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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 273, 318 |
| AarI | CACCTGC | 2 cut(s) | 59, 129 |
| Acc16I | TGCGCA | 1 cut(s) | 125 |
| Acc36I | ACCTGC | 2 cut(s) | 59, 129 |
| AccB1I | GGYRCC | 1 cut(s) | 515 |
| AccIII | TCCGGA | 1 cut(s) | 154 |
| AciI | CCGC | 4 cut(s) | 62, 142, 171, 394 |
| AclWI | GGATC | 2 cut(s) | 152, 165 |
| AdeI | CACNNNGTG | 1 cut(s) | 440 |
| AfaI | GTAC | 1 cut(s) | 572 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 332, 333, 403, 456, 529 |
| AflIII | ACRYGT | 1 cut(s) | 452 |
| AgsI | TTSAA | 2 cut(s) | 279, 628 |
| AjiI | CACGTC | 1 cut(s) | 152 |
| AjnI | CCWGG | 1 cut(s) | 402 |
| Alw21I | GWGCWC | 1 cut(s) | 648 |
| Alw44I | GTGCAC | 1 cut(s) | 644 |
| AlwI | GGATC | 2 cut(s) | 152, 165 |
| Aor13HI | TCCGGA | 1 cut(s) | 154 |
| AoxI | GGCC | 3 cut(s) | 43, 113, 382 |
| ApaI | GGGCCC | 1 cut(s) | 386 |
| ApaLI | GTGCAC | 1 cut(s) | 644 |
| ApeKI | GCWGC | 8 cut(s) | 28, 71, 98, 219, 222, 225, 228, 656 |
| AspA2I | CCTAGG | 1 cut(s) | 527 |
| AspLEI | GCGC | 4 cut(s) | 126, 186, 339, 497 |
| AspS9I | GGNCC | 3 cut(s) | 382, 383, 550 |
| AsuC2I | CCSGG | 1 cut(s) | 539 |
| AsuHPI | GGTGA | 3 cut(s) | 40, 110, 604 |
| AvaII | GGWCC | 1 cut(s) | 550 |
| AvrII | CCTAGG | 1 cut(s) | 527 |
| BaeGI | GKGCMC | 2 cut(s) | 386, 648 |
| BamHI | GGATCC | 1 cut(s) | 157 |
| BanI | GGYRCC | 1 cut(s) | 515 |
| BanII | GRGCYC | 1 cut(s) | 386 |
| BauI | CACGAG | 1 cut(s) | 260 |
| Bbv12I | GWGCWC | 1 cut(s) | 648 |
| BbvI | GCAGC | 8 cut(s) | 15, 58, 85, 231, 234, 237, 240, 668 |
| BccI | CCATC | 3 cut(s) | 31, 74, 101 |
| BciT130I | CCWGG | 1 cut(s) | 404 |
| BciVI | GTATCC | 2 cut(s) | 424, 485 |
| BcnI | CCSGG | 1 cut(s) | 539 |
| BfaI | CTAG | 4 cut(s) | 8, 83, 480, 528 |
| BfmI | CTRYAG | 1 cut(s) | 217 |
| BfoI | RGCGCY | 2 cut(s) | 187, 498 |
| BfuAI | ACCTGC | 2 cut(s) | 59, 129 |
| BfuI | GTATCC | 2 cut(s) | 424, 485 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 42, 112 |
| BisI | GCNGC | 8 cut(s) | 29, 72, 99, 220, 223, 226, 229, 657 |
| BlnI | CCTAGG | 1 cut(s) | 527 |
| BlsI | GCNGC | 8 cut(s) | 30, 73, 100, 221, 224, 227, 230, 658 |
| Bme1390I | CCNGG | 2 cut(s) | 404, 539 |
| Bme18I | GGWCC | 1 cut(s) | 550 |
