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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 2 cut(s) | 645, 825 |
| AccB1I | GGYRCC | 3 cut(s) | 600, 780, 938 |
| AciI | CCGC | 1 cut(s) | 145 |
| AclWI | GGATC | 1 cut(s) | 537 |
| AcsI | RAATTY | 2 cut(s) | 212, 344 |
| AcyI | GRCGYC | 3 cut(s) | 601, 781, 939 |
| AfaI | GTAC | 1 cut(s) | 32 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 596, 776, 935 |
| AgsI | TTSAA | 3 cut(s) | 80, 160, 976 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 72, 104 |
| AluBI | AGCT | 2 cut(s) | 478, 488 |
| AluI | AGCT | 2 cut(s) | 478, 488 |
| Alw21I | GWGCWC | 1 cut(s) | 480 |
| Alw26I | GTCTC | 4 cut(s) | 76, 280, 412, 448 |
| AlwI | GGATC | 1 cut(s) | 537 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 278 |
| AoxI | GGCC | 1 cut(s) | 925 |
| ApoI | RAATTY | 2 cut(s) | 212, 344 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 189 |
| AspLEI | GCGC | 4 cut(s) | 603, 783, 941, 982 |
| AspS9I | GGNCC | 3 cut(s) | 647, 827, 926 |
| AvaII | GGWCC | 2 cut(s) | 647, 827 |
| BaeGI | GKGCMC | 2 cut(s) | 589, 769 |
| BanI | GGYRCC | 3 cut(s) | 600, 780, 938 |
| BanII | GRGCYC | 1 cut(s) | 480 |
| BbsI | GAAGAC | 3 cut(s) | 57, 260, 392 |
| Bbv12I | GWGCWC | 1 cut(s) | 480 |
| BccI | CCATC | 4 cut(s) | 126, 280, 412, 966 |
| BclI | TGATCA | 1 cut(s) | 1036 |
| BcoDI | GTCTC | 4 cut(s) | 76, 280, 412, 448 |
| BfaI | CTAG | 1 cut(s) | 122 |
| BfoI | RGCGCY | 4 cut(s) | 604, 784, 942, 983 |
| Bme18I | GGWCC | 2 cut(s) | 647, 827 |
| BmgT120I | GGNCC | 3 cut(s) | 647, 827, 926 |
| BmiI | GGNNCC | 5 cut(s) | 602, 701, 782, 881, 940 |
| BmrI | ACTGGG | 2 cut(s) | 266, 398 |
| BmsI | GCATC | 1 cut(s) | 958 |
| BmuI | ACTGGG | 2 cut(s) | 266, 398 |
| BpiI | GAAGAC | 3 cut(s) | 57, 260, 392 |
| BpmI | CTGGAG | 1 cut(s) | 11 |
| BsaHI | GRCGYC | 3 cut(s) | 601, 781, 939 |
| BsaI | GGTCTC | 1 cut(s) | 76 |
| BsaJI | CCNNGG | 1 cut(s) | 546 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 596, 776, 935 |
| Bse1I | ACTGG | 3 cut(s) | 28, 272, 404 |
| BseDI | CCNNGG | 1 cut(s) | 546 |
| BseGI | GGATG | 3 cut(s) | 22, 69, 516 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 596, 776, 935 |
| BseNI | ACTGG | 3 cut(s) | 28, 272, 404 |
| BseSI | GKGCMC | 2 cut(s) | 589, 769 |
| BsgI | GTGCAG | 1 cut(s) | 303 |
| BshFI | GGCC | 1 cut(s) | 927 |
| BshNI | GGYRCC | 3 cut(s) | 600, 780, 938 |
| BsiHKAI | GWGCWC | 1 cut(s) | 480 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 596, 776, 935 |
