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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 78 |
| AccB1I | GGYRCC | 2 cut(s) | 51, 640 |
| AccI | GTMKAC | 1 cut(s) | 197 |
| AccII | CGCG | 1 cut(s) | 740 |
| AciI | CCGC | 4 cut(s) | 8, 11, 55, 432 |
| AcoI | YGGCCR | 1 cut(s) | 91 |
| AcvI | CACGTG | 1 cut(s) | 257 |
| AcyI | GRCGYC | 3 cut(s) | 52, 194, 641 |
| AfaI | GTAC | 1 cut(s) | 455 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 48, 96, 751 |
| AgeI | ACCGGT | 2 cut(s) | 111, 211 |
| AgsI | TTSAA | 5 cut(s) | 22, 108, 447, 534, 581 |
| AjnI | CCWGG | 1 cut(s) | 34 |
| AluBI | AGCT | 7 cut(s) | 25, 252, 304, 324, 351, 633, 655 |
| AluI | AGCT | 7 cut(s) | 25, 252, 304, 324, 351, 633, 655 |
| Alw21I | GWGCWC | 1 cut(s) | 306 |
| Alw26I | GTCTC | 1 cut(s) | 120 |
| AoxI | GGCC | 1 cut(s) | 91 |
| ApeKI | GCWGC | 8 cut(s) | 243, 260, 263, 286, 289, 316, 324, 369 |
| AsiGI | ACCGGT | 2 cut(s) | 111, 211 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 476 |
| AspLEI | GCGC | 3 cut(s) | 54, 643, 742 |
| BanI | GGYRCC | 2 cut(s) | 51, 640 |
| BanII | GRGCYC | 2 cut(s) | 280, 306 |
| BbrPI | CACGTG | 1 cut(s) | 257 |
| BbsI | GAAGAC | 2 cut(s) | 344, 547 |
| Bbv12I | GWGCWC | 1 cut(s) | 306 |
| BbvI | GCAGC | 8 cut(s) | 255, 272, 275, 298, 301, 311, 328, 381 |
| BccI | CCATC | 3 cut(s) | 162, 413, 489 |
| BciT130I | CCWGG | 1 cut(s) | 36 |
| BcoDI | GTCTC | 1 cut(s) | 120 |
| BfaI | CTAG | 1 cut(s) | 695 |
| BfoI | RGCGCY | 2 cut(s) | 55, 644 |
| BfuAI | ACCTGC | 1 cut(s) | 78 |
| BglII | AGATCT | 1 cut(s) | 135 |
| Bme1390I | CCNGG | 1 cut(s) | 36 |
| BmiI | GGNNCC | 5 cut(s) | 40, 53, 236, 642, 708 |
| BmrFI | CCNGG | 1 cut(s) | 36 |
| BmsI | GCATC | 1 cut(s) | 437 |
| BpiI | GAAGAC | 2 cut(s) | 344, 547 |
| BpuEI | CTTGAG | 1 cut(s) | 385 |
| BsaAI | YACGTR | 1 cut(s) | 257 |
| BsaHI | GRCGYC | 3 cut(s) | 52, 194, 641 |
| BsaI | GGTCTC | 1 cut(s) | 120 |
| BsaJI | CCNNGG | 4 cut(s) | 34, 238, 701, 746 |
| BsaWI | WCCGGW | 3 cut(s) | 96, 111, 211 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 48, 96, 751 |
| Bse118I | RCCGGY | 5 cut(s) | 48, 89, 111, 190, 211 |
| BseBI | CCWGG | 1 cut(s) | 36 |
| BseDI | CCNNGG | 4 cut(s) | 34, 238, 701, 746 |
| BseGI | GGATG | 1 cut(s) | 428 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 48, 96, 751 |
| BseRI | GAGGAG | 1 cut(s) | 314 |
| BseXI | GCAGC | 8 cut(s) | 255, 272, 275, 298, 301, 311, 328, 381 |
| BsgI | GTGCAG | 2 cut(s) | 279, 305 |
| Bsh1236I | CGCG | 1 cut(s) | 740 |
| BshFI | GGCC | 1 cut(s) | 93 |
| BshNI | GGYRCC | 2 cut(s) | 51, 640 |
