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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 543 |
| AciI | CCGC | 4 cut(s) | 79, 286, 577, 609 |
| AclWI | GGATC | 2 cut(s) | 377, 447 |
| AcuI | CTGAAG | 1 cut(s) | 177 |
| AgsI | TTSAA | 1 cut(s) | 301 |
| AjiI | CACGTC | 1 cut(s) | 136 |
| AluBI | AGCT | 5 cut(s) | 155, 161, 388, 590, 641 |
| AluI | AGCT | 5 cut(s) | 155, 161, 388, 590, 641 |
| Alw21I | GWGCWC | 1 cut(s) | 592 |
| AlwI | GGATC | 2 cut(s) | 377, 447 |
| Ama87I | CYCGRG | 2 cut(s) | 49, 119 |
| AoxI | GGCC | 1 cut(s) | 93 |
| ApeKI | GCWGC | 1 cut(s) | 179 |
| AsuHPI | GGTGA | 1 cut(s) | 598 |
| AvaI | CYCGRG | 2 cut(s) | 49, 119 |
| BanII | GRGCYC | 2 cut(s) | 499, 592 |
| BauI | CACGAG | 1 cut(s) | 591 |
| Bbv12I | GWGCWC | 1 cut(s) | 592 |
| BbvI | GCAGC | 1 cut(s) | 191 |
| BccI | CCATC | 3 cut(s) | 92, 215, 267 |
| BciVI | GTATCC | 2 cut(s) | 103, 520 |
| BfaI | CTAG | 4 cut(s) | 126, 263, 543, 677 |
| BfuI | GTATCC | 2 cut(s) | 103, 520 |
| BisI | GCNGC | 1 cut(s) | 180 |
| BlsI | GCNGC | 1 cut(s) | 181 |
| BmeT110I | CYCGRG | 2 cut(s) | 49, 119 |
| BmgBI | CACGTC | 1 cut(s) | 136 |
| BpuEI | CTTGAG | 1 cut(s) | 74 |
| BsaJI | CCNNGG | 1 cut(s) | 456 |
| Bse1I | ACTGG | 1 cut(s) | 49 |
| Bse3DI | GCAATG | 1 cut(s) | 405 |
| BseDI | CCNNGG | 1 cut(s) | 456 |
| BseGI | GGATG | 2 cut(s) | 210, 426 |
| BseMI | GCAATG | 1 cut(s) | 405 |
| BseNI | ACTGG | 1 cut(s) | 49 |
| BseXI | GCAGC | 1 cut(s) | 191 |
| BshFI | GGCC | 1 cut(s) | 95 |
| BsiHKAI | GWGCWC | 1 cut(s) | 592 |
| BsiHKCI | CYCGRG | 2 cut(s) | 49, 119 |
| BsnI | GGCC | 1 cut(s) | 95 |
| BsoBI | CYCGRG | 2 cut(s) | 49, 119 |
| Bsp1286I | GDGCHC | 2 cut(s) | 499, 592 |
| Bsp143I | GATC | 5 cut(s) | 369, 405, 452, 661, 673 |
| BspACI | CCGC | 4 cut(s) | 79, 286, 577, 609 |
| BspANI | GGCC | 1 cut(s) | 95 |
| BspHI | TCATGA | 2 cut(s) | 70, 382 |
| BspPI | GGATC | 2 cut(s) | 377, 447 |
| BsrDI | GCAATG | 1 cut(s) | 405 |
| BsrI | ACTGG | 1 cut(s) | 49 |
| BssECI | CCNNGG | 1 cut(s) | 456 |
| BssMI | GATC | 5 cut(s) | 369, 405, 452, 661, 673 |
| BssSI | CACGAG | 1 cut(s) | 591 |
| BssT1I | CCWWGG | 1 cut(s) | 456 |
| Bst2BI | CACGAG | 1 cut(s) | 591 |
| BstC8I | GCNNGC | 1 cut(s) | 153 |
| BstDEI | CTNAG | 2 cut(s) | 184, 521 |
| BstEII | GGTNACC | 1 cut(s) | 572 |
| BstF5I | GGATG | 2 cut(s) | 210, 426 |
| BstKTI | GATC | 5 cut(s) | 372, 408, 455, 664, 676 |
