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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 411 |
| AccII | CGCG | 2 cut(s) | 218, 375 |
| AciI | CCGC | 4 cut(s) | 218, 340, 373, 390 |
| AclI | AACGTT | 1 cut(s) | 291 |
| AcsI | RAATTY | 1 cut(s) | 102 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 64, 241, 379, 434 |
| AflII | CTTAAG | 1 cut(s) | 89 |
| AgsI | TTSAA | 3 cut(s) | 167, 355, 496 |
| AjnI | CCWGG | 1 cut(s) | 124 |
| AluBI | AGCT | 5 cut(s) | 24, 155, 179, 259, 424 |
| AluI | AGCT | 5 cut(s) | 24, 155, 179, 259, 424 |
| Alw21I | GWGCWC | 1 cut(s) | 141 |
| Alw26I | GTCTC | 2 cut(s) | 32, 543 |
| Ama87I | CYCGRG | 1 cut(s) | 35 |
| AoxI | GGCC | 2 cut(s) | 368, 465 |
| ApaI | GGGCCC | 1 cut(s) | 372 |
| ApeKI | GCWGC | 1 cut(s) | 277 |
| ApoI | RAATTY | 1 cut(s) | 102 |
| AspLEI | GCGC | 2 cut(s) | 50, 81 |
| AspS9I | GGNCC | 4 cut(s) | 67, 220, 368, 369 |
| AsuC2I | CCSGG | 1 cut(s) | 461 |
| AvaI | CYCGRG | 1 cut(s) | 35 |
| AvaII | GGWCC | 2 cut(s) | 67, 220 |
| BaeGI | GKGCMC | 1 cut(s) | 372 |
| BanII | GRGCYC | 1 cut(s) | 372 |
| BbsI | GAAGAC | 1 cut(s) | 252 |
| Bbv12I | GWGCWC | 1 cut(s) | 141 |
| BbvI | GCAGC | 1 cut(s) | 289 |
| BccI | CCATC | 3 cut(s) | 92, 122, 539 |
| BciT130I | CCWGG | 1 cut(s) | 126 |
| BciVI | GTATCC | 1 cut(s) | 47 |
| BcnI | CCSGG | 1 cut(s) | 461 |
| BcoDI | GTCTC | 2 cut(s) | 32, 543 |
| BfaI | CTAG | 2 cut(s) | 456, 542 |
| BfmI | CTRYAG | 1 cut(s) | 408 |
| BfrI | CTTAAG | 1 cut(s) | 89 |
| BfuI | GTATCC | 1 cut(s) | 47 |
| BisI | GCNGC | 1 cut(s) | 278 |
| BlsI | GCNGC | 1 cut(s) | 279 |
| Bme1390I | CCNGG | 2 cut(s) | 126, 461 |
| Bme18I | GGWCC | 2 cut(s) | 67, 220 |
| BmeT110I | CYCGRG | 1 cut(s) | 35 |
| BmgT120I | GGNCC | 4 cut(s) | 67, 220, 368, 369 |
| BmiI | GGNNCC | 3 cut(s) | 68, 370, 371 |
| BmrFI | CCNGG | 2 cut(s) | 126, 461 |
| BpiI | GAAGAC | 1 cut(s) | 252 |
| BpuEI | CTTGAG | 1 cut(s) | 293 |
| BpuMI | CCSGG | 1 cut(s) | 461 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 64, 241, 379, 434 |
| Bse1I | ACTGG | 1 cut(s) | 49 |
| BseBI | CCWGG | 1 cut(s) | 126 |
| BseGI | GGATG | 1 cut(s) | 114 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 64, 241, 379, 434 |
| BseNI | ACTGG | 1 cut(s) | 49 |
| BseSI | GKGCMC | 1 cut(s) | 372 |
| BseXI | GCAGC | 1 cut(s) | 289 |
| Bsh1236I | CGCG | 2 cut(s) | 218, 375 |
| BshFI | GGCC | 2 cut(s) | 370, 467 |
| BsiHKAI | GWGCWC | 1 cut(s) | 141 |
| BsiHKCI | CYCGRG | 1 cut(s) | 35 |
| BsiSI | CCGG | 1 cut(s) | 460 |
| BslFI | GGGAC | 2 cut(s) | 14, 506 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 64, 241, 379, 434 |
| BsmAI | GTCTC | 2 cut(s) | 32, 543 |
| BsmFI | GGGAC | 2 cut(s) | 14, 506 |
| BsnI | GGCC | 2 cut(s) | 370, 467 |
| BsoBI | CYCGRG | 1 cut(s) | 35 |
| Bsp120I | GGGCCC | 1 cut(s) | 368 |
| Bsp1286I | GDGCHC | 2 cut(s) | 141, 372 |
| BspACI | CCGC | 4 cut(s) | 218, 340, 373, 390 |
| BspANI | GGCC | 2 cut(s) | 370, 467 |
| BspFNI | CGCG | 2 cut(s) | 218, 375 |
| BspHI | TCATGA | 1 cut(s) | 195 |
| BspLI | GGNNCC | 3 cut(s) | 68, 370, 371 |
