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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 593 |
| AccII | CGCG | 1 cut(s) | 663 |
| AciI | CCGC | 3 cut(s) | 331, 661, 859 |
| AclWI | GGATC | 1 cut(s) | 87 |
| AcoI | YGGCCR | 5 cut(s) | 350, 370, 422, 611, 641 |
| AcsI | RAATTY | 3 cut(s) | 678, 712, 1208 |
| AfaI | GTAC | 1 cut(s) | 1028 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 348, 375, 650 |
| AgsI | TTSAA | 7 cut(s) | 59, 233, 251, 271, 446, 718, 1156 |
| AjiI | CACGTC | 2 cut(s) | 528, 553 |
| AjnI | CCWGG | 2 cut(s) | 776, 909 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 213, 245, 1068, 1100 |
| AleI | CACNNNNGTG | 1 cut(s) | 413 |
| AluBI | AGCT | 8 cut(s) | 67, 239, 382, 433, 735, 935, 941, 1289 |
| AluI | AGCT | 8 cut(s) | 67, 239, 382, 433, 735, 935, 941, 1289 |
| Alw26I | GTCTC | 2 cut(s) | 1072, 1276 |
| AlwI | GGATC | 1 cut(s) | 87 |
| Ama87I | CYCGRG | 1 cut(s) | 899 |
| AoxI | GGCC | 7 cut(s) | 332, 350, 370, 422, 611, 641, 873 |
| ApeKI | GCWGC | 4 cut(s) | 396, 433, 436, 959 |
| ApoI | RAATTY | 3 cut(s) | 678, 712, 1208 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1185 |
| AspS9I | GGNCC | 2 cut(s) | 333, 540 |
| AsuC2I | CCSGG | 1 cut(s) | 651 |
| AsuNHI | GCTAGC | 1 cut(s) | 67 |
| AvaI | CYCGRG | 1 cut(s) | 899 |
| AvaII | GGWCC | 1 cut(s) | 540 |
| BbsI | GAAGAC | 2 cut(s) | 1053, 1256 |
| BbvI | GCAGC | 4 cut(s) | 408, 420, 423, 971 |
| BccI | CCATC | 4 cut(s) | 872, 995, 1122, 1276 |
| BceAI | ACGGC | 1 cut(s) | 626 |
| BciT130I | CCWGG | 2 cut(s) | 778, 911 |
| BcnI | CCSGG | 1 cut(s) | 651 |
| BcoDI | GTCTC | 2 cut(s) | 1072, 1276 |
| BfaI | CTAG | 4 cut(s) | 68, 110, 906, 1118 |
| BfmI | CTRYAG | 1 cut(s) | 178 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 968 |
| BisI | GCNGC | 5 cut(s) | 332, 397, 434, 437, 960 |
| BlsI | GCNGC | 5 cut(s) | 333, 398, 435, 438, 961 |
| Bme1390I | CCNGG | 3 cut(s) | 651, 778, 911 |
| Bme18I | GGWCC | 1 cut(s) | 540 |
| BmeT110I | CYCGRG | 1 cut(s) | 899 |
| BmgBI | CACGTC | 2 cut(s) | 528, 553 |
| BmgT120I | GGNCC | 2 cut(s) | 333, 540 |
| BmiI | GGNNCC | 2 cut(s) | 541, 542 |
| BmrFI | CCNGG | 3 cut(s) | 651, 778, 911 |
| BmsI | GCATC | 3 cut(s) | 448, 874, 1222 |
| BmtI | GCTAGC | 1 cut(s) | 71 |
| BpiI | GAAGAC | 2 cut(s) | 1053, 1256 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 157, 189 |
| BpmI | CTGGAG | 1 cut(s) | 1007 |