| BshTI | ACCGGT | 2 cut(s) | 111, 211 |
| BsiHKAI | GWGCWC | 1 cut(s) | 306 |
| BsiSI | CCGG | 7 cut(s) | 49, 74, 90, 97, 112, 191, 212 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 48, 96, 751 |
| BsmAI | GTCTC | 1 cut(s) | 120 |
| BsnI | GGCC | 1 cut(s) | 93 |
| Bso31I | GGTCTC | 1 cut(s) | 120 |
| Bsp1286I | GDGCHC | 2 cut(s) | 280, 306 |
| Bsp143I | GATC | 1 cut(s) | 135 |
| BspACI | CCGC | 4 cut(s) | 8, 11, 55, 432 |
| BspANI | GGCC | 1 cut(s) | 93 |
| BspFNI | CGCG | 1 cut(s) | 740 |
| BspHI | TCATGA | 1 cut(s) | 627 |
| BspLI | GGNNCC | 5 cut(s) | 40, 53, 236, 642, 708 |
| BspMI | ACCTGC | 1 cut(s) | 78 |
| BspT107I | GGYRCC | 2 cut(s) | 51, 640 |
| BspTNI | GGTCTC | 1 cut(s) | 120 |
| BsrFI | RCCGGY | 5 cut(s) | 48, 89, 111, 190, 211 |
| BssAI | RCCGGY | 5 cut(s) | 48, 89, 111, 190, 211 |
| BssECI | CCNNGG | 4 cut(s) | 34, 238, 701, 746 |
| BssMI | GATC | 1 cut(s) | 135 |
| BssNI | GRCGYC | 3 cut(s) | 52, 194, 641 |
| BssT1I | CCWWGG | 3 cut(s) | 238, 701, 746 |
| Bst2UI | CCWGG | 1 cut(s) | 36 |
| Bst4CI | ACNGT | 1 cut(s) | 272 |
| BstACI | GRCGYC | 3 cut(s) | 52, 194, 641 |
| BstBAI | YACGTR | 1 cut(s) | 257 |
| BstC8I | GCNNGC | 1 cut(s) | 329 |
| BstF5I | GGATG | 1 cut(s) | 428 |
| BstFNI | CGCG | 1 cut(s) | 740 |
| BstH2I | RGCGCY | 2 cut(s) | 55, 644 |
| BstHHI | GCGC | 3 cut(s) | 54, 643, 742 |
| BstKTI | GATC | 1 cut(s) | 138 |
| BstMAI | GTCTC | 1 cut(s) | 120 |
| BstMBI | GATC | 1 cut(s) | 135 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 249 |
| BstNI | CCWGG | 1 cut(s) | 36 |
| BstSCI | CCNGG | 1 cut(s) | 34 |
| BstUI | CGCG | 1 cut(s) | 740 |
| BstV1I | GCAGC | 8 cut(s) | 255, 272, 275, 298, 301, 311, 328, 381 |
| BstV2I | GAAGAC | 2 cut(s) | 344, 547 |
| BstX2I | RGATCY | 1 cut(s) | 135 |
| BstYI | RGATCY | 1 cut(s) | 135 |
| BsuRI | GGCC | 1 cut(s) | 93 |
| BtsCI | GGATG | 1 cut(s) | 428 |
| BtsI | GCAGTG | 1 cut(s) | 173 |
| BtsIMutI | CAGTG | 1 cut(s) | 173 |
| BveI | ACCTGC | 1 cut(s) | 78 |
| Cac8I | GCNNGC | 1 cut(s) | 329 |
| CciI | TCATGA | 1 cut(s) | 627 |
| CfoI | GCGC | 3 cut(s) | 54, 643, 742 |
| Cfr10I | RCCGGY | 5 cut(s) | 48, 89, 111, 190, 211 |
| CseI | GACGC | 1 cut(s) | 183 |
| Csp6I | GTAC | 1 cut(s) | 454 |
| CspAI | ACCGGT | 2 cut(s) | 111, 211 |
| CviAII | CATG | 4 cut(s) | 281, 628, 645, 664 |
| CviQI | GTAC | 1 cut(s) | 454 |
| DinI | GGCGCC | 2 cut(s) | 53, 642 |
| DpnI | GATC | 1 cut(s) | 137 |
| DpnII | GATC | 1 cut(s) | 135 |
| EaeI | YGGCCR | 1 cut(s) | 91 |
| Ecl136II | GAGCTC | 1 cut(s) | 304 |
| Eco130I | CCWWGG | 3 cut(s) | 238, 701, 746 |
| Eco24I | GRGCYC | 2 cut(s) | 280, 306 |