| BsmAI | GTCTC | 4 cut(s) | 76, 280, 412, 448 |
| BsmBI | CGTCTC | 1 cut(s) | 448 |
| BsnI | GGCC | 1 cut(s) | 927 |
| Bso31I | GGTCTC | 1 cut(s) | 76 |
| Bsp1286I | GDGCHC | 3 cut(s) | 480, 589, 769 |
| Bsp143I | GATC | 4 cut(s) | 228, 360, 542, 1036 |
| BspACI | CCGC | 1 cut(s) | 145 |
| BspANI | GGCC | 1 cut(s) | 927 |
| BspHI | TCATGA | 1 cut(s) | 472 |
| BspLI | GGNNCC | 5 cut(s) | 602, 701, 782, 881, 940 |
| BspPI | GGATC | 1 cut(s) | 537 |
| BspT107I | GGYRCC | 3 cut(s) | 600, 780, 938 |
| BspTNI | GGTCTC | 1 cut(s) | 76 |
| BsrI | ACTGG | 3 cut(s) | 28, 272, 404 |
| BssECI | CCNNGG | 1 cut(s) | 546 |
| BssMI | GATC | 4 cut(s) | 228, 360, 542, 1036 |
| BssNI | GRCGYC | 3 cut(s) | 601, 781, 939 |
| Bst4CI | ACNGT | 1 cut(s) | 451 |
| Bst6I | CTCTTC | 3 cut(s) | 415, 700, 880 |
| BstACI | GRCGYC | 3 cut(s) | 601, 781, 939 |
| BstDEI | CTNAG | 5 cut(s) | 294, 426, 623, 803, 951 |
| BstDSI | CCRYGG | 1 cut(s) | 546 |
| BstF5I | GGATG | 3 cut(s) | 22, 69, 516 |
| BstH2I | RGCGCY | 4 cut(s) | 604, 784, 942, 983 |
| BstHHI | GCGC | 4 cut(s) | 603, 783, 941, 982 |
| BstKTI | GATC | 4 cut(s) | 231, 363, 545, 1039 |
| BstMAI | GTCTC | 4 cut(s) | 76, 280, 412, 448 |
| BstMBI | GATC | 4 cut(s) | 228, 360, 542, 1036 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 607, 787, 977 |
| BstSLI | GKGCMC | 2 cut(s) | 589, 769 |
| BstV2I | GAAGAC | 3 cut(s) | 57, 260, 392 |
| BstX2I | RGATCY | 1 cut(s) | 542 |
| BstYI | RGATCY | 1 cut(s) | 542 |
| BsuRI | GGCC | 1 cut(s) | 927 |
| BtgI | CCRYGG | 1 cut(s) | 546 |
| BtgZI | GCGATG | 2 cut(s) | 254, 386 |
| BtsCI | GGATG | 3 cut(s) | 22, 69, 516 |
| CaiI | CAGNNNCTG | 1 cut(s) | 278 |
| CciI | TCATGA | 1 cut(s) | 472 |
| CfoI | GCGC | 4 cut(s) | 603, 783, 941, 982 |
| Cfr13I | GGNCC | 3 cut(s) | 647, 827, 926 |
| Csp6I | GTAC | 1 cut(s) | 31 |
| CviAII | CATG | 2 cut(s) | 473, 509 |
| CviJI | RGCY | 7 cut(s) | 5, 141, 478, 488, 920, 927, 957 |
| CviKI_1 | RGCY | 7 cut(s) | 5, 141, 478, 488, 920, 927, 957 |
| CviQI | GTAC | 1 cut(s) | 31 |
| DdeI | CTNAG | 5 cut(s) | 294, 426, 623, 803, 951 |
| DinI | GGCGCC | 3 cut(s) | 602, 782, 940 |
| DpnI | GATC | 4 cut(s) | 230, 362, 544, 1038 |
| DpnII | GATC | 4 cut(s) | 228, 360, 542, 1036 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 645, 825 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 645, 825 |
| Eam1104I | CTCTTC | 3 cut(s) | 415, 700, 880 |
| EarI | CTCTTC | 3 cut(s) | 415, 700, 880 |
| Ecl136II | GAGCTC | 1 cut(s) | 478 |
