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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 3 cut(s) | 1062, 1095, 1107 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 1173 |
| AccB1I | GGYRCC | 3 cut(s) | 598, 1244, 1309 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 187, 1279 |
| AccBSI | CCGCTC | 1 cut(s) | 1138 |
| AccI | GTMKAC | 2 cut(s) | 277, 813 |
| AccII | CGCG | 1 cut(s) | 53 |
| AclWI | GGATC | 7 cut(s) | 197, 210, 341, 354, 574, 587, 995 |
| AcoI | YGGCCR | 2 cut(s) | 328, 472 |
| AcuI | CTGAAG | 1 cut(s) | 429 |
| AcyI | GRCGYC | 3 cut(s) | 297, 667, 1310 |
| AfaI | GTAC | 3 cut(s) | 152, 214, 443 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 22, 141, 187, 326, 337, 1195, 1279 |
| AflIII | ACRYGT | 1 cut(s) | 1168 |
| AgeI | ACCGGT | 1 cut(s) | 195 |
| AgsI | TTSAA | 6 cut(s) | 512, 527, 573, 784, 791, 1068 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 174, 820 |
| AjiI | CACGTC | 3 cut(s) | 64, 1169, 1279 |
| AjnI | CCWGG | 4 cut(s) | 109, 304, 759, 1272 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 443, 475, 732, 764 |
| AluBI | AGCT | 8 cut(s) | 28, 105, 530, 613, 848, 1006, 1028, 1270 |
| AluI | AGCT | 8 cut(s) | 28, 105, 530, 613, 848, 1006, 1028, 1270 |
| Alw21I | GWGCWC | 2 cut(s) | 975, 1272 |
| Alw26I | GTCTC | 2 cut(s) | 658, 832 |
| AlwI | GGATC | 7 cut(s) | 197, 210, 341, 354, 574, 587, 995 |
| AoxI | GGCC | 6 cut(s) | 307, 328, 377, 472, 1070, 1260 |
| ApaI | GGGCCC | 1 cut(s) | 381 |
| ApeKI | GCWGC | 1 cut(s) | 224 |
| AseI | ATTAAT | 1 cut(s) | 1011 |
| AsiGI | ACCGGT | 1 cut(s) | 195 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 917 |
| AspLEI | GCGC | 3 cut(s) | 53, 736, 1312 |
| AspS9I | GGNCC | 5 cut(s) | 377, 378, 1071, 1175, 1260 |
| AsuC2I | CCSGG | 2 cut(s) | 311, 351 |
| AsuHPI | GGTGA | 9 cut(s) | 83, 269, 352, 377, 407, 474, 916, 980, 1111 |
| AvaII | GGWCC | 1 cut(s) | 1175 |
| BaeGI | GKGCMC | 1 cut(s) | 381 |
| BamHI | GGATCC | 3 cut(s) | 202, 346, 579 |
| BanI | GGYRCC | 3 cut(s) | 598, 1244, 1309 |
| BanII | GRGCYC | 2 cut(s) | 381, 1272 |
| BauI | CACGAG | 2 cut(s) | 991, 1049 |
| Bbv12I | GWGCWC | 2 cut(s) | 975, 1272 |
| BbvCI | CCTCAGC | 1 cut(s) | 290 |
| BbvI | GCAGC | 1 cut(s) | 236 |
| BccI | CCATC | 7 cut(s) | 337, 498, 512, 570, 896, 941, 978 |
| BceAI | ACGGC | 3 cut(s) | 64, 296, 1247 |
