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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 82 |
| AciI | CCGC | 1 cut(s) | 472 |
| AclWI | GGATC | 4 cut(s) | 61, 74, 109, 110 |
| AfaI | GTAC | 1 cut(s) | 254 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 262, 571 |
| AflII | CTTAAG | 1 cut(s) | 89 |
| AgsI | TTSAA | 2 cut(s) | 167, 718 |
| AluBI | AGCT | 6 cut(s) | 24, 155, 179, 200, 280, 606 |
| AluI | AGCT | 6 cut(s) | 24, 155, 179, 200, 280, 606 |
| Alw26I | GTCTC | 2 cut(s) | 32, 754 |
| AlwI | GGATC | 4 cut(s) | 61, 74, 109, 110 |
| Ama87I | CYCGRG | 1 cut(s) | 350 |
| AoxI | GGCC | 1 cut(s) | 644 |
| ApaI | GGGCCC | 1 cut(s) | 648 |
| ApeKI | GCWGC | 2 cut(s) | 298, 606 |
| AspS9I | GGNCC | 5 cut(s) | 346, 562, 616, 644, 645 |
| AsuC2I | CCSGG | 1 cut(s) | 672 |
| AsuHPI | GGTGA | 3 cut(s) | 400, 428, 787 |
| AvaI | CYCGRG | 1 cut(s) | 350 |
| AvaII | GGWCC | 3 cut(s) | 346, 562, 616 |
| BaeGI | GKGCMC | 1 cut(s) | 648 |
| BamHI | GGATCC | 1 cut(s) | 66 |
| BanII | GRGCYC | 1 cut(s) | 648 |
| BbvI | GCAGC | 2 cut(s) | 310, 593 |
| BccI | CCATC | 3 cut(s) | 505, 619, 782 |
| BclI | TGATCA | 1 cut(s) | 736 |
| BcnI | CCSGG | 1 cut(s) | 672 |
| BcoDI | GTCTC | 2 cut(s) | 32, 754 |
| BfaI | CTAG | 2 cut(s) | 35, 273 |
| BfrI | CTTAAG | 1 cut(s) | 89 |
| BisI | GCNGC | 2 cut(s) | 299, 607 |
| BlsI | GCNGC | 2 cut(s) | 300, 608 |
| Bme1390I | CCNGG | 1 cut(s) | 672 |
| Bme18I | GGWCC | 3 cut(s) | 346, 562, 616 |
| BmeT110I | CYCGRG | 1 cut(s) | 350 |
| BmgT120I | GGNCC | 5 cut(s) | 346, 562, 616, 644, 645 |
| BmiI | GGNNCC | 4 cut(s) | 68, 348, 563, 646 |
| BmrFI | CCNGG | 1 cut(s) | 672 |
| BmsI | GCATC | 1 cut(s) | 512 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 13, 45 |
| BpuEI | CTTGAG | 1 cut(s) | 278 |
| BpuMI | CCSGG | 1 cut(s) | 672 |
| BsaJI | CCNNGG | 1 cut(s) | 351 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 369, 399, 566, 596 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 262, 571 |
| Bse1I | ACTGG | 1 cut(s) | 348 |
| Bse3DI | GCAATG | 1 cut(s) | 316 |
| BseDI | CCNNGG | 1 cut(s) | 351 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 262, 571 |
| BseMI | GCAATG | 1 cut(s) | 316 |
| BseMII | CTCAG | 1 cut(s) | 690 |
| BseNI | ACTGG | 1 cut(s) | 348 |
| BseRI | GAGGAG | 3 cut(s) | 135, 393, 464 |
| BseSI | GKGCMC | 1 cut(s) | 648 |
| BseXI | GCAGC | 2 cut(s) | 310, 593 |