| Eco24I | GRGCYC | 1 cut(s) | 480 |
| Eco31I | GGTCTC | 1 cut(s) | 76 |
| Eco47I | GGWCC | 2 cut(s) | 647, 827 |
| Eco53kI | GAGCTC | 1 cut(s) | 478 |
| EcoICRI | GAGCTC | 1 cut(s) | 478 |
| EcoRI | GAATTC | 2 cut(s) | 212, 344 |
| EcoT38I | GRGCYC | 1 cut(s) | 480 |
| EgeI | GGCGCC | 3 cut(s) | 602, 782, 940 |
| EheI | GGCGCC | 3 cut(s) | 602, 782, 940 |
| Esp3I | CGTCTC | 1 cut(s) | 448 |
| FaeI | CATG | 2 cut(s) | 476, 512 |
| FatI | CATG | 2 cut(s) | 472, 508 |
| FauNDI | CATATG | 1 cut(s) | 12 |
| FbaI | TGATCA | 1 cut(s) | 1036 |
| FokI | GGATG | 3 cut(s) | 29, 76, 503 |
| FriOI | GRGCYC | 1 cut(s) | 480 |
| FspBI | CTAG | 1 cut(s) | 122 |
| GlaI | GCGC | 4 cut(s) | 602, 782, 940, 981 |
| GsuI | CTGGAG | 1 cut(s) | 11 |
| HaeII | RGCGCY | 4 cut(s) | 604, 784, 942, 983 |
| HaeIII | GGCC | 1 cut(s) | 927 |
| HhaI | GCGC | 4 cut(s) | 603, 783, 941, 982 |
| Hin1I | GRCGYC | 3 cut(s) | 601, 781, 939 |
| Hin1II | CATG | 2 cut(s) | 476, 512 |
| Hin6I | GCGC | 4 cut(s) | 601, 781, 939, 980 |
| HinP1I | GCGC | 4 cut(s) | 601, 781, 939, 980 |
| HinfI | GANTC | 9 cut(s) | 20, 104, 256, 306, 388, 438, 459, 569, 749 |
| Hpy166II | GTNNAC | 1 cut(s) | 713 |
| Hpy188I | TCNGA | 1 cut(s) | 1036 |
| Hpy188III | TCNNGA | 7 cut(s) | 116, 170, 473, 540, 566, 746, 1020 |
| Hpy8I | GTNNAC | 1 cut(s) | 713 |
| HpyAV | CCTTC | 1 cut(s) | 54 |
| HpyCH4III | ACNGT | 1 cut(s) | 451 |
| HpyCH4IV | ACGT | 3 cut(s) | 96, 640, 715 |
| HpyCH4V | TGCA | 2 cut(s) | 281, 320 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 607, 787, 977 |
| HpyF3I | CTNAG | 5 cut(s) | 294, 426, 623, 803, 951 |
| HpySE526I | ACGT | 3 cut(s) | 96, 640, 715 |
| Hsp92I | GRCGYC | 3 cut(s) | 601, 781, 939 |
| Hsp92II | CATG | 2 cut(s) | 476, 512 |
| HspAI | GCGC | 4 cut(s) | 601, 781, 939, 980 |
| KasI | GGCGCC | 3 cut(s) | 600, 780, 938 |
| Ksp22I | TGATCA | 1 cut(s) | 1036 |
| Kzo9I | GATC | 4 cut(s) | 228, 360, 542, 1036 |
| LmnI | GCTCC | 2 cut(s) | 30, 485 |
| LweI | GCATC | 1 cut(s) | 958 |
| MaeI | CTAG | 1 cut(s) | 122 |
| MaeII | ACGT | 3 cut(s) | 96, 640, 715 |
| MaeIII | GTNAC | 3 cut(s) | 101, 313, 445 |
| MalI | GATC | 4 cut(s) | 230, 362, 544, 1038 |
| MboI | GATC | 4 cut(s) | 228, 360, 542, 1036 |
| MflI | RGATCY | 1 cut(s) | 542 |
| MhlI | GDGCHC | 3 cut(s) | 480, 589, 769 |
| MluCI | AATT | 5 cut(s) | 212, 344, 535, 574, 754 |
| Mly113I | GGCGCC | 3 cut(s) | 601, 781, 939 |
| MlyI | GAGTC | 3 cut(s) | 98, 250, 382 |
| MnlI | CCTC | 8 cut(s) | 152, 590, 701, 770, 881, 901, 931, 993 |