| BmgBI | CACGTC | 1 cut(s) | 152 |
| BmgT120I | GGNCC | 3 cut(s) | 382, 383, 550 |
| BmiI | GGNNCC | 4 cut(s) | 159, 384, 517, 551 |
| BmrFI | CCNGG | 2 cut(s) | 404, 539 |
| BmsI | GCATC | 1 cut(s) | 643 |
| BpmI | CTGGAG | 1 cut(s) | 61 |
| BpuMI | CCSGG | 1 cut(s) | 539 |
| BsaBI | GATNNNNATC | 1 cut(s) | 606 |
| BsaJI | CCNNGG | 1 cut(s) | 527 |
| BsaWI | WCCGGW | 1 cut(s) | 154 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 171, 201, 451, 481, 508, 538 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 332, 333, 403, 456, 529 |
| Bse118I | RCCGGY | 2 cut(s) | 41, 111 |
| Bse1I | ACTGG | 1 cut(s) | 213 |
| Bse8I | GATNNNNATC | 1 cut(s) | 606 |
| BseAI | TCCGGA | 1 cut(s) | 154 |
| BseBI | CCWGG | 1 cut(s) | 404 |
| BseDI | CCNNGG | 1 cut(s) | 527 |
| BseGI | GGATG | 1 cut(s) | 658 |
| BseJI | GATNNNNATC | 1 cut(s) | 606 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 332, 333, 403, 456, 529 |
| BseMII | CTCAG | 2 cut(s) | 231, 545 |
| BseNI | ACTGG | 1 cut(s) | 213 |
| BseSI | GKGCMC | 2 cut(s) | 386, 648 |
| BseXI | GCAGC | 8 cut(s) | 15, 58, 85, 231, 234, 237, 240, 668 |
| BseYI | CCCAGC | 6 cut(s) | 12, 17, 32, 87, 102, 161 |
| BsgI | GTGCAG | 1 cut(s) | 37 |
| BshFI | GGCC | 3 cut(s) | 45, 115, 384 |
| BshNI | GGYRCC | 1 cut(s) | 515 |
| BsiHKAI | GWGCWC | 1 cut(s) | 648 |
| BsiSI | CCGG | 4 cut(s) | 42, 112, 155, 539 |
| BslFI | GGGAC | 3 cut(s) | 378, 387, 563 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 332, 333, 403, 456, 529 |
| BsmFI | GGGAC | 3 cut(s) | 378, 387, 563 |
| BsmI | GAATGC | 1 cut(s) | 300 |
| BsnI | GGCC | 3 cut(s) | 45, 115, 384 |
| Bsp120I | GGGCCC | 1 cut(s) | 382 |
| Bsp1286I | GDGCHC | 2 cut(s) | 386, 648 |
| Bsp13I | TCCGGA | 1 cut(s) | 154 |
| Bsp143I | GATC | 1 cut(s) | 157 |
| BspACI | CCGC | 4 cut(s) | 62, 142, 171, 394 |
| BspANI | GGCC | 3 cut(s) | 45, 115, 384 |
| BspCNI | CTCAG | 2 cut(s) | 232, 546 |
| BspEI | TCCGGA | 1 cut(s) | 154 |
| BspHI | TCATGA | 1 cut(s) | 304 |
| BspLI | GGNNCC | 4 cut(s) | 159, 384, 517, 551 |
| BspMAI | CTGCAG | 1 cut(s) | 221 |
| BspMI | ACCTGC | 2 cut(s) | 59, 129 |
| BspPI | GGATC | 2 cut(s) | 152, 165 |
| BspT107I | GGYRCC | 1 cut(s) | 515 |
| BsrFI | RCCGGY | 2 cut(s) | 41, 111 |
| BsrI | ACTGG | 1 cut(s) | 213 |
| BssAI | RCCGGY | 2 cut(s) | 41, 111 |