| BshFI | GGCC | 1 cut(s) | 646 |
| BsiHKCI | CYCGRG | 1 cut(s) | 350 |
| BsiSI | CCGG | 1 cut(s) | 672 |
| BslFI | GGGAC | 1 cut(s) | 575 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 262, 571 |
| BsmAI | GTCTC | 2 cut(s) | 32, 754 |
| BsmFI | GGGAC | 1 cut(s) | 575 |
| BsnI | GGCC | 1 cut(s) | 646 |
| BsoBI | CYCGRG | 1 cut(s) | 350 |
| Bsp120I | GGGCCC | 1 cut(s) | 644 |
| Bsp1286I | GDGCHC | 1 cut(s) | 648 |
| Bsp143I | GATC | 4 cut(s) | 66, 102, 114, 736 |
| BspACI | CCGC | 1 cut(s) | 472 |
| BspANI | GGCC | 1 cut(s) | 646 |
| BspCNI | CTCAG | 1 cut(s) | 689 |
| BspHI | TCATGA | 2 cut(s) | 216, 860 |
| BspLI | GGNNCC | 4 cut(s) | 68, 348, 563, 646 |
| BspPI | GGATC | 4 cut(s) | 61, 74, 109, 110 |
| BspTI | CTTAAG | 1 cut(s) | 89 |
| BsrDI | GCAATG | 1 cut(s) | 316 |
| BsrI | ACTGG | 1 cut(s) | 348 |
| BssECI | CCNNGG | 1 cut(s) | 351 |
| BssMI | GATC | 4 cut(s) | 66, 102, 114, 736 |
| Bst4CI | ACNGT | 1 cut(s) | 850 |
| Bst6I | CTCTTC | 1 cut(s) | 489 |
| BstAFI | CTTAAG | 1 cut(s) | 89 |
| BstDEI | CTNAG | 2 cut(s) | 106, 676 |
| BstEII | GGTNACC | 1 cut(s) | 406 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 260 |
| BstKTI | GATC | 4 cut(s) | 69, 105, 117, 739 |
| BstMAI | GTCTC | 2 cut(s) | 32, 754 |
| BstMBI | GATC | 4 cut(s) | 66, 102, 114, 736 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 167, 176, 197, 603, 643 |
| BstPI | GGTNACC | 1 cut(s) | 406 |
| BstSCI | CCNGG | 1 cut(s) | 670 |
| BstSLI | GKGCMC | 1 cut(s) | 648 |
| BstV1I | GCAGC | 2 cut(s) | 310, 593 |
| BstX2I | RGATCY | 2 cut(s) | 66, 102 |
| BstYI | RGATCY | 2 cut(s) | 66, 102 |
| BsuRI | GGCC | 1 cut(s) | 646 |
| CciI | TCATGA | 2 cut(s) | 216, 860 |
| Cfr13I | GGNCC | 5 cut(s) | 346, 562, 616, 644, 645 |
| CseI | GACGC | 1 cut(s) | 68 |
| Csp6I | GTAC | 1 cut(s) | 253 |
| CviAII | CATG | 3 cut(s) | 217, 229, 861 |
| CviQI | GTAC | 1 cut(s) | 253 |
| DdeI | CTNAG | 2 cut(s) | 106, 676 |
| DpnI | GATC | 4 cut(s) | 68, 104, 116, 738 |
| DpnII | GATC | 4 cut(s) | 66, 102, 114, 736 |
| Eam1104I | CTCTTC | 1 cut(s) | 489 |
| EarI | CTCTTC | 1 cut(s) | 489 |
| Eco24I | GRGCYC | 1 cut(s) | 648 |
| Eco47I | GGWCC | 3 cut(s) | 346, 562, 616 |
| Eco88I | CYCGRG | 1 cut(s) | 350 |
| Eco91I | GGTNACC | 1 cut(s) | 406 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 260 |
| EcoO109I | RGGNCCY | 1 cut(s) | 562 |
