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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 639 |
| AccB1I | GGYRCC | 1 cut(s) | 755 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 855 |
| AciI | CCGC | 1 cut(s) | 69 |
| AclI | AACGTT | 1 cut(s) | 222 |
| AclWI | GGATC | 1 cut(s) | 20 |
| AcoI | YGGCCR | 1 cut(s) | 769 |
| AfaI | GTAC | 2 cut(s) | 164, 899 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 590, 661, 855 |
| AflIII | ACRYGT | 2 cut(s) | 709, 894 |
| AgsI | TTSAA | 2 cut(s) | 286, 985 |
| AleI | CACNNNNGTG | 1 cut(s) | 276 |
| AluBI | AGCT | 7 cut(s) | 65, 89, 110, 151, 190, 472, 494 |
| AluI | AGCT | 7 cut(s) | 65, 89, 110, 151, 190, 472, 494 |
| Alw21I | GWGCWC | 2 cut(s) | 153, 691 |
| Alw26I | GTCTC | 1 cut(s) | 989 |
| Alw44I | GTGCAC | 1 cut(s) | 687 |
| AlwI | GGATC | 1 cut(s) | 20 |
| Ama87I | CYCGRG | 1 cut(s) | 203 |
| AoxI | GGCC | 3 cut(s) | 769, 858, 988 |
| ApaLI | GTGCAC | 1 cut(s) | 687 |
| ApeKI | GCWGC | 2 cut(s) | 65, 208 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 315 |
| AspLEI | GCGC | 1 cut(s) | 581 |
| AspS9I | GGNCC | 2 cut(s) | 178, 858 |
| AsuHPI | GGTGA | 2 cut(s) | 491, 761 |
| AvaI | CYCGRG | 1 cut(s) | 203 |
| AvaII | GGWCC | 1 cut(s) | 178 |
| AxyI | CCTNAGG | 1 cut(s) | 585 |
| BaeGI | GKGCMC | 1 cut(s) | 691 |
| BalI | TGGCCA | 1 cut(s) | 771 |
| BanI | GGYRCC | 1 cut(s) | 755 |
| BanII | GRGCYC | 1 cut(s) | 153 |
| BbsI | GAAGAC | 3 cut(s) | 386, 824, 984 |
| Bbv12I | GWGCWC | 2 cut(s) | 153, 691 |
| BbvI | GCAGC | 2 cut(s) | 52, 220 |
| BccI | CCATC | 4 cut(s) | 125, 252, 407, 780 |
| BceAI | ACGGC | 1 cut(s) | 769 |
| BcoDI | GTCTC | 1 cut(s) | 989 |
| BfaI | CTAG | 2 cut(s) | 183, 618 |
| BfmI | CTRYAG | 2 cut(s) | 532, 571 |
| BisI | GCNGC | 3 cut(s) | 66, 69, 209 |
| BlsI | GCNGC | 3 cut(s) | 67, 70, 210 |
| Bme18I | GGWCC | 1 cut(s) | 178 |
| BmeT110I | CYCGRG | 1 cut(s) | 203 |
| BmgT120I | GGNCC | 2 cut(s) | 178, 858 |
| BmiI | GGNNCC | 3 cut(s) | 180, 547, 757 |
| BmsI | GCATC | 1 cut(s) | 814 |
| BpiI | GAAGAC | 3 cut(s) | 386, 824, 984 |
| BpmI | CTGGAG | 1 cut(s) | 721 |
| BsaBI | GATNNNNATC | 1 cut(s) | 957 |
| BsaJI | CCNNGG | 1 cut(s) | 759 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 590, 661, 855 |
| Bse1I | ACTGG | 1 cut(s) | 1003 |
| Bse21I | CCTNAGG | 1 cut(s) | 585 |
| Bse8I | GATNNNNATC | 1 cut(s) | 957 |
| BseDI | CCNNGG | 1 cut(s) | 759 |
| BseGI | GGATG | 2 cut(s) | 10, 772 |
| BseJI | GATNNNNATC | 1 cut(s) | 957 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 590, 661, 855 |
| BseMII | CTCAG | 1 cut(s) | 959 |
| BseNI | ACTGG | 1 cut(s) | 1003 |
| BseSI | GKGCMC | 1 cut(s) | 691 |
| BseXI | GCAGC | 2 cut(s) | 52, 220 |
| BsgI | GTGCAG | 1 cut(s) | 42 |
| BshFI | GGCC | 3 cut(s) | 771, 860, 990 |
| BshNI | GGYRCC | 1 cut(s) | 755 |
