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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 440 |
| AciI | CCGC | 1 cut(s) | 93 |
| AcsI | RAATTY | 1 cut(s) | 160 |
| AcyI | GRCGYC | 1 cut(s) | 554 |
| AfaI | GTAC | 1 cut(s) | 116 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 462 |
| AflIII | ACRYGT | 1 cut(s) | 510 |
| AgsI | TTSAA | 1 cut(s) | 108 |
| AluBI | AGCT | 3 cut(s) | 12, 273, 295 |
| AluI | AGCT | 3 cut(s) | 12, 273, 295 |
| Alw21I | GWGCWC | 1 cut(s) | 492 |
| Alw44I | GTGCAC | 1 cut(s) | 488 |
| Ama87I | CYCGRG | 1 cut(s) | 25 |
| AoxI | GGCC | 1 cut(s) | 528 |
| ApaLI | GTGCAC | 1 cut(s) | 488 |
| ApeKI | GCWGC | 1 cut(s) | 30 |
| ApoI | RAATTY | 1 cut(s) | 160 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 349, 381 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 137 |
| AspS9I | GGNCC | 1 cut(s) | 442 |
| AsuHPI | GGTGA | 1 cut(s) | 562 |
| AvaI | CYCGRG | 1 cut(s) | 25 |
| AvaII | GGWCC | 1 cut(s) | 442 |
| BaeGI | GKGCMC | 1 cut(s) | 492 |
| BbsI | GAAGAC | 1 cut(s) | 208 |
| Bbv12I | GWGCWC | 1 cut(s) | 492 |
| BbvI | GCAGC | 1 cut(s) | 42 |
| BccI | CCATC | 2 cut(s) | 74, 150 |
| BfaI | CTAG | 3 cut(s) | 248, 335, 431 |
| BisI | GCNGC | 1 cut(s) | 31 |
| BlsI | GCNGC | 1 cut(s) | 32 |
| Bme18I | GGWCC | 1 cut(s) | 442 |
| BmeT110I | CYCGRG | 1 cut(s) | 25 |
| BmgT120I | GGNCC | 1 cut(s) | 442 |
| BmiI | GGNNCC | 2 cut(s) | 282, 348 |
| BmsI | GCATC | 1 cut(s) | 263 |
| BpiI | GAAGAC | 1 cut(s) | 208 |
| BpmI | CTGGAG | 1 cut(s) | 382 |
| Bpu10I | CCTNAGC | 1 cut(s) | 216 |
| BsaBI | GATNNNNATC | 1 cut(s) | 193 |
| BsaHI | GRCGYC | 1 cut(s) | 554 |
| BsaJI | CCNNGG | 4 cut(s) | 341, 386, 498, 560 |
| BsaWI | WCCGGW | 1 cut(s) | 538 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 462 |
| Bse8I | GATNNNNATC | 1 cut(s) | 193 |
| BseDI | CCNNGG | 4 cut(s) | 341, 386, 498, 560 |
| BseJI | GATNNNNATC | 1 cut(s) | 193 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 462 |
| BseSI | GKGCMC | 1 cut(s) | 492 |
| BseXI | GCAGC | 1 cut(s) | 42 |
| BshFI | GGCC | 1 cut(s) | 530 |
| BsiHKAI | GWGCWC | 1 cut(s) | 492 |
| BsiHKCI | CYCGRG | 1 cut(s) | 25 |
| BsiSI | CCGG | 1 cut(s) | 539 |
| BslFI | GGGAC | 1 cut(s) | 436 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 462 |
| BsmFI | GGGAC | 1 cut(s) | 436 |
| BsnI | GGCC | 1 cut(s) | 530 |
| BsoBI | CYCGRG | 1 cut(s) | 25 |
| Bsp1286I | GDGCHC | 1 cut(s) | 492 |
| Bsp143I | GATC | 1 cut(s) | 194 |
| BspACI | CCGC | 1 cut(s) | 93 |
| BspANI | GGCC | 1 cut(s) | 530 |
| BspHI | TCATGA | 1 cut(s) | 267 |
| BspLI | GGNNCC | 2 cut(s) | 282, 348 |
| BssECI | CCNNGG | 4 cut(s) | 341, 386, 498, 560 |
| BssMI | GATC | 1 cut(s) | 194 |
| BssNI | GRCGYC | 1 cut(s) | 554 |
| BssT1I | CCWWGG | 2 cut(s) | 386, 560 |
| Bst4CI | ACNGT | 2 cut(s) | 499, 574 |