| BciT130I | CCWGG | 4 cut(s) | 111, 306, 761, 1274 |
| BciVI | GTATCC | 2 cut(s) | 130, 961 |
| BcnI | CCSGG | 2 cut(s) | 311, 351 |
| BcoDI | GTCTC | 2 cut(s) | 658, 832 |
| BfaI | CTAG | 5 cut(s) | 242, 324, 717, 737, 1322 |
| BfmI | CTRYAG | 1 cut(s) | 1023 |
| BfoI | RGCGCY | 1 cut(s) | 1313 |
| BfuI | GTATCC | 2 cut(s) | 130, 961 |
| BisI | GCNGC | 4 cut(s) | 59, 225, 424, 455 |
| BlsI | GCNGC | 4 cut(s) | 60, 226, 425, 456 |
| Bme1390I | CCNGG | 6 cut(s) | 111, 306, 311, 351, 761, 1274 |
| Bme18I | GGWCC | 1 cut(s) | 1175 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 174, 820 |
| BmgBI | CACGTC | 3 cut(s) | 64, 1169, 1279 |
| BmgT120I | GGNCC | 5 cut(s) | 377, 378, 1071, 1175, 1260 |
| BmrFI | CCNGG | 6 cut(s) | 111, 306, 311, 351, 761, 1274 |
| BmsI | GCATC | 4 cut(s) | 24, 488, 703, 1318 |
| BpmI | CTGGAG | 1 cut(s) | 1256 |
| Bpu10I | CCTNAGC | 3 cut(s) | 94, 290, 609 |
| BpuEI | CTTGAG | 1 cut(s) | 502 |
| BpuMI | CCSGG | 2 cut(s) | 311, 351 |
| BsaBI | GATNNNNATC | 2 cut(s) | 207, 1332 |
| BsaHI | GRCGYC | 3 cut(s) | 297, 667, 1310 |
| BsaJI | CCNNGG | 4 cut(s) | 88, 1248, 1263, 1293 |
| BsaWI | WCCGGW | 1 cut(s) | 195 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 449, 479 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 22, 141, 187, 326, 337, 1195, 1279 |
| Bse118I | RCCGGY | 2 cut(s) | 195, 470 |
| Bse1I | ACTGG | 1 cut(s) | 270 |
| Bse3DI | GCAATG | 1 cut(s) | 645 |
| Bse8I | GATNNNNATC | 2 cut(s) | 207, 1332 |
| BseBI | CCWGG | 4 cut(s) | 111, 306, 761, 1274 |
| BseDI | CCNNGG | 4 cut(s) | 88, 1248, 1263, 1293 |
| BseGI | GGATG | 4 cut(s) | 446, 989, 1044, 1333 |
| BseJI | GATNNNNATC | 2 cut(s) | 207, 1332 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 22, 141, 187, 326, 337, 1195, 1279 |
| BseMI | GCAATG | 1 cut(s) | 645 |
| BseMII | CTCAG | 4 cut(s) | 108, 281, 951, 1020 |
| BseNI | ACTGG | 1 cut(s) | 270 |
| BseRI | GAGGAG | 3 cut(s) | 454, 761, 1298 |
| BseSI | GKGCMC | 1 cut(s) | 381 |
| BseXI | GCAGC | 1 cut(s) | 236 |
| BseYI | CCCAGC | 1 cut(s) | 15 |
| Bsh1236I | CGCG | 1 cut(s) | 53 |
| Bsh1285I | CGRYCG | 2 cut(s) | 200, 211 |
| BshFI | GGCC | 6 cut(s) | 309, 330, 379, 474, 1072, 1262 |
| BshNI | GGYRCC | 3 cut(s) | 598, 1244, 1309 |
| BshTI | ACCGGT | 1 cut(s) | 195 |
| BsiEI | CGRYCG | 2 cut(s) | 200, 211 |
| BsiHKAI | GWGCWC | 2 cut(s) | 975, 1272 |