| BstMBI | GATC | 5 cut(s) | 369, 405, 452, 661, 673 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 167, 176, 617 |
| BstPI | GGTNACC | 1 cut(s) | 572 |
| BstV1I | GCAGC | 1 cut(s) | 191 |
| BstX2I | RGATCY | 1 cut(s) | 452 |
| BstYI | RGATCY | 1 cut(s) | 452 |
| BsuI | GTATCC | 2 cut(s) | 103, 520 |
| BsuRI | GGCC | 1 cut(s) | 95 |
| BtrI | CACGTC | 1 cut(s) | 136 |
| BtsCI | GGATG | 2 cut(s) | 210, 426 |
| Cac8I | GCNNGC | 1 cut(s) | 153 |
| CciI | TCATGA | 2 cut(s) | 70, 382 |
| CviAII | CATG | 2 cut(s) | 71, 383 |
| DdeI | CTNAG | 2 cut(s) | 184, 521 |
| DpnI | GATC | 5 cut(s) | 371, 407, 454, 663, 675 |
| DpnII | GATC | 5 cut(s) | 369, 405, 452, 661, 673 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 543 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 543 |
| EciI | GGCGGA | 1 cut(s) | 68 |
| Ecl136II | GAGCTC | 1 cut(s) | 590 |
| Eco130I | CCWWGG | 1 cut(s) | 456 |
| Eco24I | GRGCYC | 2 cut(s) | 499, 592 |
| Eco32I | GATATC | 1 cut(s) | 56 |
| Eco53kI | GAGCTC | 1 cut(s) | 590 |
| Eco57I | CTGAAG | 1 cut(s) | 177 |
| Eco88I | CYCGRG | 2 cut(s) | 49, 119 |
| Eco91I | GGTNACC | 1 cut(s) | 572 |
| EcoICRI | GAGCTC | 1 cut(s) | 590 |
| EcoO65I | GGTNACC | 1 cut(s) | 572 |
| EcoRV | GATATC | 1 cut(s) | 56 |
| EcoT14I | CCWWGG | 1 cut(s) | 456 |
| EcoT38I | GRGCYC | 2 cut(s) | 499, 592 |
| ErhI | CCWWGG | 1 cut(s) | 456 |
| FaeI | CATG | 2 cut(s) | 74, 386 |
| FatI | CATG | 2 cut(s) | 70, 382 |
| Fnu4HI | GCNGC | 1 cut(s) | 180 |
| FokI | GGATG | 2 cut(s) | 197, 413 |
| FriOI | GRGCYC | 2 cut(s) | 499, 592 |
| Fsp4HI | GCNGC | 1 cut(s) | 180 |
| FspBI | CTAG | 4 cut(s) | 126, 263, 543, 677 |
| GluI | GCNGC | 1 cut(s) | 180 |
| HaeIII | GGCC | 1 cut(s) | 95 |
| Hin1II | CATG | 2 cut(s) | 74, 386 |
| HindIII | AAGCTT | 1 cut(s) | 159 |
| HinfI | GANTC | 5 cut(s) | 102, 115, 220, 245, 479 |
| HphI | GGTGA | 1 cut(s) | 598 |
| Hpy188I | TCNGA | 1 cut(s) | 328 |
| HpyAV | CCTTC | 2 cut(s) | 360, 563 |
| HpyCH4IV | ACGT | 3 cut(s) | 135, 237, 538 |
| HpyCH4V | TGCA | 1 cut(s) | 339 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 167, 176, 617 |
| HpyF3I | CTNAG | 2 cut(s) | 184, 521 |
| HpySE526I | ACGT | 3 cut(s) | 135, 237, 538 |
| Hsp92II | CATG | 2 cut(s) | 74, 386 |
| Kzo9I | GATC | 5 cut(s) | 369, 405, 452, 661, 673 |
| LmnI | GCTCC | 1 cut(s) | 395 |
| LpnPI | CCDG | 7 cut(s) | 23, 30, 46, 263, 270, 461, 519 |
| Lsp1109I | GCAGC | 1 cut(s) | 191 |
