748 |
| PleI | GAGTC | 5 cut(s) | 10, 269, 762, 911, 1106 |
| PluTI | GGCGCC | 2 cut(s) | 1018, 1332 |
| PpsI | GAGTC | 5 cut(s) | 10, 269, 762, 911, 1106 |
| PpuMI | RGGWCCY | 1 cut(s) | 1343 |
| PscI | ACATGT | 1 cut(s) | 1401 |
| PsiI | TTATAA | 1 cut(s) | 1063 |
| Psp124BI | GAGCTC | 1 cut(s) | 1009 |
| Psp1406I | AACGTT | 1 cut(s) | 760 |
| Psp5II | RGGWCCY | 1 cut(s) | 1343 |
| Psp6I | CCWGG | 2 cut(s) | 172, 179 |
| PspFI | CCCAGC | 1 cut(s) | 361 |
| PspGI | CCWGG | 2 cut(s) | 172, 179 |
| PspN4I | GGNNCC | 8 cut(s) | 79, 178, 185, 206, 1016, 1330, 1344, 1345 |
| PspPI | GGNCC | 5 cut(s) | 77, 316, 338, 1176, 1343 |
| PspPPI | RGGWCCY | 1 cut(s) | 1343 |
| PstI | CTGCAG | 1 cut(s) | 374 |
| PstNI | CAGNNNCTG | 1 cut(s) | 378 |
| PsuI | RGATCY | 2 cut(s) | 176, 1499 |
| RsaI | GTAC | 2 cut(s) | 452, 1406 |
| RsaNI | GTAC | 2 cut(s) | 451, 1405 |
| RseI | CAYNNNNRTG | 1 cut(s) | 679 |
| SacI | GAGCTC | 1 cut(s) | 1009 |
| SapI | GCTCTTC | 1 cut(s) | 856 |
| SaqAI | TTAA | 2 cut(s) | 559, 1553 |
| SatI | GCNGC | 3 cut(s) | 366, 421, 747 |
| Sau96I | GGNCC | 5 cut(s) | 77, 316, 338, 1176, 1343 |
| SchI | GAGTC | 5 cut(s) | 11, 269, 762, 911, 1107 |
| ScrFI | CCNGG | 2 cut(s) | 174, 181 |
| SduI | GDGCHC | 3 cut(s) | 610, 1009, 1226 |
| SfaNI | GCATC | 3 cut(s) | 126, 274, 406 |
| SfcI | CTRYAG | 1 cut(s) | 370 |
| SfoI | GGCGCC | 2 cut(s) | 1016, 1330 |
| Sfr274I | CTCGAG | 1 cut(s) | 504 |
| SinI | GGWCC | 2 cut(s) | 1176, 1343 |
| SlaI | CTCGAG | 1 cut(s) | 504 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 679 |
| SmlI | CTYRAG | 3 cut(s) | 504, 558, 741 |
| SmoI | CTYRAG | 3 cut(s) | 504, 558, 741 |
| Sse9I | AATT | 6 cut(s) | 658, 959, 1058, 1160, 1169, 1463 |
| SsiI | CCGC | 5 cut(s) | 94, 140, 809, 820, 1408 |
| SspDI | GGCGCC | 2 cut(s) | 1014, 1328 |
| SspMI | CTAG | 4 cut(s) | 595, 1069, 1497, 1540 |
| SstI | GAGCTC | 1 cut(s) | 1009 |
| StyD4I | CCNGG | 2 cut(s) | 172, 179 |
| StyI | CCWWGG | 1 cut(s) | 334 |
| TaaI | ACNGT | 1 cut(s) | 1233 |
| TaqI | TCGA | 5 cut(s) | 505, 539, 910, 1334, 1370 |
| TasI | AATT | 6 cut(s) | 658, 959, 1058, 1160, 1169, 1463 |
| TfiI | GAWTC | 2 cut(s) | 40, 90 |
| Tru1I | TTAA | 2 cut(s) | 559, 1553 |
| Tru9I | TTAA | 2 cut(s) | 559, 1553 |
| TscAI | CASTG | 1 cut(s) | 949 |
| TseFI | GTSAC | 2 cut(s) | 65, 765 |
| TseI | GCWGC | 3 cut(s) | 365, 420, 746 |
| Tsp45I | GTSAC | 2 cut(s) | 65, 765 |
| TspDTI | ATGAA | 5 cut(s) | 693, 712, 990, 1035, 1213 |
| TspRI | CASTG | 1 cut(s) | 949 |
| Vha464I | CTTAAG | 1 cut(s) | 558 |
| VneI | GTGCAC | 1 cut(s) | 1222 |
| VpaK11BI | GGWCC | 2 cut(s) | 1176, 1343 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 708 |
| XapI | RAATTY | 1 cut(s) | 1169 |
| XbaI | TCTAGA | 1 cut(s) | 1496 |
| XceI | RCATGY | 1 cut(s) | 1405 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 727 |
| XhoI | CTCGAG | 1 cut(s) | 504 |
| XmnI | GAANNNNTTC | 1 cut(s) | 850 |
| XspI | CTAG | 4 cut(s) | 595, 1069, 1497, 1540 |