| BssECI | CCNNGG | 1 cut(s) | 527 |
| BssMI | GATC | 1 cut(s) | 157 |
| BssSI | CACGAG | 1 cut(s) | 260 |
| BssT1I | CCWWGG | 1 cut(s) | 527 |
| Bst2BI | CACGAG | 1 cut(s) | 260 |
| Bst2UI | CCWGG | 1 cut(s) | 404 |
| Bst4CI | ACNGT | 1 cut(s) | 353 |
| BstDEI | CTNAG | 2 cut(s) | 240, 554 |
| BstF5I | GGATG | 1 cut(s) | 658 |
| BstH2I | RGCGCY | 2 cut(s) | 187, 498 |
| BstHHI | GCGC | 4 cut(s) | 126, 186, 339, 497 |
| BstKTI | GATC | 1 cut(s) | 160 |
| BstMBI | GATC | 1 cut(s) | 157 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 42, 51, 112, 121, 209, 225, 228, 343 |
| BstNI | CCWGG | 1 cut(s) | 404 |
| BstNSI | RCATGY | 1 cut(s) | 456 |
| BstSCI | CCNGG | 2 cut(s) | 402, 537 |
| BstSFI | CTRYAG | 1 cut(s) | 217 |
| BstSLI | GKGCMC | 2 cut(s) | 386, 648 |
| BstV1I | GCAGC | 8 cut(s) | 15, 58, 85, 231, 234, 237, 240, 668 |
| BstX2I | RGATCY | 1 cut(s) | 157 |
| BstYI | RGATCY | 1 cut(s) | 157 |
| BsuI | GTATCC | 2 cut(s) | 424, 485 |
| BsuRI | GGCC | 3 cut(s) | 45, 115, 384 |
| BtgZI | GCGATG | 3 cut(s) | 9, 52, 79 |
| BtrI | CACGTC | 1 cut(s) | 152 |
| BtsCI | GGATG | 1 cut(s) | 658 |
| BtsIMutI | CAGTG | 1 cut(s) | 206 |
| BveI | ACCTGC | 2 cut(s) | 59, 129 |
| CciI | TCATGA | 1 cut(s) | 304 |
| CfoI | GCGC | 4 cut(s) | 126, 186, 339, 497 |
| Cfr10I | RCCGGY | 2 cut(s) | 41, 111 |
| Cfr13I | GGNCC | 3 cut(s) | 382, 383, 550 |
| Csp6I | GTAC | 1 cut(s) | 571 |
| CviAII | CATG | 4 cut(s) | 248, 305, 368, 453 |
| CviQI | GTAC | 1 cut(s) | 571 |
| DdeI | CTNAG | 2 cut(s) | 240, 554 |
| DpnI | GATC | 1 cut(s) | 159 |
| DpnII | GATC | 1 cut(s) | 157 |
| DraIII | CACNNNGTG | 1 cut(s) | 440 |
| Eco130I | CCWWGG | 1 cut(s) | 527 |
| Eco24I | GRGCYC | 1 cut(s) | 386 |
| Eco47I | GGWCC | 1 cut(s) | 550 |
| EcoO109I | RGGNCCY | 1 cut(s) | 550 |
| EcoRII | CCWGG | 1 cut(s) | 402 |
| EcoT14I | CCWWGG | 1 cut(s) | 527 |
| EcoT38I | GRGCYC | 1 cut(s) | 386 |
| ErhI | CCWWGG | 1 cut(s) | 527 |
| FaeI | CATG | 4 cut(s) | 251, 308, 371, 456 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 558, 590 |
| FaqI | GGGAC | 3 cut(s) | 378, 387, 563 |
| FatI | CATG | 4 cut(s) | 247, 304, 367, 452 |
| FauI | CCCGC | 2 cut(s) | 69, 149 |
| Fnu4HI | GCNGC | 8 cut(s) | 29, 72, 99, 220, 223, 226, 229, 657 |
| FokI | GGATG | 1 cut(s) | 665 |