| BstACI | GRCGYC | 1 cut(s) | 554 |
| BstC8I | GCNNGC | 1 cut(s) | 488 |
| BstDEI | CTNAG | 3 cut(s) | 69, 216, 413 |
| BstDSI | CCRYGG | 2 cut(s) | 341, 498 |
| BstKTI | GATC | 1 cut(s) | 197 |
| BstMBI | GATC | 1 cut(s) | 194 |
| BstSLI | GKGCMC | 1 cut(s) | 492 |
| BstV1I | GCAGC | 1 cut(s) | 42 |
| BstV2I | GAAGAC | 1 cut(s) | 208 |
| BsuRI | GGCC | 1 cut(s) | 530 |
| BtgI | CCRYGG | 2 cut(s) | 341, 498 |
| BtsIMutI | CAGTG | 1 cut(s) | 179 |
| Cac8I | GCNNGC | 1 cut(s) | 488 |
| CciI | TCATGA | 1 cut(s) | 267 |
| Cfr13I | GGNCC | 1 cut(s) | 442 |
| CseI | GACGC | 3 cut(s) | 260, 404, 562 |
| Csp6I | GTAC | 1 cut(s) | 115 |
| CviAII | CATG | 3 cut(s) | 238, 268, 285 |
| CviJI | RGCY | 9 cut(s) | 12, 89, 220, 273, 283, 295, 476, 530, 535 |
| CviKI_1 | RGCY | 9 cut(s) | 12, 89, 220, 273, 283, 295, 476, 530, 535 |
| CviQI | GTAC | 1 cut(s) | 115 |
| DdeI | CTNAG | 3 cut(s) | 69, 216, 413 |
| DpnI | GATC | 1 cut(s) | 196 |
| DpnII | GATC | 1 cut(s) | 194 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 440 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 440 |
| Eco130I | CCWWGG | 2 cut(s) | 386, 560 |
| Eco47I | GGWCC | 1 cut(s) | 442 |
| Eco88I | CYCGRG | 1 cut(s) | 25 |
| EcoRI | GAATTC | 1 cut(s) | 160 |
| EcoT14I | CCWWGG | 2 cut(s) | 386, 560 |
| ErhI | CCWWGG | 2 cut(s) | 386, 560 |
| FaeI | CATG | 3 cut(s) | 241, 271, 288 |
| FaqI | GGGAC | 1 cut(s) | 436 |
| FatI | CATG | 3 cut(s) | 237, 267, 284 |
| Fnu4HI | GCNGC | 1 cut(s) | 31 |
| Fsp4HI | GCNGC | 1 cut(s) | 31 |
| FspBI | CTAG | 3 cut(s) | 248, 335, 431 |
| GluI | GCNGC | 1 cut(s) | 31 |
| GsuI | CTGGAG | 1 cut(s) | 382 |
| HaeIII | GGCC | 1 cut(s) | 530 |
| HapII | CCGG | 1 cut(s) | 539 |
| HgaI | GACGC | 3 cut(s) | 260, 404, 562 |
| Hin1I | GRCGYC | 1 cut(s) | 554 |
| Hin1II | CATG | 3 cut(s) | 241, 271, 288 |
| HinfI | GANTC | 4 cut(s) | 52, 204, 234, 364 |
| HpaII | CCGG | 1 cut(s) | 539 |
| HphI | GGTGA | 1 cut(s) | 562 |
| Hpy166II | GTNNAC | 2 cut(s) | 490, 508 |
| Hpy188I | TCNGA | 2 cut(s) | 132, 233 |
| Hpy188III | TCNNGA | 5 cut(s) | 198, 268, 335, 361, 431 |
| Hpy8I | GTNNAC | 2 cut(s) | 490, 508 |
| HpyAV | CCTTC | 1 cut(s) | 460 |
| HpyCH4III | ACNGT | 2 cut(s) | 499, 574 |
| HpyCH4IV | ACGT | 3 cut(s) | 44, 435, 510 |
| HpyCH4V | TGCA | 1 cut(s) | 490 |
| HpyF3I | CTNAG | 3 cut(s) | 69, 216, 413 |
| HpySE526I | ACGT | 3 cut(s) | 44, 435, 510 |
| Hsp92I | GRCGYC | 1 cut(s) | 554 |
| Hsp92II | CATG | 3 cut(s) | 241, 271, 288 |
| Kzo9I | GATC | 1 cut(s) | 194 |
| LmnI | GCTCC | 2 cut(s) | 280, 402 |
| LpnPI | CCDG | 3 cut(s) | 70, 346, 552 |
| Lsp1109I | GCAGC | 1 cut(s) | 42 |
| LweI | GCATC | 1 cut(s) | 263 |
| MaeI | CTAG | 3 cut(s) | 248, 335, 431 |
| MaeII | ACGT | 3 cut(s) | 44, 435, 510 |
| MaeIII | GTNAC | 3 cut(s) | 376, 550, 565 |
