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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 826 |
| AccIII | TCCGGA | 2 cut(s) | 249, 1236 |
| AciI | CCGC | 4 cut(s) | 94, 164, 462, 746 |
| AclWI | GGATC | 3 cut(s) | 684, 696, 697 |
| AcoI | YGGCCR | 1 cut(s) | 224 |
| AfaI | GTAC | 3 cut(s) | 699, 841, 971 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 93, 222, 249, 274, 314, 523, 651, 1267 |
| AflII | CTTAAG | 1 cut(s) | 676 |
| AgsI | TTSAA | 6 cut(s) | 145, 175, 281, 584, 754, 963 |
| AjiI | CACGTC | 2 cut(s) | 498, 1077 |
| AjnI | CCWGG | 1 cut(s) | 187 |
| AluBI | AGCT | 7 cut(s) | 11, 611, 742, 766, 787, 1149, 1171 |
| AluI | AGCT | 7 cut(s) | 11, 611, 742, 766, 787, 1149, 1171 |
| Alw26I | GTCTC | 2 cut(s) | 1064, 1083 |
| AlwI | GGATC | 3 cut(s) | 684, 696, 697 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 424 |
| Ama87I | CYCGRG | 1 cut(s) | 880 |
| Aor13HI | TCCGGA | 2 cut(s) | 249, 1236 |
| AoxI | GGCC | 6 cut(s) | 224, 244, 385, 412, 432, 776 |
| ApeKI | GCWGC | 6 cut(s) | 19, 205, 304, 424, 470, 885 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 992 |
| AspA2I | CCTAGG | 1 cut(s) | 382 |
| AspLEI | GCGC | 3 cut(s) | 637, 828, 1274 |
| AspS9I | GGNCC | 3 cut(s) | 413, 433, 654 |
| AsuC2I | CCSGG | 1 cut(s) | 275 |
| AsuHPI | GGTGA | 1 cut(s) | 538 |
| AvaI | CYCGRG | 1 cut(s) | 880 |
| AvaII | GGWCC | 1 cut(s) | 654 |
| AvrII | CCTAGG | 1 cut(s) | 382 |
| AxyI | CCTNAGG | 2 cut(s) | 409, 1262 |
| BamHI | GGATCC | 1 cut(s) | 689 |
| BanII | GRGCYC | 2 cut(s) | 364, 1260 |
| BbsI | GAAGAC | 1 cut(s) | 860 |
| BbvI | GCAGC | 6 cut(s) | 6, 217, 291, 411, 482, 897 |
| BccI | CCATC | 4 cut(s) | 121, 679, 929, 1005 |
| BciT130I | CCWGG | 1 cut(s) | 189 |
| BciVI | GTATCC | 1 cut(s) | 634 |
| BcnI | CCSGG | 1 cut(s) | 275 |
| BcoDI | GTCTC | 2 cut(s) | 1064, 1083 |
| BfaI | CTAG | 7 cut(s) | 8, 383, 389, 430, 622, 1211, 1275 |
| BfoI | RGCGCY | 1 cut(s) | 1275 |
| BfrI | CTTAAG | 1 cut(s) | 676 |
| BfuI | GTATCC | 1 cut(s) | 634 |
| BglII | AGATCT | 1 cut(s) | 177 |
| BisI | GCNGC | 7 cut(s) | 20, 164, 206, 305, 425, 471, 886 |
| BlnI | CCTAGG | 1 cut(s) | 382 |
| BlsI | GCNGC | 7 cut(s) | 21, 165, 207, 306, 426, 472, 887 |
| Bme1390I | CCNGG | 2 cut(s) | 189, 275 |
| Bme18I | GGWCC | 1 cut(s) | 654 |
| BmeT110I | CYCGRG | 1 cut(s) | 880 |