| EcoO65I | GGTNACC | 1 cut(s) | 406 |
| EcoT38I | GRGCYC | 1 cut(s) | 648 |
| FaeI | CATG | 3 cut(s) | 220, 232, 864 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 8, 40 |
| FaqI | GGGAC | 1 cut(s) | 575 |
| FatI | CATG | 3 cut(s) | 216, 228, 860 |
| FbaI | TGATCA | 1 cut(s) | 736 |
| FblI | GTMKAC | 1 cut(s) | 82 |
| Fnu4HI | GCNGC | 2 cut(s) | 299, 607 |
| FriOI | GRGCYC | 1 cut(s) | 648 |
| Fsp4HI | GCNGC | 2 cut(s) | 299, 607 |
| FspBI | CTAG | 2 cut(s) | 35, 273 |
| GluI | GCNGC | 2 cut(s) | 299, 607 |
| HaeIII | GGCC | 1 cut(s) | 646 |
| HapII | CCGG | 1 cut(s) | 672 |
| HgaI | GACGC | 1 cut(s) | 68 |
| Hin1II | CATG | 3 cut(s) | 220, 232, 864 |
| HincII | GTYRAC | 1 cut(s) | 83 |
| HindII | GTYRAC | 1 cut(s) | 83 |
| HinfI | GANTC | 7 cut(s) | 320, 437, 515, 556, 569, 577, 588 |
| HpaII | CCGG | 1 cut(s) | 672 |
| HphI | GGTGA | 3 cut(s) | 400, 428, 787 |
| Hpy166II | GTNNAC | 1 cut(s) | 83 |
| Hpy188I | TCNGA | 7 cut(s) | 12, 119, 508, 520, 574, 616, 741 |
| Hpy188III | TCNNGA | 8 cut(s) | 217, 244, 317, 332, 444, 560, 718, 861 |
| Hpy8I | GTNNAC | 1 cut(s) | 83 |
| Hpy99I | CGWCG | 3 cut(s) | 84, 445, 644 |
| HpyAV | CCTTC | 3 cut(s) | 407, 673, 724 |
| HpyCH4III | ACNGT | 1 cut(s) | 850 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 167, 176, 197, 603, 643 |
| HpyF3I | CTNAG | 2 cut(s) | 106, 676 |
| Hsp92II | CATG | 3 cut(s) | 220, 232, 864 |
| Ksp22I | TGATCA | 1 cut(s) | 736 |
| Kzo9I | GATC | 4 cut(s) | 66, 102, 114, 736 |
| LmnI | GCTCC | 3 cut(s) | 34, 246, 500 |
| LpnPI | CCDG | 4 cut(s) | 329, 616, 647, 685 |
| Lsp1109I | GCAGC | 2 cut(s) | 310, 593 |
| LweI | GCATC | 1 cut(s) | 512 |
| MaeI | CTAG | 2 cut(s) | 35, 273 |
| MaeIII | GTNAC | 3 cut(s) | 317, 406, 838 |
| MalI | GATC | 4 cut(s) | 68, 104, 116, 738 |
| MboI | GATC | 4 cut(s) | 66, 102, 114, 736 |
| MboII | GAAGA | 5 cut(s) | 410, 506, 740, 764, 790 |
| MflI | RGATCY | 2 cut(s) | 66, 102 |
| MhlI | GDGCHC | 1 cut(s) | 648 |
| MluCI | AATT | 4 cut(s) | 210, 356, 820, 843 |
| MlyI | GAGTC | 4 cut(s) | 314, 446, 582, 586 |
| MmeI | TCCRAC | 1 cut(s) | 709 |
| MseI | TTAA | 2 cut(s) | 90, 533 |
| MslI | CAYNNNNRTG | 2 cut(s) | 231, 624 |
| MspA1I | CMGCKG | 1 cut(s) | 606 |
| MspCI | CTTAAG | 1 cut(s) | 89 |
| MspI | CCGG | 1 cut(s) | 672 |
| MspR9I | CCNGG | 1 cut(s) | 672 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 167, 176, 197, 603, 643 |