| MroXI | GAANNNNTTC | 1 cut(s) | 189 |
| MseI | TTAA | 4 cut(s) | 198, 206, 330, 338 |
| MslI | CAYNNNNRTG | 3 cut(s) | 15, 521, 963 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 607, 787, 977 |
| NarI | GGCGCC | 3 cut(s) | 601, 781, 939 |
| NdeI | CATATG | 1 cut(s) | 12 |
| NdeII | GATC | 4 cut(s) | 228, 360, 542, 1036 |
| NlaIII | CATG | 2 cut(s) | 476, 512 |
| NlaIV | GGNNCC | 5 cut(s) | 602, 701, 782, 881, 940 |
| NmuCI | GTSAC | 1 cut(s) | 101 |
| PagI | TCATGA | 1 cut(s) | 472 |
| PdmI | GAANNNNTTC | 1 cut(s) | 189 |
| PfeI | GAWTC | 6 cut(s) | 20, 306, 438, 459, 569, 749 |
| PleI | GAGTC | 3 cut(s) | 98, 250, 382 |
| PluTI | GGCGCC | 3 cut(s) | 604, 784, 942 |
| PpsI | GAGTC | 3 cut(s) | 98, 250, 382 |
| Psp124BI | GAGCTC | 1 cut(s) | 480 |
| PspN4I | GGNNCC | 5 cut(s) | 602, 701, 782, 881, 940 |
| PspPI | GGNCC | 3 cut(s) | 647, 827, 926 |
| PstNI | CAGNNNCTG | 1 cut(s) | 278 |
| PsuI | RGATCY | 1 cut(s) | 542 |
| RsaI | GTAC | 1 cut(s) | 32 |
| RsaNI | GTAC | 1 cut(s) | 31 |
| RseI | CAYNNNNRTG | 3 cut(s) | 15, 521, 963 |
| SacI | GAGCTC | 1 cut(s) | 480 |
| SaqAI | TTAA | 4 cut(s) | 198, 206, 330, 338 |
| Sau3AI | GATC | 4 cut(s) | 228, 360, 542, 1036 |
| Sau96I | GGNCC | 3 cut(s) | 647, 827, 926 |
| SchI | GAGTC | 3 cut(s) | 98, 250, 382 |
| SduI | GDGCHC | 3 cut(s) | 480, 589, 769 |
| SetI | ASST | 9 cut(s) | 99, 123, 470, 480, 490, 643, 712, 718, 892 |
| SfaNI | GCATC | 1 cut(s) | 958 |
| SfoI | GGCGCC | 3 cut(s) | 602, 782, 940 |
| SinI | GGWCC | 2 cut(s) | 647, 827 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 15, 521, 963 |
| Sse9I | AATT | 5 cut(s) | 212, 344, 535, 574, 754 |
| SsiI | CCGC | 1 cut(s) | 145 |
| SspDI | GGCGCC | 3 cut(s) | 600, 780, 938 |
| SspMI | CTAG | 1 cut(s) | 122 |
| SstI | GAGCTC | 1 cut(s) | 480 |
| TaaI | ACNGT | 1 cut(s) | 451 |
| TaiI | ACGT | 3 cut(s) | 99, 643, 718 |
| TaqI | TCGA | 4 cut(s) | 304, 436, 539, 1021 |
| TasI | AATT | 5 cut(s) | 212, 344, 535, 574, 754 |
| TfiI | GAWTC | 6 cut(s) | 20, 306, 438, 459, 569, 749 |
| Tru1I | TTAA | 4 cut(s) | 198, 206, 330, 338 |
| Tru9I | TTAA | 4 cut(s) | 198, 206, 330, 338 |
| TseFI | GTSAC | 1 cut(s) | 101 |
| Tsp45I | GTSAC | 1 cut(s) | 101 |
| TspDTI | ATGAA | 5 cut(s) | 56, 60, 402, 461, 506 |
| TspGWI | ACGGA | 4 cut(s) | 89, 535, 712, 892 |
| VpaK11BI | GGWCC | 2 cut(s) | 647, 827 |
| XapI | RAATTY | 2 cut(s) | 212, 344 |
| XmnI | GAANNNNTTC | 1 cut(s) | 189 |
| XspI | CTAG | 1 cut(s) | 122 |