| BmgBI | CACGTC | 2 cut(s) | 498, 1077 |
| BmgT120I | GGNCC | 3 cut(s) | 413, 433, 654 |
| BmiI | GGNNCC | 4 cut(s) | 85, 655, 691, 1158 |
| BmrFI | CCNGG | 2 cut(s) | 189, 275 |
| BmsI | GCATC | 3 cut(s) | 473, 493, 681 |
| BpiI | GAAGAC | 1 cut(s) | 860 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 600, 632 |
| BpmI | CTGGAG | 2 cut(s) | 171, 460 |
| BpuMI | CCSGG | 1 cut(s) | 275 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1048 |
| BsaJI | CCNNGG | 2 cut(s) | 382, 1217 |
| BsaWI | WCCGGW | 3 cut(s) | 249, 523, 1236 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 93, 222, 249, 274, 314, 523, 651, 1267 |
| Bse118I | RCCGGY | 5 cut(s) | 201, 222, 242, 314, 508 |
| Bse1I | ACTGG | 2 cut(s) | 477, 547 |
| Bse21I | CCTNAGG | 2 cut(s) | 409, 1262 |
| Bse3DI | GCAATG | 3 cut(s) | 14, 503, 903 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1048 |
| BseAI | TCCGGA | 2 cut(s) | 249, 1236 |
| BseBI | CCWGG | 1 cut(s) | 189 |
| BseDI | CCNNGG | 2 cut(s) | 382, 1217 |
| BseGI | GGATG | 2 cut(s) | 102, 593 |
| BseJI | GATNNNNATC | 1 cut(s) | 1048 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 93, 222, 249, 274, 314, 523, 651, 1267 |
| BseMI | GCAATG | 3 cut(s) | 14, 503, 903 |
| BseMII | CTCAG | 2 cut(s) | 423, 685 |
| BseNI | ACTGG | 2 cut(s) | 477, 547 |
| BseRI | GAGGAG | 1 cut(s) | 722 |
| BseX3I | CGGCCG | 1 cut(s) | 224 |
| BseXI | GCAGC | 6 cut(s) | 6, 217, 291, 411, 482, 897 |
| BseYI | CCCAGC | 2 cut(s) | 363, 368 |
| Bsh1236I | CGCG | 1 cut(s) | 826 |
| Bsh1285I | CGRYCG | 1 cut(s) | 227 |
| BshFI | GGCC | 6 cut(s) | 226, 246, 387, 414, 434, 778 |
| BsiEI | CGRYCG | 1 cut(s) | 227 |
| BsiHKCI | CYCGRG | 1 cut(s) | 880 |
| BslFI | GGGAC | 1 cut(s) | 250 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 93, 222, 249, 274, 314, 523, 651, 1267 |
| BsmAI | GTCTC | 2 cut(s) | 1064, 1083 |
| BsmBI | CGTCTC | 1 cut(s) | 1083 |
| BsmFI | GGGAC | 1 cut(s) | 250 |
| BsnI | GGCC | 6 cut(s) | 226, 246, 387, 414, 434, 778 |
| BsoBI | CYCGRG | 1 cut(s) | 880 |
| Bsp1286I | GDGCHC | 2 cut(s) | 364, 1260 |
| Bsp13I | TCCGGA | 2 cut(s) | 249, 1236 |
| Bsp143I | GATC | 6 cut(s) | 99, 177, 374, 689, 701, 1049 |
| BspACI | CCGC | 4 cut(s) | 94, 164, 462, 746 |
| BspANI | GGCC | 6 cut(s) | 226, 246, 387, 414, 434, 778 |
| BspCNI | CTCAG | 2 cut(s) | 422, 686 |