| BpuEI | CTTGAG | 3 cut(s) | 449, 854, 921 |
| BpuMI | CCSGG | 1 cut(s) | 651 |
| BsaI | GGTCTC | 1 cut(s) | 1072 |
| BsaWI | WCCGGW | 1 cut(s) | 375 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 348, 375, 650 |
| Bse118I | RCCGGY | 6 cut(s) | 348, 368, 410, 420, 448, 613 |
| Bse1I | ACTGG | 2 cut(s) | 332, 1024 |
| BseBI | CCWGG | 2 cut(s) | 778, 911 |
| BseGI | GGATG | 3 cut(s) | 786, 990, 1018 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 348, 375, 650 |
| BseMII | CTCAG | 2 cut(s) | 327, 686 |
| BseNI | ACTGG | 2 cut(s) | 332, 1024 |
| BseX3I | CGGCCG | 2 cut(s) | 350, 611 |
| BseXI | GCAGC | 4 cut(s) | 408, 420, 423, 971 |
| BsgI | GTGCAG | 1 cut(s) | 1260 |
| Bsh1236I | CGCG | 1 cut(s) | 663 |
| Bsh1285I | CGRYCG | 2 cut(s) | 353, 614 |
| BshFI | GGCC | 7 cut(s) | 334, 352, 372, 424, 613, 643, 875 |
| BsiEI | CGRYCG | 2 cut(s) | 353, 614 |
| BsiHKCI | CYCGRG | 1 cut(s) | 899 |
| BslFI | GGGAC | 1 cut(s) | 553 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 348, 375, 650 |
| BsmAI | GTCTC | 2 cut(s) | 1072, 1276 |
| BsmBI | CGTCTC | 1 cut(s) | 1276 |
| BsmFI | GGGAC | 1 cut(s) | 553 |
| BsnI | GGCC | 7 cut(s) | 334, 352, 372, 424, 613, 643, 875 |
| Bso31I | GGTCTC | 1 cut(s) | 1072 |
| BsoBI | CYCGRG | 1 cut(s) | 899 |
| Bsp143I | GATC | 3 cut(s) | 79, 120, 1224 |
| BspACI | CCGC | 3 cut(s) | 331, 661, 859 |
| BspANI | GGCC | 7 cut(s) | 334, 352, 372, 424, 613, 643, 875 |
| BspCNI | CTCAG | 2 cut(s) | 326, 685 |
| BspFNI | CGCG | 1 cut(s) | 663 |
| BspLI | GGNNCC | 2 cut(s) | 541, 542 |
| BspOI | GCTAGC | 1 cut(s) | 71 |
| BspPI | GGATC | 1 cut(s) | 87 |
| BspTNI | GGTCTC | 1 cut(s) | 1072 |
| BsrFI | RCCGGY | 6 cut(s) | 348, 368, 410, 420, 448, 613 |
| BsrI | ACTGG | 2 cut(s) | 332, 1024 |
| BssAI | RCCGGY | 6 cut(s) | 348, 368, 410, 420, 448, 613 |
| BssMI | GATC | 3 cut(s) | 79, 120, 1224 |
| Bst2UI | CCWGG | 2 cut(s) | 778, 911 |
| Bst4CI | ACNGT | 7 cut(s) | 24, 570, 584, 591, 598, 605, 925 |
| Bst6I | CTCTTC | 4 cut(s) | 54, 111, 158, 778 |
| BstC8I | GCNNGC | 3 cut(s) | 69, 863, 933 |
| BstDEI | CTNAG | 5 cut(s) | 313, 672, 707, 964, 1290 |
| BstF5I | GGATG | 3 cut(s) | 786, 990, 1018 |
| BstFNI | CGCG | 1 cut(s) | 663 |
| BstKTI | GATC | 3 cut(s) | 82, 123, 1227 |
| BstMAI | GTCTC | 2 cut(s) | 1072, 1276 |
| BstMBI | GATC | 3 cut(s) | 79, 120, 1224 |
| BstMCI | CGRYCG | 2 cut(s) | 353, 614 |