| BsiSI | CCGG | 5 cut(s) | 196, 310, 331, 350, 471 |
| BslFI | GGGAC | 1 cut(s) | 1170 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 22, 141, 187, 326, 337, 1195, 1279 |
| BsmAI | GTCTC | 2 cut(s) | 658, 832 |
| BsmBI | CGTCTC | 2 cut(s) | 658, 832 |
| BsmFI | GGGAC | 1 cut(s) | 1170 |
| BsnI | GGCC | 6 cut(s) | 309, 330, 379, 474, 1072, 1262 |
| Bsp120I | GGGCCC | 1 cut(s) | 377 |
| Bsp1286I | GDGCHC | 3 cut(s) | 381, 975, 1272 |
| Bsp143I | GATC | 7 cut(s) | 73, 202, 208, 232, 346, 579, 987 |
| Bsp19I | CCATGG | 1 cut(s) | 1248 |
| BspANI | GGCC | 6 cut(s) | 309, 330, 379, 474, 1072, 1262 |
| BspCNI | CTCAG | 4 cut(s) | 107, 282, 950, 1021 |
| BspFNI | CGCG | 1 cut(s) | 53 |
| BspPI | GGATC | 7 cut(s) | 197, 210, 341, 354, 574, 587, 995 |
| BspT107I | GGYRCC | 3 cut(s) | 598, 1244, 1309 |
| BsrBI | CCGCTC | 1 cut(s) | 1138 |
| BsrDI | GCAATG | 1 cut(s) | 645 |
| BsrFI | RCCGGY | 2 cut(s) | 195, 470 |
| BsrI | ACTGG | 1 cut(s) | 270 |
| BssAI | RCCGGY | 2 cut(s) | 195, 470 |
| BssECI | CCNNGG | 4 cut(s) | 88, 1248, 1263, 1293 |
| BssMI | GATC | 7 cut(s) | 73, 202, 208, 232, 346, 579, 987 |
| BssNI | GRCGYC | 3 cut(s) | 297, 667, 1310 |
| BssSI | CACGAG | 2 cut(s) | 991, 1049 |
| BssT1I | CCWWGG | 3 cut(s) | 88, 1248, 1293 |
| Bst2BI | CACGAG | 2 cut(s) | 991, 1049 |
| Bst2UI | CCWGG | 4 cut(s) | 111, 306, 761, 1274 |
| Bst4CI | ACNGT | 4 cut(s) | 364, 395, 441, 1210 |
| Bst6I | CTCTTC | 1 cut(s) | 735 |
| BstACI | GRCGYC | 3 cut(s) | 297, 667, 1310 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1348 |
| BstC8I | GCNNGC | 2 cut(s) | 107, 377 |
| BstDEI | CTNAG | 8 cut(s) | 94, 219, 290, 494, 609, 937, 1029, 1083 |
| BstDSI | CCRYGG | 2 cut(s) | 1248, 1263 |
| BstEII | GGTNACC | 1 cut(s) | 358 |
| BstF5I | GGATG | 4 cut(s) | 446, 989, 1044, 1333 |
| BstFNI | CGCG | 1 cut(s) | 53 |
| BstH2I | RGCGCY | 1 cut(s) | 1313 |
| BstHHI | GCGC | 3 cut(s) | 53, 736, 1312 |
| BstKTI | GATC | 7 cut(s) | 76, 205, 211, 235, 349, 582, 990 |
| BstMAI | GTCTC | 2 cut(s) | 658, 832 |
| BstMBI | GATC | 7 cut(s) | 73, 202, 208, 232, 346, 579, 987 |
| BstMCI | CGRYCG | 2 cut(s) | 200, 211 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 25, 34, 43, 111, 315, 1135, 1348 |
| BstNI | CCWGG | 4 cut(s) | 111, 306, 761, 1274 |
| BstPI | GGTNACC | 1 cut(s) | 358 |
| BstSCI | CCNGG | 6 cut(s) | 109, 304, 309, 349, 759, 1272 |