| FriOI | GRGCYC | 1 cut(s) | 386 |
| Fsp4HI | GCNGC | 8 cut(s) | 29, 72, 99, 220, 223, 226, 229, 657 |
| FspBI | CTAG | 4 cut(s) | 8, 83, 480, 528 |
| FspI | TGCGCA | 1 cut(s) | 125 |
| GlaI | GCGC | 4 cut(s) | 125, 185, 338, 496 |
| GluI | GCNGC | 8 cut(s) | 29, 72, 99, 220, 223, 226, 229, 657 |
| GsaI | CCCAGC | 6 cut(s) | 16, 21, 36, 91, 106, 165 |
| GsuI | CTGGAG | 1 cut(s) | 61 |
| HaeII | RGCGCY | 2 cut(s) | 187, 498 |
| HaeIII | GGCC | 3 cut(s) | 45, 115, 384 |
| HapII | CCGG | 4 cut(s) | 42, 112, 155, 539 |
| HhaI | GCGC | 4 cut(s) | 126, 186, 339, 497 |
| Hin1II | CATG | 4 cut(s) | 251, 308, 371, 456 |
| Hin6I | GCGC | 4 cut(s) | 124, 184, 337, 495 |
| HinP1I | GCGC | 4 cut(s) | 124, 184, 337, 495 |
| HpaII | CCGG | 4 cut(s) | 42, 112, 155, 539 |
| HphI | GGTGA | 3 cut(s) | 40, 110, 604 |
| Hpy166II | GTNNAC | 2 cut(s) | 571, 646 |
| Hpy188I | TCNGA | 1 cut(s) | 191 |
| Hpy188III | TCNNGA | 4 cut(s) | 155, 262, 279, 305 |
| Hpy8I | GTNNAC | 2 cut(s) | 571, 646 |
| HpyAV | CCTTC | 1 cut(s) | 401 |
| HpyCH4III | ACNGT | 1 cut(s) | 353 |
| HpyCH4IV | ACGT | 2 cut(s) | 151, 376 |
| HpyCH4V | TGCA | 9 cut(s) | 54, 178, 197, 219, 323, 417, 578, 646, 656 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 42, 51, 112, 121, 209, 225, 228, 343 |
| HpyF3I | CTNAG | 2 cut(s) | 240, 554 |
| HpySE526I | ACGT | 2 cut(s) | 151, 376 |
| Hsp92II | CATG | 4 cut(s) | 251, 308, 371, 456 |
| HspAI | GCGC | 4 cut(s) | 124, 184, 337, 495 |
| Kpn2I | TCCGGA | 1 cut(s) | 154 |
| Kzo9I | GATC | 1 cut(s) | 157 |
| LmnI | GCTCC | 1 cut(s) | 343 |
| Lsp1109I | GCAGC | 8 cut(s) | 15, 58, 85, 231, 234, 237, 240, 668 |
| LweI | GCATC | 1 cut(s) | 643 |
| MaeI | CTAG | 4 cut(s) | 8, 83, 480, 528 |
| MaeII | ACGT | 2 cut(s) | 151, 376 |
| MalI | GATC | 1 cut(s) | 159 |
| MboI | GATC | 1 cut(s) | 157 |
| MboII | GAAGA | 5 cut(s) | 593, 596, 599, 611, 647 |
| MflI | RGATCY | 1 cut(s) | 157 |
| MhlI | GDGCHC | 2 cut(s) | 386, 648 |
| MluCI | AATT | 3 cut(s) | 268, 274, 313 |
| MroI | TCCGGA | 1 cut(s) | 154 |
| MslI | CAYNNNNRTG | 2 cut(s) | 260, 651 |
| MspI | CCGG | 4 cut(s) | 42, 112, 155, 539 |
| MspR9I | CCNGG | 2 cut(s) | 404, 539 |
| Mva1269I | GAATGC | 1 cut(s) | 300 |
| MvaI | CCWGG | 1 cut(s) | 404 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 42, 51, 112, 121, 209, 225, 228, 343 |