| BsiHKAI | GWGCWC | 2 cut(s) | 153, 691 |
| BsiHKCI | CYCGRG | 1 cut(s) | 203 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 590, 661, 855 |
| BsmAI | GTCTC | 1 cut(s) | 989 |
| BsnI | GGCC | 3 cut(s) | 771, 860, 990 |
| BsoBI | CYCGRG | 1 cut(s) | 203 |
| Bsp1286I | GDGCHC | 2 cut(s) | 153, 691 |
| Bsp1407I | TGTACA | 1 cut(s) | 897 |
| Bsp143I | GATC | 3 cut(s) | 12, 946, 958 |
| BspACI | CCGC | 1 cut(s) | 69 |
| BspANI | GGCC | 3 cut(s) | 771, 860, 990 |
| BspCNI | CTCAG | 1 cut(s) | 960 |
| BspHI | TCATGA | 1 cut(s) | 466 |
| BspLI | GGNNCC | 3 cut(s) | 180, 547, 757 |
| BspPI | GGATC | 1 cut(s) | 20 |
| BspT107I | GGYRCC | 1 cut(s) | 755 |
| BsrGI | TGTACA | 1 cut(s) | 897 |
| BsrI | ACTGG | 1 cut(s) | 1003 |
| BssECI | CCNNGG | 1 cut(s) | 759 |
| BssMI | GATC | 3 cut(s) | 12, 946, 958 |
| BssT1I | CCWWGG | 1 cut(s) | 759 |
| Bst6I | CTCTTC | 2 cut(s) | 168, 710 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 65 |
| BstAUI | TGTACA | 1 cut(s) | 897 |
| BstDEI | CTNAG | 4 cut(s) | 16, 420, 585, 968 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 588 |
| BstF5I | GGATG | 2 cut(s) | 10, 772 |
| BstHHI | GCGC | 1 cut(s) | 581 |
| BstKTI | GATC | 3 cut(s) | 15, 949, 961 |
| BstMAI | GTCTC | 1 cut(s) | 989 |
| BstMBI | GATC | 3 cut(s) | 12, 946, 958 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 65, 77, 86, 107, 872, 923 |
| BstNSI | RCATGY | 1 cut(s) | 870 |
| BstSFI | CTRYAG | 2 cut(s) | 532, 571 |
| BstSLI | GKGCMC | 1 cut(s) | 691 |
| BstV1I | GCAGC | 2 cut(s) | 52, 220 |
| BstV2I | GAAGAC | 3 cut(s) | 386, 824, 984 |
| BstX2I | RGATCY | 1 cut(s) | 12 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 998 |
| BstYI | RGATCY | 1 cut(s) | 12 |
| Bsu36I | CCTNAGG | 1 cut(s) | 585 |
| BsuRI | GGCC | 3 cut(s) | 771, 860, 990 |
| BtsCI | GGATG | 2 cut(s) | 10, 772 |
| BtsIMutI | CAGTG | 1 cut(s) | 357 |
| CciI | TCATGA | 1 cut(s) | 466 |
| CfoI | GCGC | 1 cut(s) | 581 |
| Cfr13I | GGNCC | 2 cut(s) | 178, 858 |
| CseI | GACGC | 1 cut(s) | 834 |
| Csp6I | GTAC | 2 cut(s) | 163, 898 |
| CviAII | CATG | 5 cut(s) | 139, 467, 484, 837, 867 |
| CviQI | GTAC | 2 cut(s) | 163, 898 |
| DdeI | CTNAG | 4 cut(s) | 16, 420, 585, 968 |
| DpnI | GATC | 3 cut(s) | 14, 948, 960 |
| DpnII | GATC | 3 cut(s) | 12, 946, 958 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 639 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 639 |
| EaeI | YGGCCR | 1 cut(s) | 769 |
| Eam1104I | CTCTTC | 2 cut(s) | 168, 710 |
| EarI | CTCTTC | 2 cut(s) | 168, 710 |
| Ecl136II | GAGCTC | 1 cut(s) | 151 |
| Eco130I | CCWWGG | 1 cut(s) | 759 |
| Eco24I | GRGCYC | 1 cut(s) | 153 |
| Eco47I | GGWCC | 1 cut(s) | 178 |
| Eco53kI | GAGCTC | 1 cut(s) | 151 |
| Eco81I | CCTNAGG | 1 cut(s) | 585 |
| Eco88I | CYCGRG | 1 cut(s) | 203 |
| EcoICRI | GAGCTC | 1 cut(s) | 151 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 588 |