| BstSFI | CTRYAG | 1 cut(s) | 1023 |
| BstSLI | GKGCMC | 1 cut(s) | 381 |
| BstUI | CGCG | 1 cut(s) | 53 |
| BstV1I | GCAGC | 1 cut(s) | 236 |
| BstX2I | RGATCY | 3 cut(s) | 202, 346, 579 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1300 |
| BstYI | RGATCY | 3 cut(s) | 202, 346, 579 |
| BsuI | GTATCC | 2 cut(s) | 130, 961 |
| BsuRI | GGCC | 6 cut(s) | 309, 330, 379, 474, 1072, 1262 |
| BtgI | CCRYGG | 2 cut(s) | 1248, 1263 |
| BtrI | CACGTC | 3 cut(s) | 64, 1169, 1279 |
| BtsCI | GGATG | 4 cut(s) | 446, 989, 1044, 1333 |
| BtsI | GCAGTG | 2 cut(s) | 402, 418 |
| BtsIMutI | CAGTG | 4 cut(s) | 277, 402, 418, 437 |
| Cac8I | GCNNGC | 2 cut(s) | 107, 377 |
| CfoI | GCGC | 3 cut(s) | 53, 736, 1312 |
| Cfr10I | RCCGGY | 2 cut(s) | 195, 470 |
| Cfr13I | GGNCC | 5 cut(s) | 377, 378, 1071, 1175, 1260 |
| CseI | GACGC | 3 cut(s) | 8, 286, 675 |
| Csp6I | GTAC | 3 cut(s) | 151, 213, 442 |
| CspAI | ACCGGT | 1 cut(s) | 195 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 253, 288 |
| CviAII | CATG | 7 cut(s) | 700, 865, 1018, 1037, 1231, 1241, 1249 |
| CviQI | GTAC | 3 cut(s) | 151, 213, 442 |
| DdeI | CTNAG | 8 cut(s) | 94, 219, 290, 494, 609, 937, 1029, 1083 |
| DinI | GGCGCC | 1 cut(s) | 1311 |
| DpnI | GATC | 7 cut(s) | 75, 204, 210, 234, 348, 581, 989 |
| DpnII | GATC | 7 cut(s) | 73, 202, 208, 232, 346, 579, 987 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1173 |
| DriI | GACNNNNNGTC | 2 cut(s) | 174, 820 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1173 |
| EaeI | YGGCCR | 2 cut(s) | 328, 472 |
| Eam1104I | CTCTTC | 1 cut(s) | 735 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 174, 820 |
| EarI | CTCTTC | 1 cut(s) | 735 |
| EciI | GGCGGA | 1 cut(s) | 298 |
| Ecl136II | GAGCTC | 1 cut(s) | 1270 |
| Eco130I | CCWWGG | 3 cut(s) | 88, 1248, 1293 |
| Eco24I | GRGCYC | 2 cut(s) | 381, 1272 |
| Eco47I | GGWCC | 1 cut(s) | 1175 |
| Eco53kI | GAGCTC | 1 cut(s) | 1270 |
| Eco57I | CTGAAG | 1 cut(s) | 429 |
| Eco91I | GGTNACC | 1 cut(s) | 358 |
| EcoICRI | GAGCTC | 1 cut(s) | 1270 |
| EcoO109I | RGGNCCY | 1 cut(s) | 378 |
| EcoO65I | GGTNACC | 1 cut(s) | 358 |
| EcoRII | CCWGG | 4 cut(s) | 109, 304, 759, 1272 |
| EcoT14I | CCWWGG | 3 cut(s) | 88, 1248, 1293 |
| EcoT38I | GRGCYC | 2 cut(s) | 381, 1272 |
| EgeI | GGCGCC | 1 cut(s) | 1311 |
| EheI | GGCGCC | 1 cut(s) | 1311 |
| ErhI | CCWWGG | 3 cut(s) | 88, 1248, 1293 |