| BstNI | CCWGG | 2 cut(s) | 778, 911 |
| BstSCI | CCNGG | 3 cut(s) | 649, 776, 909 |
| BstSFI | CTRYAG | 1 cut(s) | 178 |
| BstUI | CGCG | 1 cut(s) | 663 |
| BstV1I | GCAGC | 4 cut(s) | 408, 420, 423, 971 |
| BstV2I | GAAGAC | 2 cut(s) | 1053, 1256 |
| BstZI | CGGCCG | 2 cut(s) | 350, 611 |
| BsuRI | GGCC | 7 cut(s) | 334, 352, 372, 424, 613, 643, 875 |
| BtgZI | GCGATG | 1 cut(s) | 1250 |
| BtrI | CACGTC | 2 cut(s) | 528, 553 |
| BtsCI | GGATG | 3 cut(s) | 786, 990, 1018 |
| BtsI | GCAGTG | 2 cut(s) | 519, 544 |
| BtsIMutI | CAGTG | 3 cut(s) | 519, 544, 1277 |
| Cac8I | GCNNGC | 3 cut(s) | 69, 863, 933 |
| Cfr10I | RCCGGY | 6 cut(s) | 348, 368, 410, 420, 448, 613 |
| Cfr13I | GGNCC | 2 cut(s) | 333, 540 |
| Csp6I | GTAC | 1 cut(s) | 1027 |
| CviAII | CATG | 1 cut(s) | 916 |
| CviQI | GTAC | 1 cut(s) | 1027 |
| DdeI | CTNAG | 5 cut(s) | 313, 672, 707, 964, 1290 |
| DpnI | GATC | 3 cut(s) | 81, 122, 1226 |
| DpnII | GATC | 3 cut(s) | 79, 120, 1224 |
| EaeI | YGGCCR | 5 cut(s) | 350, 370, 422, 611, 641 |
| EagI | CGGCCG | 2 cut(s) | 350, 611 |
| Eam1104I | CTCTTC | 4 cut(s) | 54, 111, 158, 778 |
| EarI | CTCTTC | 4 cut(s) | 54, 111, 158, 778 |
| EciI | GGCGGA | 1 cut(s) | 848 |
| EclXI | CGGCCG | 2 cut(s) | 350, 611 |
| Eco31I | GGTCTC | 1 cut(s) | 1072 |
| Eco32I | GATATC | 2 cut(s) | 836, 856 |
| Eco47I | GGWCC | 1 cut(s) | 540 |
| Eco52I | CGGCCG | 2 cut(s) | 350, 611 |
| Eco88I | CYCGRG | 1 cut(s) | 899 |
| EcoO109I | RGGNCCY | 1 cut(s) | 540 |
| EcoRI | GAATTC | 1 cut(s) | 1208 |
| EcoRII | CCWGG | 2 cut(s) | 776, 909 |
| EcoRV | GATATC | 2 cut(s) | 836, 856 |
| Esp3I | CGTCTC | 1 cut(s) | 1276 |
| FaeI | CATG | 1 cut(s) | 919 |
| FaqI | GGGAC | 1 cut(s) | 553 |
| FatI | CATG | 1 cut(s) | 915 |
| FauNDI | CATATG | 1 cut(s) | 1008 |
| FblI | GTMKAC | 1 cut(s) | 593 |
| Fnu4HI | GCNGC | 5 cut(s) | 332, 397, 434, 437, 960 |
| FokI | GGATG | 3 cut(s) | 793, 977, 1025 |
| Fsp4HI | GCNGC | 5 cut(s) | 332, 397, 434, 437, 960 |
| FspBI | CTAG | 4 cut(s) | 68, 110, 906, 1118 |
| GluI | GCNGC | 5 cut(s) | 332, 397, 434, 437, 960 |
| GsuI | CTGGAG | 1 cut(s) | 1007 |
| HaeIII | GGCC | 7 cut(s) | 334, 352, 372, 424, 613, 643, 875 |
| Hin1II | CATG | 1 cut(s) | 919 |
| HincII | GTYRAC | 7 cut(s) | 566, 573, 587, 594, 601, 608, 619 |
| HindII | GTYRAC | 7 cut(s) | 566, 573, 587, 594, 601, 608, 619 |
| HindIII | AAGCTT | 1 cut(s) | 939 |