| EcoO109I | RGGNCCY | 1 cut(s) | 178 |
| EcoT14I | CCWWGG | 1 cut(s) | 759 |
| EcoT38I | GRGCYC | 1 cut(s) | 153 |
| ErhI | CCWWGG | 1 cut(s) | 759 |
| FaeI | CATG | 5 cut(s) | 142, 470, 487, 840, 870 |
| FatI | CATG | 5 cut(s) | 138, 466, 483, 836, 866 |
| Fnu4HI | GCNGC | 3 cut(s) | 66, 69, 209 |
| FokI | GGATG | 2 cut(s) | 17, 759 |
| FriOI | GRGCYC | 1 cut(s) | 153 |
| Fsp4HI | GCNGC | 3 cut(s) | 66, 69, 209 |
| FspBI | CTAG | 2 cut(s) | 183, 618 |
| GlaI | GCGC | 1 cut(s) | 580 |
| GluI | GCNGC | 3 cut(s) | 66, 69, 209 |
| GsuI | CTGGAG | 1 cut(s) | 721 |
| HaeIII | GGCC | 3 cut(s) | 771, 860, 990 |
| HgaI | GACGC | 1 cut(s) | 834 |
| HhaI | GCGC | 1 cut(s) | 581 |
| Hin1II | CATG | 5 cut(s) | 142, 470, 487, 840, 870 |
| Hin6I | GCGC | 1 cut(s) | 579 |
| HinP1I | GCGC | 1 cut(s) | 579 |
| HincII | GTYRAC | 1 cut(s) | 707 |
| HindII | GTYRAC | 1 cut(s) | 707 |
| HinfI | GANTC | 3 cut(s) | 382, 563, 809 |
| HphI | GGTGA | 2 cut(s) | 491, 761 |
| Hpy166II | GTNNAC | 3 cut(s) | 689, 707, 898 |
| Hpy188I | TCNGA | 4 cut(s) | 42, 310, 814, 969 |
| Hpy188III | TCNNGA | 6 cut(s) | 227, 242, 467, 630, 849, 950 |
| Hpy8I | GTNNAC | 3 cut(s) | 689, 707, 898 |
| HpyAV | CCTTC | 3 cut(s) | 326, 403, 659 |
| HpyCH4IV | ACGT | 8 cut(s) | 45, 222, 451, 489, 634, 709, 894, 905 |
| HpyCH4V | TGCA | 5 cut(s) | 59, 407, 446, 689, 890 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 65, 77, 86, 107, 872, 923 |
| HpyF3I | CTNAG | 4 cut(s) | 16, 420, 585, 968 |
| HpySE526I | ACGT | 8 cut(s) | 45, 222, 451, 489, 634, 709, 894, 905 |
| Hsp92II | CATG | 5 cut(s) | 142, 470, 487, 840, 870 |
| HspAI | GCGC | 1 cut(s) | 579 |
| Kzo9I | GATC | 3 cut(s) | 12, 946, 958 |
| LmnI | GCTCC | 2 cut(s) | 601, 842 |
| LpnPI | CCDG | 9 cut(s) | 69, 255, 552, 615, 624, 751, 862, 893, 984 |
| Lsp1109I | GCAGC | 2 cut(s) | 52, 220 |
| LweI | GCATC | 1 cut(s) | 814 |
| MaeI | CTAG | 2 cut(s) | 183, 618 |
| MaeII | ACGT | 8 cut(s) | 45, 222, 451, 489, 634, 709, 894, 905 |
| MaeIII | GTNAC | 3 cut(s) | 227, 479, 749 |
| MalI | GATC | 3 cut(s) | 14, 948, 960 |
| MboI | GATC | 3 cut(s) | 12, 946, 958 |
| MboII | GAAGA | 6 cut(s) | 185, 391, 727, 824, 956, 989 |
| MflI | RGATCY | 1 cut(s) | 12 |
| MhlI | GDGCHC | 2 cut(s) | 153, 691 |
| MlsI | TGGCCA | 1 cut(s) | 771 |
| MluCI | AATT | 6 cut(s) | 212, 304, 424, 625, 694, 928 |
| MluNI | TGGCCA | 1 cut(s) | 771 |
| MlyI | GAGTC | 3 cut(s) | 376, 572, 818 |
| Mox20I | TGGCCA | 1 cut(s) | 771 |
| MroXI | GAANNNNTTC | 1 cut(s) | 315 |
| MscI | TGGCCA | 1 cut(s) | 771 |
| MseI | TTAA | 1 cut(s) | 1012 |
| MslI | CAYNNNNRTG | 6 cut(s) | 125, 141, 276, 747, 822, 882 |
| Msp20I | TGGCCA | 1 cut(s) | 771 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 65, 77, 86, 107, 872, 923 |
| NdeII | GATC | 3 cut(s) | 12, 946, 958 |