| MalI | GATC | 1 cut(s) | 196 |
| MboI | GATC | 1 cut(s) | 194 |
| MboII | GAAGA | 3 cut(s) | 213, 333, 528 |
| MhlI | GDGCHC | 1 cut(s) | 492 |
| MluCI | AATT | 5 cut(s) | 126, 160, 275, 369, 426 |
| MlyI | GAGTC | 2 cut(s) | 198, 373 |
| MnlI | CCTC | 7 cut(s) | 100, 385, 393, 456, 496, 520, 546 |
| MroXI | GAANNNNTTC | 1 cut(s) | 137 |
| MseI | TTAA | 1 cut(s) | 242 |
| MslI | CAYNNNNRTG | 2 cut(s) | 242, 316 |
| MspI | CCGG | 1 cut(s) | 539 |
| NdeII | GATC | 1 cut(s) | 194 |
| NlaIII | CATG | 3 cut(s) | 241, 271, 288 |
| NlaIV | GGNNCC | 2 cut(s) | 282, 348 |
| NmuCI | GTSAC | 2 cut(s) | 376, 550 |
| PaeR7I | CTCGAG | 1 cut(s) | 25 |
| PagI | TCATGA | 1 cut(s) | 267 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 402 |
| PdmI | GAANNNNTTC | 1 cut(s) | 137 |
| PfeI | GAWTC | 2 cut(s) | 52, 234 |
| PkrI | GCNGC | 1 cut(s) | 32 |
| PleI | GAGTC | 2 cut(s) | 198, 372 |
| PpsI | GAGTC | 2 cut(s) | 198, 372 |
| PspN4I | GGNNCC | 2 cut(s) | 282, 348 |
| PspPI | GGNCC | 1 cut(s) | 442 |
| PspXI | VCTCGAGB | 1 cut(s) | 25 |
| RsaI | GTAC | 1 cut(s) | 116 |
| RsaNI | GTAC | 1 cut(s) | 115 |
| RseI | CAYNNNNRTG | 2 cut(s) | 242, 316 |
| SaqAI | TTAA | 1 cut(s) | 242 |
| SatI | GCNGC | 1 cut(s) | 31 |
| Sau3AI | GATC | 1 cut(s) | 194 |
| Sau96I | GGNCC | 1 cut(s) | 442 |
| SchI | GAGTC | 2 cut(s) | 198, 373 |
| SduI | GDGCHC | 1 cut(s) | 492 |
| SetI | ASST | 8 cut(s) | 14, 47, 217, 275, 297, 438, 507, 513 |
| SfaNI | GCATC | 1 cut(s) | 263 |
| Sfr274I | CTCGAG | 1 cut(s) | 25 |
| SinI | GGWCC | 1 cut(s) | 442 |
| SlaI | CTCGAG | 1 cut(s) | 25 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 242, 316 |
| SmlI | CTYRAG | 1 cut(s) | 25 |
| SmoI | CTYRAG | 1 cut(s) | 25 |
| Sse9I | AATT | 5 cut(s) | 126, 160, 275, 369, 426 |
| SsiI | CCGC | 1 cut(s) | 93 |
| SspMI | CTAG | 3 cut(s) | 248, 335, 431 |
| StyI | CCWWGG | 2 cut(s) | 386, 560 |
| TaaI | ACNGT | 2 cut(s) | 499, 574 |
| TaiI | ACGT | 3 cut(s) | 47, 438, 513 |
| TaqI | TCGA | 2 cut(s) | 26, 197 |
| TasI | AATT | 5 cut(s) | 126, 160, 275, 369, 426 |
| TatI | WGTACW | 1 cut(s) | 114 |
| TfiI | GAWTC | 2 cut(s) | 52, 234 |
| Tru1I | TTAA | 1 cut(s) | 242 |
| Tru9I | TTAA | 1 cut(s) | 242 |
| TscAI | CASTG | 1 cut(s) | 186 |
| TseFI | GTSAC | 2 cut(s) | 376, 550 |
| TseI | GCWGC | 1 cut(s) | 30 |
| Tsp45I | GTSAC | 2 cut(s) | 376, 550 |
| TspDTI | ATGAA | 3 cut(s) | 226, 256, 301 |
| TspGWI | ACGGA | 1 cut(s) | 37 |
| TspRI | CASTG | 1 cut(s) | 186 |
| VneI | GTGCAC | 1 cut(s) | 488 |
| VpaK11BI | GGWCC | 1 cut(s) | 442 |
| XapI | RAATTY | 1 cut(s) | 160 |
| XbaI | TCTAGA | 2 cut(s) | 334, 430 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 11, 357 |
| XhoI | CTCGAG | 1 cut(s) | 25 |
| XmnI | GAANNNNTTC | 1 cut(s) | 137 |
| XspI | CTAG | 3 cut(s) | 248, 335, 431 |