| HinfI | GANTC | 9 cut(s) | 229, 305, 318, 882, 895, 1000, 1016, 1100, 1252 |
| Hpy166II | GTNNAC | 8 cut(s) | 418, 566, 573, 587, 594, 601, 608, 619 |
| Hpy188I | TCNGA | 5 cut(s) | 125, 629, 675, 748, 1180 |
| Hpy8I | GTNNAC | 8 cut(s) | 418, 566, 573, 587, 594, 601, 608, 619 |
| Hpy99I | CGWCG | 2 cut(s) | 598, 633 |
| HpyAV | CCTTC | 2 cut(s) | 1050, 1273 |
| HpyCH4III | ACNGT | 7 cut(s) | 24, 570, 584, 591, 598, 605, 925 |
| HpyCH4IV | ACGT | 3 cut(s) | 527, 552, 1092 |
| HpyCH4V | TGCA | 2 cut(s) | 439, 1277 |
| HpyF3I | CTNAG | 5 cut(s) | 313, 672, 707, 964, 1290 |
| HpySE526I | ACGT | 3 cut(s) | 527, 552, 1092 |
| Hsp92II | CATG | 1 cut(s) | 919 |
| KflI | GGGWCCC | 1 cut(s) | 540 |
| Kzo9I | GATC | 3 cut(s) | 79, 120, 1224 |
| LmnI | GCTCC | 4 cut(s) | 387, 749, 814, 1026 |
| Lsp1109I | GCAGC | 4 cut(s) | 408, 420, 423, 971 |
| LweI | GCATC | 3 cut(s) | 448, 874, 1222 |
| MaeI | CTAG | 4 cut(s) | 68, 110, 906, 1118 |
| MaeII | ACGT | 3 cut(s) | 527, 552, 1092 |
| MaeIII | GTNAC | 2 cut(s) | 785, 1097 |
| MalI | GATC | 3 cut(s) | 81, 122, 1226 |
| MboI | GATC | 3 cut(s) | 79, 120, 1224 |
| MboII | GAAGA | 9 cut(s) | 71, 128, 172, 175, 765, 1055, 1058, 1088, 1261 |
| MfeI | CAATTG | 1 cut(s) | 822 |
| MluCI | AATT | 8 cut(s) | 655, 678, 685, 712, 760, 797, 822, 1208 |
| MlyI | GAGTC | 4 cut(s) | 327, 994, 1094, 1246 |
| MmeI | TCCRAC | 2 cut(s) | 57, 652 |
| MnlI | CCTC | 7 cut(s) | 106, 130, 183, 294, 300, 961, 1148 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1185 |
| MseI | TTAA | 4 cut(s) | 299, 759, 1194, 1202 |
| MslI | CAYNNNNRTG | 3 cut(s) | 413, 995, 1011 |
| MspR9I | CCNGG | 3 cut(s) | 651, 778, 911 |
| MunI | CAATTG | 1 cut(s) | 822 |
| MvaI | CCWGG | 2 cut(s) | 778, 911 |
| MvnI | CGCG | 1 cut(s) | 663 |
| NciI | CCSGG | 1 cut(s) | 651 |
| NdeI | CATATG | 1 cut(s) | 1008 |
| NdeII | GATC | 3 cut(s) | 79, 120, 1224 |
| NheI | GCTAGC | 1 cut(s) | 67 |
| NlaIII | CATG | 1 cut(s) | 919 |
| NlaIV | GGNNCC | 2 cut(s) | 541, 542 |
| NmuCI | GTSAC | 1 cut(s) | 1097 |
| OliI | CACNNNNGTG | 1 cut(s) | 413 |
| PaeR7I | CTCGAG | 1 cut(s) | 899 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1185 |
| PfeI | GAWTC | 5 cut(s) | 229, 305, 882, 895, 1016 |
| PfoI | TCCNGGA | 1 cut(s) | 776 |
| PkrI | GCNGC | 5 cut(s) | 333, 398, 435, 438, 961 |
| PleI | GAGTC | 4 cut(s) | 326, 994, 1094, 1246 |
| PpsI | GAGTC | 4 cut(s) | 326, 994, 1094, 1246 |