| BspEI | TCCGGA | 2 cut(s) | 249, 1236 |
| BspFNI | CGCG | 1 cut(s) | 826 |
| BspHI | TCATGA | 3 cut(s) | 29, 803, 1143 |
| BspLI | GGNNCC | 4 cut(s) | 85, 655, 691, 1158 |
| BspPI | GGATC | 3 cut(s) | 684, 696, 697 |
| BspTI | CTTAAG | 1 cut(s) | 676 |
| BsrDI | GCAATG | 3 cut(s) | 14, 503, 903 |
| BsrFI | RCCGGY | 5 cut(s) | 201, 222, 242, 314, 508 |
| BsrI | ACTGG | 2 cut(s) | 477, 547 |
| BssAI | RCCGGY | 5 cut(s) | 201, 222, 242, 314, 508 |
| BssECI | CCNNGG | 2 cut(s) | 382, 1217 |
| BssMI | GATC | 6 cut(s) | 99, 177, 374, 689, 701, 1049 |
| BssT1I | CCWWGG | 1 cut(s) | 382 |
| Bst2UI | CCWGG | 1 cut(s) | 189 |
| Bst4CI | ACNGT | 2 cut(s) | 36, 420 |
| BstAFI | CTTAAG | 1 cut(s) | 676 |
| BstC8I | GCNNGC | 3 cut(s) | 60, 492, 670 |
| BstDEI | CTNAG | 3 cut(s) | 409, 694, 1262 |
| BstDSI | CCRYGG | 1 cut(s) | 1217 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1265 |
| BstF5I | GGATG | 2 cut(s) | 102, 593 |
| BstFNI | CGCG | 1 cut(s) | 826 |
| BstH2I | RGCGCY | 1 cut(s) | 1275 |
| BstHHI | GCGC | 3 cut(s) | 637, 828, 1274 |
| BstKTI | GATC | 6 cut(s) | 102, 180, 377, 692, 704, 1052 |
| BstMAI | GTCTC | 2 cut(s) | 1064, 1083 |
| BstMBI | GATC | 6 cut(s) | 99, 177, 374, 689, 701, 1049 |
| BstMCI | CGRYCG | 1 cut(s) | 227 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 470, 500, 754, 763, 784 |
| BstNI | CCWGG | 1 cut(s) | 189 |
| BstSCI | CCNGG | 2 cut(s) | 187, 273 |
| BstUI | CGCG | 1 cut(s) | 826 |
| BstV1I | GCAGC | 6 cut(s) | 6, 217, 291, 411, 482, 897 |
| BstV2I | GAAGAC | 1 cut(s) | 860 |
| BstX2I | RGATCY | 2 cut(s) | 177, 689 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 54 |
| BstYI | RGATCY | 2 cut(s) | 177, 689 |
| BstZI | CGGCCG | 1 cut(s) | 224 |
| Bsu36I | CCTNAGG | 2 cut(s) | 409, 1262 |
| BsuI | GTATCC | 1 cut(s) | 634 |
| BsuRI | GGCC | 6 cut(s) | 226, 246, 387, 414, 434, 778 |
| BtgI | CCRYGG | 1 cut(s) | 1217 |
| BtrI | CACGTC | 2 cut(s) | 498, 1077 |
| BtsCI | GGATG | 2 cut(s) | 102, 593 |
| BtsI | GCAGTG | 1 cut(s) | 158 |
| BtsIMutI | CAGTG | 2 cut(s) | 158, 1034 |
| Cac8I | GCNNGC | 3 cut(s) | 60, 492, 670 |
| CaiI | CAGNNNCTG | 1 cut(s) | 424 |
| CciI | TCATGA | 3 cut(s) | 29, 803, 1143 |
| CfoI | GCGC | 3 cut(s) | 637, 828, 1274 |
| Cfr10I | RCCGGY | 5 cut(s) | 201, 222, 242, 314, 508 |
| Cfr13I | GGNCC | 3 cut(s) | 413, 433, 654 |
