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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 494 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 597 |
| AcoI | YGGCCR | 1 cut(s) | 481 |
| AcsI | RAATTY | 1 cut(s) | 173 |
| AcyI | GRCGYC | 1 cut(s) | 495 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 423, 597 |
| AgsI | TTSAA | 3 cut(s) | 121, 134, 532 |
| AjiI | CACGTC | 1 cut(s) | 88 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 33, 65 |
| AluBI | AGCT | 3 cut(s) | 307, 317, 668 |
| AluI | AGCT | 3 cut(s) | 307, 317, 668 |
| Alw21I | GWGCWC | 2 cut(s) | 309, 561 |
| Alw26I | GTCTC | 1 cut(s) | 37 |
| AoxI | GGCC | 1 cut(s) | 481 |
| ApoI | RAATTY | 1 cut(s) | 173 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 150 |
| AspLEI | GCGC | 1 cut(s) | 497 |
| AsuHPI | GGTGA | 1 cut(s) | 625 |
| BaeGI | GKGCMC | 1 cut(s) | 604 |
| BalI | TGGCCA | 1 cut(s) | 483 |
| BanI | GGYRCC | 1 cut(s) | 494 |
| BanII | GRGCYC | 1 cut(s) | 309 |
| BbsI | GAAGAC | 2 cut(s) | 18, 221 |
| Bbv12I | GWGCWC | 2 cut(s) | 309, 561 |
| BccI | CCATC | 3 cut(s) | 87, 241, 522 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 260, 294 |
| BciVI | GTATCC | 1 cut(s) | 598 |
| BcoDI | GTCTC | 1 cut(s) | 37 |
| BfaI | CTAG | 2 cut(s) | 83, 704 |
| BfmI | CTRYAG | 1 cut(s) | 262 |
| BfoI | RGCGCY | 1 cut(s) | 498 |
| BfuI | GTATCC | 1 cut(s) | 598 |
| BmgBI | CACGTC | 1 cut(s) | 88 |
| BmiI | GGNNCC | 2 cut(s) | 437, 496 |
| BmsI | GCATC | 1 cut(s) | 187 |
| BpiI | GAAGAC | 2 cut(s) | 18, 221 |
| Bsa29I | ATCGAT | 1 cut(s) | 270 |
| BsaHI | GRCGYC | 1 cut(s) | 495 |
| BsaI | GGTCTC | 1 cut(s) | 37 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 423, 597 |
| Bse1I | ACTGG | 1 cut(s) | 591 |
| Bse3DI | GCAATG | 1 cut(s) | 207 |
| BseCI | ATCGAT | 1 cut(s) | 270 |
| BseGI | GGATG | 2 cut(s) | 57, 345 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 423, 597 |
| BseMI | GCAATG | 1 cut(s) | 207 |
| BseNI | ACTGG | 1 cut(s) | 591 |
| BseSI | GKGCMC | 1 cut(s) | 604 |
| BshFI | GGCC | 1 cut(s) | 483 |
| BshNI | GGYRCC | 1 cut(s) | 494 |
| BshVI | ATCGAT | 1 cut(s) | 270 |
| BsiHKAI | GWGCWC | 2 cut(s) | 309, 561 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 423, 597 |
| BsmAI | GTCTC | 1 cut(s) | 37 |
| BsnI | GGCC | 1 cut(s) | 483 |
| Bso31I | GGTCTC | 1 cut(s) | 37 |
| Bsp1286I | GDGCHC | 3 cut(s) | 309, 561, 604 |
| Bsp143I | GATC | 5 cut(s) | 189, 288, 371, 688, 700 |
| BspANI | GGCC | 1 cut(s) | 483 |
| BspDI | ATCGAT | 1 cut(s) | 270 |
| BspHI | TCATGA | 2 cut(s) | 301, 619 |
| BspLI | GGNNCC | 2 cut(s) | 437, 496 |
| BspT107I | GGYRCC | 1 cut(s) | 494 |
| BspTNI | GGTCTC | 1 cut(s) | 37 |
| BsrDI | GCAATG | 1 cut(s) | 207 |
| BsrI | ACTGG | 1 cut(s) | 591 |
| BssMI | GATC | 5 cut(s) | 189, 288, 371, 688, 700 |
| BssNI | GRCGYC | 1 cut(s) | 495 |
| Bst6I | CTCTTC | 2 cut(s) | 436, 655 |