| Eco31I | GGTCTC | 1 cut(s) | 120 |
| Eco53kI | GAGCTC | 1 cut(s) | 304 |
| Eco72I | CACGTG | 1 cut(s) | 257 |
| EcoICRI | GAGCTC | 1 cut(s) | 304 |
| EcoRII | CCWGG | 1 cut(s) | 34 |
| EcoT14I | CCWWGG | 3 cut(s) | 238, 701, 746 |
| EcoT38I | GRGCYC | 2 cut(s) | 280, 306 |
| EgeI | GGCGCC | 2 cut(s) | 53, 642 |
| EheI | GGCGCC | 2 cut(s) | 53, 642 |
| ErhI | CCWWGG | 3 cut(s) | 238, 701, 746 |
| FaeI | CATG | 4 cut(s) | 284, 631, 648, 667 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 532, 564 |
| FatI | CATG | 4 cut(s) | 280, 627, 644, 663 |
| FblI | GTMKAC | 1 cut(s) | 197 |
| FokI | GGATG | 1 cut(s) | 415 |
| FriOI | GRGCYC | 2 cut(s) | 280, 306 |
| FspBI | CTAG | 1 cut(s) | 695 |
| GlaI | GCGC | 3 cut(s) | 53, 642, 741 |
| HaeII | RGCGCY | 2 cut(s) | 55, 644 |
| HaeIII | GGCC | 1 cut(s) | 93 |
| HapII | CCGG | 7 cut(s) | 49, 74, 90, 97, 112, 191, 212 |
| HgaI | GACGC | 1 cut(s) | 183 |
| HhaI | GCGC | 3 cut(s) | 54, 643, 742 |
| Hin1I | GRCGYC | 3 cut(s) | 52, 194, 641 |
| Hin1II | CATG | 4 cut(s) | 284, 631, 648, 667 |
| Hin6I | GCGC | 3 cut(s) | 52, 641, 740 |
| HinP1I | GCGC | 3 cut(s) | 52, 641, 740 |
| HinfI | GANTC | 5 cut(s) | 77, 127, 391, 543, 724 |
| HpaII | CCGG | 7 cut(s) | 49, 74, 90, 97, 112, 191, 212 |
| Hpy166II | GTNNAC | 2 cut(s) | 166, 198 |
| Hpy188I | TCNGA | 3 cut(s) | 132, 471, 593 |
| Hpy188III | TCNNGA | 4 cut(s) | 388, 403, 628, 721 |
| Hpy8I | GTNNAC | 2 cut(s) | 166, 198 |
| HpyAV | CCTTC | 3 cut(s) | 180, 487, 564 |
| HpyCH4III | ACNGT | 1 cut(s) | 272 |
| HpyCH4IV | ACGT | 3 cut(s) | 256, 612, 650 |
| HpyCH4V | TGCA | 2 cut(s) | 260, 286 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 249 |
| HpySE526I | ACGT | 3 cut(s) | 256, 612, 650 |
| Hsp92I | GRCGYC | 3 cut(s) | 52, 194, 641 |
| Hsp92II | CATG | 4 cut(s) | 284, 631, 648, 667 |
| HspAI | GCGC | 3 cut(s) | 52, 641, 740 |
| KasI | GGCGCC | 2 cut(s) | 51, 640 |
| Kzo9I | GATC | 1 cut(s) | 135 |
| LmnI | GCTCC | 1 cut(s) | 301 |
| Lsp1109I | GCAGC | 8 cut(s) | 255, 272, 275, 298, 301, 311, 328, 381 |
| LweI | GCATC | 1 cut(s) | 437 |
| MaeI | CTAG | 1 cut(s) | 695 |
| MaeII | ACGT | 3 cut(s) | 256, 612, 650 |
| MaeIII | GTNAC | 1 cut(s) | 388 |
| MalI | GATC | 1 cut(s) | 137 |
| MboI | GATC | 1 cut(s) | 135 |
| MboII | GAAGA | 6 cut(s) | 136, 145, 149, 349, 552, 693 |
| MflI | RGATCY | 1 cut(s) | 135 |
| MhlI | GDGCHC | 2 cut(s) | 280, 306 |
| MluCI | AATT | 1 cut(s) | 585 |
| Mly113I | GGCGCC | 2 cut(s) | 52, 641 |
| MlyI | GAGTC | 3 cut(s) | 385, 537, 733 |
| MnlI | CCTC | 2 cut(s) | 292, 745 |
| MroXI | GAANNNNTTC | 1 cut(s) | 476 |