| CseI | GACGC | 1 cut(s) | 832 |
| Csp6I | GTAC | 3 cut(s) | 698, 840, 970 |
| CviAII | CATG | 6 cut(s) | 30, 79, 804, 816, 1144, 1161 |
| CviQI | GTAC | 3 cut(s) | 698, 840, 970 |
| DdeI | CTNAG | 3 cut(s) | 409, 694, 1262 |
| DpnI | GATC | 6 cut(s) | 101, 179, 376, 691, 703, 1051 |
| DpnII | GATC | 6 cut(s) | 99, 177, 374, 689, 701, 1049 |
| EaeI | YGGCCR | 1 cut(s) | 224 |
| EagI | CGGCCG | 1 cut(s) | 224 |
| EclXI | CGGCCG | 1 cut(s) | 224 |
| Eco130I | CCWWGG | 1 cut(s) | 382 |
| Eco147I | AGGCCT | 1 cut(s) | 387 |
| Eco24I | GRGCYC | 2 cut(s) | 364, 1260 |
| Eco47I | GGWCC | 1 cut(s) | 654 |
| Eco52I | CGGCCG | 1 cut(s) | 224 |
| Eco81I | CCTNAGG | 2 cut(s) | 409, 1262 |
| Eco88I | CYCGRG | 1 cut(s) | 880 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1265 |
| EcoRII | CCWGG | 1 cut(s) | 187 |
| EcoT14I | CCWWGG | 1 cut(s) | 382 |
| EcoT38I | GRGCYC | 2 cut(s) | 364, 1260 |
| ErhI | CCWWGG | 1 cut(s) | 382 |
| Esp3I | CGTCTC | 1 cut(s) | 1083 |
| FaeI | CATG | 6 cut(s) | 33, 82, 807, 819, 1147, 1164 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 274, 306, 595, 627 |
| FaqI | GGGAC | 1 cut(s) | 250 |
| FatI | CATG | 6 cut(s) | 29, 78, 803, 815, 1143, 1160 |
| Fnu4HI | GCNGC | 7 cut(s) | 20, 164, 206, 305, 425, 471, 886 |
| FokI | GGATG | 2 cut(s) | 109, 600 |
| FriOI | GRGCYC | 2 cut(s) | 364, 1260 |
| Fsp4HI | GCNGC | 7 cut(s) | 20, 164, 206, 305, 425, 471, 886 |
| FspBI | CTAG | 7 cut(s) | 8, 383, 389, 430, 622, 1211, 1275 |
| GlaI | GCGC | 3 cut(s) | 636, 827, 1273 |
| GluI | GCNGC | 7 cut(s) | 20, 164, 206, 305, 425, 471, 886 |
| GsaI | CCCAGC | 2 cut(s) | 367, 372 |
| GsuI | CTGGAG | 2 cut(s) | 171, 460 |
| HaeII | RGCGCY | 1 cut(s) | 1275 |
| HaeIII | GGCC | 6 cut(s) | 226, 246, 387, 414, 434, 778 |
| HgaI | GACGC | 1 cut(s) | 832 |
| HhaI | GCGC | 3 cut(s) | 637, 828, 1274 |
| Hin1II | CATG | 6 cut(s) | 33, 82, 807, 819, 1147, 1164 |
| Hin6I | GCGC | 3 cut(s) | 635, 826, 1272 |
| HinP1I | GCGC | 3 cut(s) | 635, 826, 1272 |
| HincII | GTYRAC | 1 cut(s) | 514 |
| HindII | GTYRAC | 1 cut(s) | 514 |
| HinfI | GANTC | 3 cut(s) | 192, 907, 1240 |
| HphI | GGTGA | 1 cut(s) | 538 |
| Hpy166II | GTNNAC | 1 cut(s) | 514 |
| Hpy188I | TCNGA | 4 cut(s) | 573, 719, 987, 1109 |
| Hpy8I | GTNNAC | 1 cut(s) | 514 |
| HpyAV | CCTTC | 4 cut(s) | 151, 296, 300, 1080 |