| Esp3I | CGTCTC | 2 cut(s) | 658, 832 |
| FaeI | CATG | 7 cut(s) | 703, 868, 1021, 1040, 1234, 1244, 1252 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 212, 244, 443, 475 |
| FaqI | GGGAC | 1 cut(s) | 1170 |
| FatI | CATG | 7 cut(s) | 699, 864, 1017, 1036, 1230, 1240, 1248 |
| FauI | CCCGC | 2 cut(s) | 134, 368 |
| FauNDI | CATATG | 2 cut(s) | 627, 672 |
| FblI | GTMKAC | 2 cut(s) | 277, 813 |
| Fnu4HI | GCNGC | 4 cut(s) | 59, 225, 424, 455 |
| FokI | GGATG | 4 cut(s) | 433, 996, 1031, 1340 |
| FriOI | GRGCYC | 2 cut(s) | 381, 1272 |
| Fsp4HI | GCNGC | 4 cut(s) | 59, 225, 424, 455 |
| FspBI | CTAG | 5 cut(s) | 242, 324, 717, 737, 1322 |
| GlaI | GCGC | 3 cut(s) | 52, 735, 1311 |
| GluI | GCNGC | 4 cut(s) | 59, 225, 424, 455 |
| GsaI | CCCAGC | 1 cut(s) | 19 |
| GsuI | CTGGAG | 1 cut(s) | 1256 |
| HaeII | RGCGCY | 1 cut(s) | 1313 |
| HaeIII | GGCC | 6 cut(s) | 309, 330, 379, 474, 1072, 1262 |
| HapII | CCGG | 5 cut(s) | 196, 310, 331, 350, 471 |
| HgaI | GACGC | 3 cut(s) | 8, 286, 675 |
| HhaI | GCGC | 3 cut(s) | 53, 736, 1312 |
| Hin1I | GRCGYC | 3 cut(s) | 297, 667, 1310 |
| Hin1II | CATG | 7 cut(s) | 703, 868, 1021, 1040, 1234, 1244, 1252 |
| Hin6I | GCGC | 3 cut(s) | 51, 734, 1310 |
| HinP1I | GCGC | 3 cut(s) | 51, 734, 1310 |
| HincII | GTYRAC | 2 cut(s) | 278, 814 |
| HindII | GTYRAC | 2 cut(s) | 278, 814 |
| HinfI | GANTC | 7 cut(s) | 145, 515, 535, 764, 807, 873, 1286 |
| HpaII | CCGG | 5 cut(s) | 196, 310, 331, 350, 471 |
| HphI | GGTGA | 9 cut(s) | 83, 269, 352, 377, 407, 474, 916, 980, 1111 |
| Hpy166II | GTNNAC | 4 cut(s) | 278, 415, 814, 881 |
| Hpy188I | TCNGA | 5 cut(s) | 33, 168, 202, 534, 832 |
| Hpy188III | TCNNGA | 6 cut(s) | 23, 206, 512, 658, 991, 1051 |
| Hpy8I | GTNNAC | 4 cut(s) | 278, 415, 814, 881 |
| Hpy99I | CGWCG | 4 cut(s) | 68, 282, 368, 815 |
| HpyAV | CCTTC | 6 cut(s) | 238, 439, 778, 937, 1193, 1213 |
| HpyCH4III | ACNGT | 4 cut(s) | 364, 395, 441, 1210 |
| HpyCH4IV | ACGT | 3 cut(s) | 63, 1168, 1278 |
| HpyCH4V | TGCA | 3 cut(s) | 1115, 1342, 1351 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 25, 34, 43, 111, 315, 1135, 1348 |
| HpyF3I | CTNAG | 8 cut(s) | 94, 219, 290, 494, 609, 937, 1029, 1083 |
| HpySE526I | ACGT | 3 cut(s) | 63, 1168, 1278 |
| Hsp92I | GRCGYC | 3 cut(s) | 297, 667, 1310 |
| Hsp92II | CATG | 7 cut(s) | 703, 868, 1021, 1040, 1234, 1244, 1252 |