| BstACI | GRCGYC | 1 cut(s) | 495 |
| BstDEI | CTNAG | 1 cut(s) | 507 |
| BstF5I | GGATG | 2 cut(s) | 57, 345 |
| BstH2I | RGCGCY | 1 cut(s) | 498 |
| BstHHI | GCGC | 1 cut(s) | 497 |
| BstKTI | GATC | 5 cut(s) | 192, 291, 374, 691, 703 |
| BstMAI | GTCTC | 1 cut(s) | 37 |
| BstMBI | GATC | 5 cut(s) | 189, 288, 371, 688, 700 |
| BstSFI | CTRYAG | 1 cut(s) | 262 |
| BstSLI | GKGCMC | 1 cut(s) | 604 |
| BstV2I | GAAGAC | 2 cut(s) | 18, 221 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 491 |
| Bsu15I | ATCGAT | 1 cut(s) | 270 |
| BsuI | GTATCC | 1 cut(s) | 598 |
| BsuRI | GGCC | 1 cut(s) | 483 |
| BsuTUI | ATCGAT | 1 cut(s) | 270 |
| BtrI | CACGTC | 1 cut(s) | 88 |
| BtsCI | GGATG | 2 cut(s) | 57, 345 |
| BtsIMutI | CAGTG | 1 cut(s) | 381 |
| CciI | TCATGA | 2 cut(s) | 301, 619 |
| CfoI | GCGC | 1 cut(s) | 497 |
| ClaI | ATCGAT | 1 cut(s) | 270 |
| CseI | GACGC | 1 cut(s) | 533 |
| CviAII | CATG | 4 cut(s) | 235, 302, 485, 620 |
| CviJI | RGCY | 7 cut(s) | 102, 307, 317, 337, 483, 513, 668 |
| CviKI_1 | RGCY | 7 cut(s) | 102, 307, 317, 337, 483, 513, 668 |
| DdeI | CTNAG | 1 cut(s) | 507 |
| DinI | GGCGCC | 1 cut(s) | 496 |
| DpnI | GATC | 5 cut(s) | 191, 290, 373, 690, 702 |
| DpnII | GATC | 5 cut(s) | 189, 288, 371, 688, 700 |
| EaeI | YGGCCR | 1 cut(s) | 481 |
| Eam1104I | CTCTTC | 2 cut(s) | 436, 655 |
| EarI | CTCTTC | 2 cut(s) | 436, 655 |
| Ecl136II | GAGCTC | 1 cut(s) | 307 |
| Eco24I | GRGCYC | 1 cut(s) | 309 |
| Eco31I | GGTCTC | 1 cut(s) | 37 |
| Eco53kI | GAGCTC | 1 cut(s) | 307 |
| EcoICRI | GAGCTC | 1 cut(s) | 307 |
| EcoRI | GAATTC | 1 cut(s) | 173 |
| EcoT38I | GRGCYC | 1 cut(s) | 309 |
| EgeI | GGCGCC | 1 cut(s) | 496 |
| EheI | GGCGCC | 1 cut(s) | 496 |
| FaeI | CATG | 4 cut(s) | 238, 305, 488, 623 |
| FatI | CATG | 4 cut(s) | 234, 301, 484, 619 |
| FokI | GGATG | 2 cut(s) | 44, 332 |
| FriOI | GRGCYC | 1 cut(s) | 309 |
| FspBI | CTAG | 2 cut(s) | 83, 704 |
| GlaI | GCGC | 1 cut(s) | 496 |
| HaeII | RGCGCY | 1 cut(s) | 498 |
| HaeIII | GGCC | 1 cut(s) | 483 |
| HgaI | GACGC | 1 cut(s) | 533 |
| HhaI | GCGC | 1 cut(s) | 497 |
| Hin1I | GRCGYC | 1 cut(s) | 495 |
| Hin1II | CATG | 4 cut(s) | 238, 305, 488, 623 |
| Hin6I | GCGC | 1 cut(s) | 495 |
| HinP1I | GCGC | 1 cut(s) | 495 |
| HinfI | GANTC | 4 cut(s) | 65, 217, 267, 398 |
| HphI | GGTGA | 1 cut(s) | 625 |
| Hpy188I | TCNGA | 2 cut(s) | 145, 397 |
| Hpy188III | TCNNGA | 7 cut(s) | 77, 131, 302, 369, 620, 692, 704 |
| HpyAV | CCTTC | 3 cut(s) | 15, 238, 650 |
| HpyCH4IV | ACGT | 1 cut(s) | 87 |
| HpyCH4V | TGCA | 3 cut(s) | 200, 242, 281 |
| HpyF3I | CTNAG | 1 cut(s) | 507 |
| HpySE526I | ACGT | 1 cut(s) | 87 |
| Hsp92I | GRCGYC | 1 cut(s) | 495 |
| Hsp92II | CATG | 4 cut(s) | 238, 305, 488, 623 |
| HspAI | GCGC | 1 cut(s) | 495 |
| KasI | GGCGCC | 1 cut(s) | 494 |
| Kzo9I | GATC | 5 cut(s) | 189, 288, 371, 688, 700 |