| HpyCH4III | ACNGT | 2 cut(s) | 36, 420 |
| HpyCH4IV | ACGT | 5 cut(s) | 497, 722, 1076, 1128, 1166 |
| HpyCH4V | TGCA | 1 cut(s) | 1084 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 470, 500, 754, 763, 784 |
| HpyF3I | CTNAG | 3 cut(s) | 409, 694, 1262 |
| HpySE526I | ACGT | 5 cut(s) | 497, 722, 1076, 1128, 1166 |
| Hsp92II | CATG | 6 cut(s) | 33, 82, 807, 819, 1147, 1164 |
| HspAI | GCGC | 3 cut(s) | 635, 826, 1272 |
| Kpn2I | TCCGGA | 2 cut(s) | 249, 1236 |
| Kzo9I | GATC | 6 cut(s) | 99, 177, 374, 689, 701, 1049 |
| LmnI | GCTCC | 3 cut(s) | 16, 621, 833 |
| Lsp1109I | GCAGC | 6 cut(s) | 6, 217, 291, 411, 482, 897 |
| LweI | GCATC | 3 cut(s) | 473, 493, 681 |
| MaeI | CTAG | 7 cut(s) | 8, 383, 389, 430, 622, 1211, 1275 |
| MaeII | ACGT | 5 cut(s) | 497, 722, 1076, 1128, 1166 |
| MaeIII | GTNAC | 5 cut(s) | 255, 526, 549, 592, 904 |
| MalI | GATC | 6 cut(s) | 101, 179, 376, 691, 703, 1051 |
| MboI | GATC | 6 cut(s) | 99, 177, 374, 689, 701, 1049 |
| MboII | GAAGA | 3 cut(s) | 187, 865, 1209 |
| MflI | RGATCY | 2 cut(s) | 177, 689 |
| MhlI | GDGCHC | 2 cut(s) | 364, 1260 |
| MluCI | AATT | 4 cut(s) | 576, 981, 1232, 1245 |
| MlyI | GAGTC | 2 cut(s) | 901, 1249 |
| MmeI | TCCRAC | 1 cut(s) | 596 |
| MroI | TCCGGA | 2 cut(s) | 249, 1236 |
| MroXI | GAANNNNTTC | 1 cut(s) | 992 |
| MseI | TTAA | 2 cut(s) | 677, 845 |
| MslI | CAYNNNNRTG | 2 cut(s) | 818, 1192 |
| MspCI | CTTAAG | 1 cut(s) | 676 |
| MspR9I | CCNGG | 2 cut(s) | 189, 275 |
| MvaI | CCWGG | 1 cut(s) | 189 |
| MvnI | CGCG | 1 cut(s) | 826 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 470, 500, 754, 763, 784 |
| NciI | CCSGG | 1 cut(s) | 275 |
| NdeII | GATC | 6 cut(s) | 99, 177, 374, 689, 701, 1049 |
| NlaIII | CATG | 6 cut(s) | 33, 82, 807, 819, 1147, 1164 |
| NlaIV | GGNNCC | 4 cut(s) | 85, 655, 691, 1158 |
| NmuCI | GTSAC | 3 cut(s) | 526, 549, 904 |
| PaeR7I | CTCGAG | 1 cut(s) | 880 |
| PagI | TCATGA | 3 cut(s) | 29, 803, 1143 |
| PceI | AGGCCT | 1 cut(s) | 387 |
| PdmI | GAANNNNTTC | 1 cut(s) | 992 |
| PfeI | GAWTC | 1 cut(s) | 192 |
| PfoI | TCCNGGA | 1 cut(s) | 187 |
| PkrI | GCNGC | 7 cut(s) | 21, 165, 207, 306, 426, 472, 887 |
| PleI | GAGTC | 2 cut(s) | 901, 1248 |
| PpsI | GAGTC | 2 cut(s) | 901, 1248 |
| Psp6I | CCWGG | 1 cut(s) | 187 |
| PspFI | CCCAGC | 2 cut(s) | 363, 368 |
| PspGI | CCWGG | 1 cut(s) | 187 |