| HspAI | GCGC | 3 cut(s) | 51, 734, 1310 |
| KasI | GGCGCC | 1 cut(s) | 1309 |
| Kzo9I | GATC | 7 cut(s) | 73, 202, 208, 232, 346, 579, 987 |
| LmnI | GCTCC | 6 cut(s) | 25, 535, 795, 1135, 1267, 1275 |
| Lsp1109I | GCAGC | 1 cut(s) | 236 |
| LweI | GCATC | 4 cut(s) | 24, 488, 703, 1318 |
| MaeI | CTAG | 5 cut(s) | 242, 324, 717, 737, 1322 |
| MaeII | ACGT | 3 cut(s) | 63, 1168, 1278 |
| MaeIII | GTNAC | 3 cut(s) | 358, 383, 544 |
| MalI | GATC | 7 cut(s) | 75, 204, 210, 234, 348, 581, 989 |
| MbiI | CCGCTC | 1 cut(s) | 1138 |
| MboI | GATC | 7 cut(s) | 73, 202, 208, 232, 346, 579, 987 |
| MboII | GAAGA | 3 cut(s) | 752, 913, 1066 |
| MfeI | CAATTG | 2 cut(s) | 689, 906 |
| MflI | RGATCY | 3 cut(s) | 202, 346, 579 |
| MhlI | GDGCHC | 3 cut(s) | 381, 975, 1272 |
| Mly113I | GGCGCC | 1 cut(s) | 1310 |
| MlyI | GAGTC | 2 cut(s) | 509, 1295 |
| MmeI | TCCRAC | 3 cut(s) | 180, 978, 1057 |
| MroXI | GAANNNNTTC | 1 cut(s) | 917 |
| MseI | TTAA | 4 cut(s) | 819, 1011, 1152, 1360 |
| MslI | CAYNNNNRTG | 3 cut(s) | 659, 863, 1049 |
| MspI | CCGG | 5 cut(s) | 196, 310, 331, 350, 471 |
| MspR9I | CCNGG | 6 cut(s) | 111, 306, 311, 351, 761, 1274 |
| MunI | CAATTG | 2 cut(s) | 689, 906 |
| MvaI | CCWGG | 4 cut(s) | 111, 306, 761, 1274 |
| MvnI | CGCG | 1 cut(s) | 53 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 25, 34, 43, 111, 315, 1135, 1348 |
| NarI | GGCGCC | 1 cut(s) | 1310 |
| NciI | CCSGG | 2 cut(s) | 311, 351 |
| NcoI | CCATGG | 1 cut(s) | 1248 |
| NdeI | CATATG | 2 cut(s) | 627, 672 |
| NdeII | GATC | 7 cut(s) | 73, 202, 208, 232, 346, 579, 987 |
| NlaIII | CATG | 7 cut(s) | 703, 868, 1021, 1040, 1234, 1244, 1252 |
| NmuCI | GTSAC | 3 cut(s) | 358, 383, 544 |
| PdmI | GAANNNNTTC | 1 cut(s) | 917 |
| PfeI | GAWTC | 5 cut(s) | 145, 535, 764, 807, 873 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 187, 1279 |
| PfoI | TCCNGGA | 2 cut(s) | 759, 1272 |
| PinAI | ACCGGT | 1 cut(s) | 195 |
| PkrI | GCNGC | 4 cut(s) | 60, 226, 425, 456 |
| Ple19I | CGATCG | 1 cut(s) | 211 |
| PleI | GAGTC | 2 cut(s) | 509, 1294 |
| PluTI | GGCGCC | 1 cut(s) | 1313 |
| PpsI | GAGTC | 2 cut(s) | 509, 1294 |
| PshBI | ATTAAT | 1 cut(s) | 1011 |
| PsiI | TTATAA | 3 cut(s) | 1062, 1095, 1107 |
| Psp124BI | GAGCTC | 1 cut(s) | 1272 |
| Psp6I | CCWGG | 4 cut(s) | 109, 304, 759, 1272 |
| PspEI | GGTNACC | 1 cut(s) | 358 |