| NlaIII | CATG | 5 cut(s) | 142, 470, 487, 840, 870 |
| NlaIV | GGNNCC | 3 cut(s) | 180, 547, 757 |
| NmuCI | GTSAC | 3 cut(s) | 227, 479, 749 |
| NspI | RCATGY | 1 cut(s) | 870 |
| OliI | CACNNNNGTG | 1 cut(s) | 276 |
| PaeR7I | CTCGAG | 1 cut(s) | 203 |
| PagI | TCATGA | 1 cut(s) | 466 |
| PdmI | GAANNNNTTC | 1 cut(s) | 315 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 855 |
| PkrI | GCNGC | 3 cut(s) | 67, 70, 210 |
| PleI | GAGTC | 3 cut(s) | 376, 571, 817 |
| PpsI | GAGTC | 3 cut(s) | 376, 571, 817 |
| PpuMI | RGGWCCY | 1 cut(s) | 178 |
| Psp124BI | GAGCTC | 1 cut(s) | 153 |
| Psp1406I | AACGTT | 1 cut(s) | 222 |
| Psp5II | RGGWCCY | 1 cut(s) | 178 |
| PspN4I | GGNNCC | 3 cut(s) | 180, 547, 757 |
| PspPI | GGNCC | 2 cut(s) | 178, 858 |
| PspPPI | RGGWCCY | 1 cut(s) | 178 |
| PspXI | VCTCGAGB | 1 cut(s) | 203 |
| PsuI | RGATCY | 1 cut(s) | 12 |
| RsaI | GTAC | 2 cut(s) | 164, 899 |
| RsaNI | GTAC | 2 cut(s) | 163, 898 |
| RseI | CAYNNNNRTG | 6 cut(s) | 125, 141, 276, 747, 822, 882 |
| SacI | GAGCTC | 1 cut(s) | 153 |
| SaqAI | TTAA | 1 cut(s) | 1012 |
| SatI | GCNGC | 3 cut(s) | 66, 69, 209 |
| Sau3AI | GATC | 3 cut(s) | 12, 946, 958 |
| Sau96I | GGNCC | 2 cut(s) | 178, 858 |
| SchI | GAGTC | 3 cut(s) | 376, 572, 818 |
| SduI | GDGCHC | 2 cut(s) | 153, 691 |
| SfaNI | GCATC | 1 cut(s) | 814 |
| SfcI | CTRYAG | 2 cut(s) | 532, 571 |
| Sfr274I | CTCGAG | 1 cut(s) | 203 |
| SinI | GGWCC | 1 cut(s) | 178 |
| SlaI | CTCGAG | 1 cut(s) | 203 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 125, 141, 276, 747, 822, 882 |
| SmlI | CTYRAG | 1 cut(s) | 203 |
| SmoI | CTYRAG | 1 cut(s) | 203 |
| Sse9I | AATT | 6 cut(s) | 212, 304, 424, 625, 694, 928 |
| SsiI | CCGC | 1 cut(s) | 69 |
| SspMI | CTAG | 2 cut(s) | 183, 618 |
| SstI | GAGCTC | 1 cut(s) | 153 |
| StyI | CCWWGG | 1 cut(s) | 759 |
| TaiI | ACGT | 8 cut(s) | 48, 225, 454, 492, 637, 712, 897, 908 |
| TaqI | TCGA | 1 cut(s) | 204 |
| TasI | AATT | 6 cut(s) | 212, 304, 424, 625, 694, 928 |
| TatI | WGTACW | 1 cut(s) | 897 |
| TauI | GCSGC | 1 cut(s) | 71 |
| Tru1I | TTAA | 1 cut(s) | 1012 |
| Tru9I | TTAA | 1 cut(s) | 1012 |
| TscAI | CASTG | 1 cut(s) | 364 |
| TseFI | GTSAC | 3 cut(s) | 227, 479, 749 |
| TseI | GCWGC | 2 cut(s) | 65, 208 |
| Tsp45I | GTSAC | 3 cut(s) | 227, 479, 749 |
| TspDTI | ATGAA | 5 cut(s) | 21, 155, 186, 455, 500 |
| TspGWI | ACGGA | 2 cut(s) | 614, 821 |
| TspRI | CASTG | 1 cut(s) | 364 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 855 |
| VneI | GTGCAC | 1 cut(s) | 687 |
| VpaK11BI | GGWCC | 1 cut(s) | 178 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 588 |
| XceI | RCATGY | 1 cut(s) | 870 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 556 |
| XhoI | CTCGAG | 1 cut(s) | 203 |
| XmnI | GAANNNNTTC | 1 cut(s) | 315 |
| XspI | CTAG | 2 cut(s) | 183, 618 |