| PspN4I | GGNNCC | 4 cut(s) | 85, 655, 691, 1158 |
| PspPI | GGNCC | 3 cut(s) | 413, 433, 654 |
| PspXI | VCTCGAGB | 1 cut(s) | 880 |
| PstNI | CAGNNNCTG | 1 cut(s) | 424 |
| PsuI | RGATCY | 2 cut(s) | 177, 689 |
| RsaI | GTAC | 3 cut(s) | 699, 841, 971 |
| RsaNI | GTAC | 3 cut(s) | 698, 840, 970 |
| RseI | CAYNNNNRTG | 2 cut(s) | 818, 1192 |
| SaqAI | TTAA | 2 cut(s) | 677, 845 |
| SatI | GCNGC | 7 cut(s) | 20, 164, 206, 305, 425, 471, 886 |
| Sau3AI | GATC | 6 cut(s) | 99, 177, 374, 689, 701, 1049 |
| Sau96I | GGNCC | 3 cut(s) | 413, 433, 654 |
| SchI | GAGTC | 2 cut(s) | 901, 1249 |
| ScrFI | CCNGG | 2 cut(s) | 189, 275 |
| SduI | GDGCHC | 2 cut(s) | 364, 1260 |
| SfaNI | GCATC | 3 cut(s) | 473, 493, 681 |
| Sfr274I | CTCGAG | 1 cut(s) | 880 |
| SinI | GGWCC | 1 cut(s) | 654 |
| SlaI | CTCGAG | 1 cut(s) | 880 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 818, 1192 |
| SmlI | CTYRAG | 2 cut(s) | 676, 880 |
| SmoI | CTYRAG | 2 cut(s) | 676, 880 |
| Sse9I | AATT | 4 cut(s) | 576, 981, 1232, 1245 |
| SseBI | AGGCCT | 1 cut(s) | 387 |
| SsiI | CCGC | 4 cut(s) | 94, 164, 462, 746 |
| SspMI | CTAG | 7 cut(s) | 8, 383, 389, 430, 622, 1211, 1275 |
| StuI | AGGCCT | 1 cut(s) | 387 |
| StyD4I | CCNGG | 2 cut(s) | 187, 273 |
| StyI | CCWWGG | 1 cut(s) | 382 |
| TaaI | ACNGT | 2 cut(s) | 36, 420 |
| TaiI | ACGT | 5 cut(s) | 500, 725, 1079, 1131, 1169 |
| TaqI | TCGA | 4 cut(s) | 540, 881, 1052, 1254 |
| TasI | AATT | 4 cut(s) | 576, 981, 1232, 1245 |
| TatI | WGTACW | 1 cut(s) | 969 |
| TauI | GCSGC | 1 cut(s) | 166 |
| TfiI | GAWTC | 1 cut(s) | 192 |
| Tru1I | TTAA | 2 cut(s) | 677, 845 |
| Tru9I | TTAA | 2 cut(s) | 677, 845 |
| TscAI | CASTG | 2 cut(s) | 165, 1041 |
| TseFI | GTSAC | 3 cut(s) | 526, 549, 904 |
| TseI | GCWGC | 6 cut(s) | 19, 205, 304, 424, 470, 885 |
| Tsp45I | GTSAC | 3 cut(s) | 526, 549, 904 |
| TspDTI | ATGAA | 4 cut(s) | 797, 832, 1132, 1177 |
| TspGWI | ACGGA | 1 cut(s) | 646 |
| TspRI | CASTG | 2 cut(s) | 165, 1041 |
| Vha464I | CTTAAG | 1 cut(s) | 676 |
| VpaK11BI | GGWCC | 1 cut(s) | 654 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1265 |
| XbaI | TCTAGA | 1 cut(s) | 1210 |
| XhoI | CTCGAG | 1 cut(s) | 880 |
| XmaJI | CCTAGG | 1 cut(s) | 382 |
| XmnI | GAANNNNTTC | 1 cut(s) | 992 |
| XspI | CTAG | 7 cut(s) | 8, 383, 389, 430, 622, 1211, 1275 |