| MslI | CAYNNNNRTG | 1 cut(s) | 676 |
| MspI | CCGG | 7 cut(s) | 49, 74, 90, 97, 112, 191, 212 |
| MspR9I | CCNGG | 1 cut(s) | 36 |
| MvaI | CCWGG | 1 cut(s) | 36 |
| MvnI | CGCG | 1 cut(s) | 740 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 249 |
| NarI | GGCGCC | 2 cut(s) | 52, 641 |
| NdeII | GATC | 1 cut(s) | 135 |
| NlaIII | CATG | 4 cut(s) | 284, 631, 648, 667 |
| NlaIV | GGNNCC | 5 cut(s) | 40, 53, 236, 642, 708 |
| NmuCI | GTSAC | 1 cut(s) | 388 |
| PagI | TCATGA | 1 cut(s) | 627 |
| PdmI | GAANNNNTTC | 1 cut(s) | 476 |
| PfeI | GAWTC | 2 cut(s) | 77, 127 |
| PinAI | ACCGGT | 2 cut(s) | 111, 211 |
| PleI | GAGTC | 3 cut(s) | 385, 537, 732 |
| PluTI | GGCGCC | 2 cut(s) | 55, 644 |
| PmaCI | CACGTG | 1 cut(s) | 257 |
| PmlI | CACGTG | 1 cut(s) | 257 |
| PpsI | GAGTC | 3 cut(s) | 385, 537, 732 |
| Ppu21I | YACGTR | 1 cut(s) | 257 |
| Psp124BI | GAGCTC | 1 cut(s) | 306 |
| Psp6I | CCWGG | 1 cut(s) | 34 |
| PspCI | CACGTG | 1 cut(s) | 257 |
| PspGI | CCWGG | 1 cut(s) | 34 |
| PspN4I | GGNNCC | 5 cut(s) | 40, 53, 236, 642, 708 |
| PsuI | RGATCY | 1 cut(s) | 135 |
| RsaI | GTAC | 1 cut(s) | 455 |
| RsaNI | GTAC | 1 cut(s) | 454 |
| RseI | CAYNNNNRTG | 1 cut(s) | 676 |
| SacI | GAGCTC | 1 cut(s) | 306 |
| Sau3AI | GATC | 1 cut(s) | 135 |
| SchI | GAGTC | 3 cut(s) | 385, 537, 733 |
| ScrFI | CCNGG | 1 cut(s) | 36 |
| SduI | GDGCHC | 2 cut(s) | 280, 306 |
| SfaNI | GCATC | 1 cut(s) | 437 |
| SfoI | GGCGCC | 2 cut(s) | 53, 642 |
| SgrAI | CRCCGGYG | 1 cut(s) | 190 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 676 |
| SmlI | CTYRAG | 1 cut(s) | 364 |
| SmoI | CTYRAG | 1 cut(s) | 364 |
| Sse9I | AATT | 1 cut(s) | 585 |
| SsiI | CCGC | 4 cut(s) | 8, 11, 55, 432 |
| SspDI | GGCGCC | 2 cut(s) | 51, 640 |
| SspMI | CTAG | 1 cut(s) | 695 |
| SstI | GAGCTC | 1 cut(s) | 306 |
| StyD4I | CCNGG | 1 cut(s) | 34 |
| StyI | CCWWGG | 3 cut(s) | 238, 701, 746 |
| TaaI | ACNGT | 1 cut(s) | 272 |
| TaiI | ACGT | 3 cut(s) | 259, 615, 653 |
| TaqI | TCGA | 1 cut(s) | 274 |
| TasI | AATT | 1 cut(s) | 585 |
| TauI | GCSGC | 2 cut(s) | 13, 57 |
| TfiI | GAWTC | 2 cut(s) | 77, 127 |
| TscAI | CASTG | 1 cut(s) | 180 |
| TseFI | GTSAC | 1 cut(s) | 388 |
| TseI | GCWGC | 8 cut(s) | 243, 260, 263, 286, 289, 316, 324, 369 |
| Tsp45I | GTSAC | 1 cut(s) | 388 |
| TspDTI | ATGAA | 2 cut(s) | 616, 661 |
| TspGWI | ACGGA | 1 cut(s) | 441 |
| TspRI | CASTG | 1 cut(s) | 180 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 350 |
| XmiI | GTMKAC | 1 cut(s) | 197 |
| XmnI | GAANNNNTTC | 1 cut(s) | 476 |
| XspI | CTAG | 1 cut(s) | 695 |