| MaeI | CTAG | 4 cut(s) | 126, 263, 543, 677 |
| MaeII | ACGT | 3 cut(s) | 135, 237, 538 |
| MaeIII | GTNAC | 2 cut(s) | 572, 604 |
| MalI | GATC | 5 cut(s) | 371, 407, 454, 663, 675 |
| MboI | GATC | 5 cut(s) | 369, 405, 452, 661, 673 |
| MboII | GAAGA | 5 cut(s) | 415, 448, 608, 671, 680 |
| MflI | RGATCY | 1 cut(s) | 452 |
| MhlI | GDGCHC | 2 cut(s) | 499, 592 |
| MluCI | AATT | 7 cut(s) | 17, 356, 390, 445, 484, 553, 600 |
| MlyI | GAGTC | 2 cut(s) | 214, 239 |
| MnlI | CCTC | 2 cut(s) | 181, 293 |
| MseI | TTAA | 3 cut(s) | 6, 342, 350 |
| MslI | CAYNNNNRTG | 2 cut(s) | 215, 431 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 167, 176, 617 |
| NdeII | GATC | 5 cut(s) | 369, 405, 452, 661, 673 |
| NlaIII | CATG | 2 cut(s) | 74, 386 |
| NmuCI | GTSAC | 1 cut(s) | 604 |
| PaeR7I | CTCGAG | 1 cut(s) | 119 |
| PagI | TCATGA | 2 cut(s) | 70, 382 |
| PfeI | GAWTC | 3 cut(s) | 102, 115, 479 |
| PkrI | GCNGC | 1 cut(s) | 181 |
| PleI | GAGTC | 2 cut(s) | 214, 239 |
| PpsI | GAGTC | 2 cut(s) | 214, 239 |
| Psp124BI | GAGCTC | 1 cut(s) | 592 |
| PspEI | GGTNACC | 1 cut(s) | 572 |
| PsuI | RGATCY | 1 cut(s) | 452 |
| RseI | CAYNNNNRTG | 2 cut(s) | 215, 431 |
| SacI | GAGCTC | 1 cut(s) | 592 |
| SaqAI | TTAA | 3 cut(s) | 6, 342, 350 |
| SatI | GCNGC | 1 cut(s) | 180 |
| Sau3AI | GATC | 5 cut(s) | 369, 405, 452, 661, 673 |
| SchI | GAGTC | 2 cut(s) | 214, 239 |
| SduI | GDGCHC | 2 cut(s) | 499, 592 |
| Sfr274I | CTCGAG | 1 cut(s) | 119 |
| SlaI | CTCGAG | 1 cut(s) | 119 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 215, 431 |
| SmlI | CTYRAG | 2 cut(s) | 89, 119 |
| SmoI | CTYRAG | 2 cut(s) | 89, 119 |
| Sse9I | AATT | 7 cut(s) | 17, 356, 390, 445, 484, 553, 600 |
| SsiI | CCGC | 4 cut(s) | 79, 286, 577, 609 |
| SspMI | CTAG | 4 cut(s) | 126, 263, 543, 677 |
| SstI | GAGCTC | 1 cut(s) | 592 |
| StyI | CCWWGG | 1 cut(s) | 456 |
| TaiI | ACGT | 3 cut(s) | 138, 240, 541 |
| TaqI | TCGA | 3 cut(s) | 120, 449, 493 |
| TasI | AATT | 7 cut(s) | 17, 356, 390, 445, 484, 553, 600 |
| TfiI | GAWTC | 3 cut(s) | 102, 115, 479 |
| Tru1I | TTAA | 3 cut(s) | 6, 342, 350 |
| Tru9I | TTAA | 3 cut(s) | 6, 342, 350 |
| TseFI | GTSAC | 1 cut(s) | 604 |
| TseI | GCWGC | 1 cut(s) | 179 |
| Tsp45I | GTSAC | 1 cut(s) | 604 |
| TspDTI | ATGAA | 3 cut(s) | 59, 371, 416 |
| XbaI | TCTAGA | 1 cut(s) | 676 |
| XhoI | CTCGAG | 1 cut(s) | 119 |
| XspI | CTAG | 4 cut(s) | 126, 263, 543, 677 |