| PspFI | CCCAGC | 1 cut(s) | 15 |
| PspGI | CCWGG | 4 cut(s) | 109, 304, 759, 1272 |
| PspOMI | GGGCCC | 1 cut(s) | 377 |
| PspPI | GGNCC | 5 cut(s) | 377, 378, 1071, 1175, 1260 |
| PsuI | RGATCY | 3 cut(s) | 202, 346, 579 |
| PvuI | CGATCG | 1 cut(s) | 211 |
| RsaI | GTAC | 3 cut(s) | 152, 214, 443 |
| RsaNI | GTAC | 3 cut(s) | 151, 213, 442 |
| RseI | CAYNNNNRTG | 3 cut(s) | 659, 863, 1049 |
| SacI | GAGCTC | 1 cut(s) | 1272 |
| SalI | GTCGAC | 2 cut(s) | 276, 812 |
| SaqAI | TTAA | 4 cut(s) | 819, 1011, 1152, 1360 |
| SatI | GCNGC | 4 cut(s) | 59, 225, 424, 455 |
| Sau3AI | GATC | 7 cut(s) | 73, 202, 208, 232, 346, 579, 987 |
| Sau96I | GGNCC | 5 cut(s) | 377, 378, 1071, 1175, 1260 |
| SchI | GAGTC | 2 cut(s) | 509, 1295 |
| ScrFI | CCNGG | 6 cut(s) | 111, 306, 311, 351, 761, 1274 |
| SduI | GDGCHC | 3 cut(s) | 381, 975, 1272 |
| SfaNI | GCATC | 4 cut(s) | 24, 488, 703, 1318 |
| SfcI | CTRYAG | 1 cut(s) | 1023 |
| SfoI | GGCGCC | 1 cut(s) | 1311 |
| SinI | GGWCC | 1 cut(s) | 1175 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 659, 863, 1049 |
| SmlI | CTYRAG | 1 cut(s) | 517 |
| SmoI | CTYRAG | 1 cut(s) | 517 |
| SspDI | GGCGCC | 1 cut(s) | 1309 |
| SspMI | CTAG | 5 cut(s) | 242, 324, 717, 737, 1322 |
| SstI | GAGCTC | 1 cut(s) | 1272 |
| StyD4I | CCNGG | 6 cut(s) | 109, 304, 309, 349, 759, 1272 |
| StyI | CCWWGG | 3 cut(s) | 88, 1248, 1293 |
| TaaI | ACNGT | 4 cut(s) | 364, 395, 441, 1210 |
| TaiI | ACGT | 3 cut(s) | 66, 1171, 1281 |
| TaqI | TCGA | 3 cut(s) | 231, 277, 813 |
| TatI | WGTACW | 1 cut(s) | 441 |
| TauI | GCSGC | 3 cut(s) | 61, 426, 457 |
| TfiI | GAWTC | 5 cut(s) | 145, 535, 764, 807, 873 |
| Tru1I | TTAA | 4 cut(s) | 819, 1011, 1152, 1360 |
| Tru9I | TTAA | 4 cut(s) | 819, 1011, 1152, 1360 |
| TscAI | CASTG | 4 cut(s) | 277, 409, 425, 444 |
| TseFI | GTSAC | 3 cut(s) | 358, 383, 544 |
| TseI | GCWGC | 1 cut(s) | 224 |
| Tsp45I | GTSAC | 3 cut(s) | 358, 383, 544 |
| TspDTI | ATGAA | 2 cut(s) | 989, 1232 |
| TspGWI | ACGGA | 6 cut(s) | 112, 185, 353, 814, 1179, 1239 |
| TspRI | CASTG | 4 cut(s) | 277, 409, 425, 444 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 187, 1279 |
| VpaK11BI | GGWCC | 1 cut(s) | 1175 |
| VspI | ATTAAT | 1 cut(s) | 1011 |
| XmiI | GTMKAC | 2 cut(s) | 277, 813 |
| XmnI | GAANNNNTTC | 1 cut(s) | 917 |
| XspI | CTAG | 5 cut(s) | 242, 324, 717, 737, 1322 |