| NciI | CCSGG | 1 cut(s) | 539 |
| NdeII | GATC | 1 cut(s) | 157 |
| NlaIII | CATG | 4 cut(s) | 251, 308, 371, 456 |
| NlaIV | GGNNCC | 4 cut(s) | 159, 384, 517, 551 |
| NsbI | TGCGCA | 1 cut(s) | 125 |
| NspI | RCATGY | 1 cut(s) | 456 |
| PagI | TCATGA | 1 cut(s) | 304 |
| PaqCI | CACCTGC | 2 cut(s) | 59, 129 |
| PciI | ACATGT | 1 cut(s) | 452 |
| PctI | GAATGC | 1 cut(s) | 300 |
| PkrI | GCNGC | 8 cut(s) | 30, 73, 100, 221, 224, 227, 230, 658 |
| PpuMI | RGGWCCY | 1 cut(s) | 550 |
| PscI | ACATGT | 1 cut(s) | 452 |
| PsiI | TTATAA | 2 cut(s) | 273, 318 |
| Psp5II | RGGWCCY | 1 cut(s) | 550 |
| Psp6I | CCWGG | 1 cut(s) | 402 |
| PspFI | CCCAGC | 6 cut(s) | 12, 17, 32, 87, 102, 161 |
| PspGI | CCWGG | 1 cut(s) | 402 |
| PspN4I | GGNNCC | 4 cut(s) | 159, 384, 517, 551 |
| PspOMI | GGGCCC | 1 cut(s) | 382 |
| PspPI | GGNCC | 3 cut(s) | 382, 383, 550 |
| PspPPI | RGGWCCY | 1 cut(s) | 550 |
| PstI | CTGCAG | 1 cut(s) | 221 |
| PsuI | RGATCY | 1 cut(s) | 157 |
| RsaI | GTAC | 1 cut(s) | 572 |
| RsaNI | GTAC | 1 cut(s) | 571 |
| RseI | CAYNNNNRTG | 2 cut(s) | 260, 651 |
| SatI | GCNGC | 8 cut(s) | 29, 72, 99, 220, 223, 226, 229, 657 |
| Sau3AI | GATC | 1 cut(s) | 157 |
| Sau96I | GGNCC | 3 cut(s) | 382, 383, 550 |
| ScrFI | CCNGG | 2 cut(s) | 404, 539 |
| SduI | GDGCHC | 2 cut(s) | 386, 648 |
| SetI | ASST | 8 cut(s) | 53, 123, 154, 170, 241, 379, 555, 576 |
| SfaNI | GCATC | 1 cut(s) | 643 |
| SfcI | CTRYAG | 1 cut(s) | 217 |
| SinI | GGWCC | 1 cut(s) | 550 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 260, 651 |
| Sse9I | AATT | 3 cut(s) | 268, 274, 313 |
| SsiI | CCGC | 4 cut(s) | 62, 142, 171, 394 |
| SspMI | CTAG | 4 cut(s) | 8, 83, 480, 528 |
| StyD4I | CCNGG | 2 cut(s) | 402, 537 |
| StyI | CCWWGG | 1 cut(s) | 527 |
| TaaI | ACNGT | 1 cut(s) | 353 |
| TaiI | ACGT | 2 cut(s) | 154, 379 |
| TasI | AATT | 3 cut(s) | 268, 274, 313 |
| TscAI | CASTG | 1 cut(s) | 213 |
| TseI | GCWGC | 8 cut(s) | 28, 71, 98, 219, 222, 225, 228, 656 |
| TspDTI | ATGAA | 3 cut(s) | 293, 648, 654 |
| TspRI | CASTG | 1 cut(s) | 213 |
| VneI | GTGCAC | 1 cut(s) | 644 |
| VpaK11BI | GGWCC | 1 cut(s) | 550 |
| XceI | RCATGY | 1 cut(s) | 456 |
| XmaJI | CCTAGG | 1 cut(s) | 527 |
| XspI | CTAG | 4 cut(s) | 8, 83, 480, 528 |