| LmnI | GCTCC | 1 cut(s) | 314 |
| LpnPI | CCDG | 4 cut(s) | 31, 83, 465, 604 |
| LweI | GCATC | 1 cut(s) | 187 |
| MaeI | CTAG | 2 cut(s) | 83, 704 |
| MaeII | ACGT | 1 cut(s) | 87 |
| MaeIII | GTNAC | 4 cut(s) | 62, 274, 410, 631 |
| MalI | GATC | 5 cut(s) | 191, 290, 373, 690, 702 |
| MboI | GATC | 5 cut(s) | 189, 288, 371, 688, 700 |
| MboII | GAAGA | 9 cut(s) | 20, 23, 53, 226, 367, 453, 672, 698, 707 |
| MhlI | GDGCHC | 3 cut(s) | 309, 561, 604 |
| MlsI | TGGCCA | 1 cut(s) | 483 |
| MluCI | AATT | 4 cut(s) | 173, 364, 403, 627 |
| MluNI | TGGCCA | 1 cut(s) | 483 |
| Mly113I | GGCGCC | 1 cut(s) | 495 |
| MlyI | GAGTC | 2 cut(s) | 59, 211 |
| MmeI | TCCRAC | 1 cut(s) | 292 |
| MnlI | CCTC | 8 cut(s) | 113, 437, 457, 461, 487, 549, 608, 646 |
| Mox20I | TGGCCA | 1 cut(s) | 483 |
| MroXI | GAANNNNTTC | 1 cut(s) | 150 |
| MscI | TGGCCA | 1 cut(s) | 483 |
| MseI | TTAA | 2 cut(s) | 159, 167 |
| MslI | CAYNNNNRTG | 4 cut(s) | 350, 489, 519, 564 |
| Msp20I | TGGCCA | 1 cut(s) | 483 |
| NarI | GGCGCC | 1 cut(s) | 495 |
| NdeII | GATC | 5 cut(s) | 189, 288, 371, 688, 700 |
| NlaIII | CATG | 4 cut(s) | 238, 305, 488, 623 |
| NlaIV | GGNNCC | 2 cut(s) | 437, 496 |
| NmuCI | GTSAC | 2 cut(s) | 62, 631 |
| PagI | TCATGA | 2 cut(s) | 301, 619 |
| PdmI | GAANNNNTTC | 1 cut(s) | 150 |
| PfeI | GAWTC | 2 cut(s) | 267, 398 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 597 |
| PleI | GAGTC | 2 cut(s) | 59, 211 |
| PluTI | GGCGCC | 1 cut(s) | 498 |
| PpsI | GAGTC | 2 cut(s) | 59, 211 |
| Psp124BI | GAGCTC | 1 cut(s) | 309 |
| PspN4I | GGNNCC | 2 cut(s) | 437, 496 |
| RseI | CAYNNNNRTG | 4 cut(s) | 350, 489, 519, 564 |
| SacI | GAGCTC | 1 cut(s) | 309 |
| SaqAI | TTAA | 2 cut(s) | 159, 167 |
| Sau3AI | GATC | 5 cut(s) | 189, 288, 371, 688, 700 |
| SchI | GAGTC | 2 cut(s) | 59, 211 |
| SduI | GDGCHC | 3 cut(s) | 309, 561, 604 |
| SfaNI | GCATC | 1 cut(s) | 187 |
| SfcI | CTRYAG | 1 cut(s) | 262 |
| SfoI | GGCGCC | 1 cut(s) | 496 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 350, 489, 519, 564 |
| Sse9I | AATT | 4 cut(s) | 173, 364, 403, 627 |
| SspDI | GGCGCC | 1 cut(s) | 494 |
| SspMI | CTAG | 2 cut(s) | 83, 704 |
| SstI | GAGCTC | 1 cut(s) | 309 |
| TaiI | ACGT | 1 cut(s) | 90 |
| TaqI | TCGA | 3 cut(s) | 39, 270, 368 |
| TasI | AATT | 4 cut(s) | 173, 364, 403, 627 |
| TfiI | GAWTC | 2 cut(s) | 267, 398 |
| Tru1I | TTAA | 2 cut(s) | 159, 167 |
| Tru9I | TTAA | 2 cut(s) | 159, 167 |
| TscAI | CASTG | 1 cut(s) | 381 |
| TseFI | GTSAC | 2 cut(s) | 62, 631 |
| Tsp45I | GTSAC | 2 cut(s) | 62, 631 |
| TspDTI | ATGAA | 6 cut(s) | 17, 21, 272, 290, 335, 636 |
| TspGWI | ACGGA | 2 cut(s) | 50, 448 |
| TspRI | CASTG | 1 cut(s) | 381 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 597 |
| XapI | RAATTY | 1 cut(s) | 173 |
| XbaI | TCTAGA | 1 cut(s) | 703 |
| XmnI | GAANNNNTTC | 1 cut(s) | 150 |
| XspI | CTAG | 2 cut(s) | 83, 704 |