| PpuMI | RGGWCCY | 1 cut(s) | 540 |
| Psp5II | RGGWCCY | 1 cut(s) | 540 |
| Psp6I | CCWGG | 2 cut(s) | 776, 909 |
| PspGI | CCWGG | 2 cut(s) | 776, 909 |
| PspN4I | GGNNCC | 2 cut(s) | 541, 542 |
| PspPI | GGNCC | 2 cut(s) | 333, 540 |
| PspPPI | RGGWCCY | 1 cut(s) | 540 |
| RsaI | GTAC | 1 cut(s) | 1028 |
| RsaNI | GTAC | 1 cut(s) | 1027 |
| RseI | CAYNNNNRTG | 3 cut(s) | 413, 995, 1011 |
| SalI | GTCGAC | 1 cut(s) | 592 |
| SaqAI | TTAA | 4 cut(s) | 299, 759, 1194, 1202 |
| SatI | GCNGC | 5 cut(s) | 332, 397, 434, 437, 960 |
| Sau3AI | GATC | 3 cut(s) | 79, 120, 1224 |
| Sau96I | GGNCC | 2 cut(s) | 333, 540 |
| SchI | GAGTC | 4 cut(s) | 327, 994, 1094, 1246 |
| ScrFI | CCNGG | 3 cut(s) | 651, 778, 911 |
| SfaNI | GCATC | 3 cut(s) | 448, 874, 1222 |
| SfcI | CTRYAG | 1 cut(s) | 178 |
| Sfr274I | CTCGAG | 1 cut(s) | 899 |
| SgrAI | CRCCGGYG | 1 cut(s) | 410 |
| SinI | GGWCC | 1 cut(s) | 540 |
| SlaI | CTCGAG | 1 cut(s) | 899 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 413, 995, 1011 |
| SmlI | CTYRAG | 4 cut(s) | 428, 869, 899, 936 |
| SmoI | CTYRAG | 4 cut(s) | 428, 869, 899, 936 |
| Sse9I | AATT | 8 cut(s) | 655, 678, 685, 712, 760, 797, 822, 1208 |
| SsiI | CCGC | 3 cut(s) | 331, 661, 859 |
| SspMI | CTAG | 4 cut(s) | 68, 110, 906, 1118 |
| StyD4I | CCNGG | 3 cut(s) | 649, 776, 909 |
| TaaI | ACNGT | 7 cut(s) | 24, 570, 584, 591, 598, 605, 925 |
| TaiI | ACGT | 3 cut(s) | 530, 555, 1095 |
| TaqI | TCGA | 3 cut(s) | 593, 900, 1074 |
| TasI | AATT | 8 cut(s) | 655, 678, 685, 712, 760, 797, 822, 1208 |
| TauI | GCSGC | 1 cut(s) | 334 |
| TfiI | GAWTC | 5 cut(s) | 229, 305, 882, 895, 1016 |
| Tru1I | TTAA | 4 cut(s) | 299, 759, 1194, 1202 |
| Tru9I | TTAA | 4 cut(s) | 299, 759, 1194, 1202 |
| TscAI | CASTG | 3 cut(s) | 526, 551, 1284 |
| TseFI | GTSAC | 1 cut(s) | 1097 |
| TseI | GCWGC | 4 cut(s) | 396, 433, 436, 959 |
| Tsp45I | GTSAC | 1 cut(s) | 1097 |
| TspDTI | ATGAA | 5 cut(s) | 17, 270, 593, 1052, 1056 |
| TspGWI | ACGGA | 2 cut(s) | 170, 1085 |
| TspRI | CASTG | 3 cut(s) | 526, 551, 1284 |
| VpaK11BI | GGWCC | 1 cut(s) | 540 |
| XapI | RAATTY | 3 cut(s) | 678, 712, 1208 |
| XbaI | TCTAGA | 1 cut(s) | 109 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 557 |
| XhoI | CTCGAG | 1 cut(s) | 899 |
| XmiI | GTMKAC | 1 cut(s) | 593 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1185 |
| XspI | CTAG | 4 cut(s) | 68, 110, 906, 1118 |