| NciI | CCSGG | 1 cut(s) | 672 |
| NdeII | GATC | 4 cut(s) | 66, 102, 114, 736 |
| NlaIII | CATG | 3 cut(s) | 220, 232, 864 |
| NlaIV | GGNNCC | 4 cut(s) | 68, 348, 563, 646 |
| NmuCI | GTSAC | 3 cut(s) | 317, 406, 838 |
| PagI | TCATGA | 2 cut(s) | 216, 860 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 188, 428 |
| PfeI | GAWTC | 3 cut(s) | 515, 556, 569 |
| PkrI | GCNGC | 2 cut(s) | 300, 608 |
| PleI | GAGTC | 4 cut(s) | 314, 445, 582, 585 |
| PpsI | GAGTC | 4 cut(s) | 314, 445, 582, 585 |
| PpuMI | RGGWCCY | 1 cut(s) | 562 |
| Psp5II | RGGWCCY | 1 cut(s) | 562 |
| PspEI | GGTNACC | 1 cut(s) | 406 |
| PspN4I | GGNNCC | 4 cut(s) | 68, 348, 563, 646 |
| PspOMI | GGGCCC | 1 cut(s) | 644 |
| PspPI | GGNCC | 5 cut(s) | 346, 562, 616, 644, 645 |
| PspPPI | RGGWCCY | 1 cut(s) | 562 |
| PsuI | RGATCY | 2 cut(s) | 66, 102 |
| PvuII | CAGCTG | 1 cut(s) | 606 |
| RsaI | GTAC | 1 cut(s) | 254 |
| RsaNI | GTAC | 1 cut(s) | 253 |
| RseI | CAYNNNNRTG | 2 cut(s) | 231, 624 |
| SalI | GTCGAC | 1 cut(s) | 81 |
| SaqAI | TTAA | 2 cut(s) | 90, 533 |
| SatI | GCNGC | 2 cut(s) | 299, 607 |
| Sau3AI | GATC | 4 cut(s) | 66, 102, 114, 736 |
| Sau96I | GGNCC | 5 cut(s) | 346, 562, 616, 644, 645 |
| SchI | GAGTC | 4 cut(s) | 314, 446, 582, 586 |
| ScrFI | CCNGG | 1 cut(s) | 672 |
| SduI | GDGCHC | 1 cut(s) | 648 |
| SfaNI | GCATC | 1 cut(s) | 512 |
| SinI | GGWCC | 3 cut(s) | 346, 562, 616 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 231, 624 |
| SmlI | CTYRAG | 2 cut(s) | 89, 293 |
| SmoI | CTYRAG | 2 cut(s) | 89, 293 |
| Sse9I | AATT | 4 cut(s) | 210, 356, 820, 843 |
| SsiI | CCGC | 1 cut(s) | 472 |
| SspMI | CTAG | 2 cut(s) | 35, 273 |
| StyD4I | CCNGG | 1 cut(s) | 670 |
| TaaI | ACNGT | 1 cut(s) | 850 |
| TaqI | TCGA | 2 cut(s) | 82, 387 |
| TasI | AATT | 4 cut(s) | 210, 356, 820, 843 |
| TfiI | GAWTC | 3 cut(s) | 515, 556, 569 |
| Tru1I | TTAA | 2 cut(s) | 90, 533 |
| Tru9I | TTAA | 2 cut(s) | 90, 533 |
| TseFI | GTSAC | 3 cut(s) | 317, 406, 838 |
| TseI | GCWGC | 2 cut(s) | 298, 606 |
| Tsp45I | GTSAC | 3 cut(s) | 317, 406, 838 |
| TspDTI | ATGAA | 2 cut(s) | 210, 245 |
| TspGWI | ACGGA | 1 cut(s) | 59 |
| Vha464I | CTTAAG | 1 cut(s) | 89 |
| VpaK11BI | GGWCC | 3 cut(s) | 346, 562, 616 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 260 |
| XmiI | GTMKAC | 1 cut(s) | 82 |
| XspI | CTAG | 2 cut(s) | 35, 273 |