| BspTI | CTTAAG | 1 cut(s) | 89 |
| BsrI | ACTGG | 1 cut(s) | 49 |
| Bst2UI | CCWGG | 1 cut(s) | 126 |
| BstAFI | CTTAAG | 1 cut(s) | 89 |
| BstC8I | GCNNGC | 1 cut(s) | 153 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 239 |
| BstF5I | GGATG | 1 cut(s) | 114 |
| BstFNI | CGCG | 2 cut(s) | 218, 375 |
| BstHHI | GCGC | 2 cut(s) | 50, 81 |
| BstMAI | GTCTC | 2 cut(s) | 32, 543 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 167, 176 |
| BstNI | CCWGG | 1 cut(s) | 126 |
| BstNSI | RCATGY | 1 cut(s) | 403 |
| BstSCI | CCNGG | 2 cut(s) | 124, 459 |
| BstSFI | CTRYAG | 1 cut(s) | 408 |
| BstSLI | GKGCMC | 1 cut(s) | 372 |
| BstUI | CGCG | 2 cut(s) | 218, 375 |
| BstV1I | GCAGC | 1 cut(s) | 289 |
| BstV2I | GAAGAC | 1 cut(s) | 252 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 125 |
| BsuI | GTATCC | 1 cut(s) | 47 |
| BsuRI | GGCC | 2 cut(s) | 370, 467 |
| BtgZI | GCGATG | 1 cut(s) | 340 |
| BtsCI | GGATG | 1 cut(s) | 114 |
| Cac8I | GCNNGC | 1 cut(s) | 153 |
| CciI | TCATGA | 1 cut(s) | 195 |
| CfoI | GCGC | 2 cut(s) | 50, 81 |
| Cfr13I | GGNCC | 4 cut(s) | 67, 220, 368, 369 |
| CseI | GACGC | 1 cut(s) | 224 |
| CviAII | CATG | 5 cut(s) | 196, 208, 379, 400, 477 |
| Eco24I | GRGCYC | 1 cut(s) | 372 |
| Eco32I | GATATC | 1 cut(s) | 453 |
| Eco47I | GGWCC | 2 cut(s) | 67, 220 |
| Eco88I | CYCGRG | 1 cut(s) | 35 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 239 |
| EcoO109I | RGGNCCY | 1 cut(s) | 369 |
| EcoRI | GAATTC | 1 cut(s) | 102 |
| EcoRII | CCWGG | 1 cut(s) | 124 |
| EcoRV | GATATC | 1 cut(s) | 453 |
| EcoT38I | GRGCYC | 1 cut(s) | 372 |
| FaeI | CATG | 5 cut(s) | 199, 211, 382, 403, 480 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 8, 40 |
| FaqI | GGGAC | 2 cut(s) | 14, 506 |
| FatI | CATG | 5 cut(s) | 195, 207, 378, 399, 476 |
| FauI | CCCGC | 2 cut(s) | 380, 397 |
| FblI | GTMKAC | 1 cut(s) | 411 |
| Fnu4HI | GCNGC | 1 cut(s) | 278 |
| FokI | GGATG | 1 cut(s) | 101 |
| FriOI | GRGCYC | 1 cut(s) | 372 |
| Fsp4HI | GCNGC | 1 cut(s) | 278 |
| FspBI | CTAG | 2 cut(s) | 456, 542 |
| GlaI | GCGC | 2 cut(s) | 49, 80 |
| GluI | GCNGC | 1 cut(s) | 278 |
| HaeIII | GGCC | 2 cut(s) | 370, 467 |
| HapII | CCGG | 1 cut(s) | 460 |
| HgaI | GACGC | 1 cut(s) | 224 |
| HhaI | GCGC | 2 cut(s) | 50, 81 |
| Hin1II | CATG | 5 cut(s) | 199, 211, 382, 403, 480 |
| Hin6I | GCGC | 2 cut(s) | 48, 79 |
| HinP1I | GCGC | 2 cut(s) | 48, 79 |
| HinfI | GANTC | 1 cut(s) | 299 |
| HpaII | CCGG | 1 cut(s) | 460 |
| Hpy166II | GTNNAC | 2 cut(s) | 412, 539 |
| Hpy188I | TCNGA | 3 cut(s) | 71, 132, 531 |
| Hpy188III | TCNNGA | 6 cut(s) | 37, 107, 196, 296, 311, 496 |
| Hpy8I | GTNNAC | 2 cut(s) | 412, 539 |
| HpyAV | CCTTC | 1 cut(s) | 502 |
| HpyCH4IV | ACGT | 2 cut(s) | 135, 291 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 167, 176 |
| HpySE526I | ACGT | 2 cut(s) | 135, 291 |
| Hsp92II | CATG | 5 cut(s) | 199, 211, 382, 403, 480 |
| HspAI | GCGC | 2 cut(s) | 48, 79 |
| Lsp1109I | GCAGC | 1 cut(s) | 289 |
| MaeI | CTAG | 2 cut(s) | 456, 542 |
| MaeII | ACGT | 2 cut(s) | 135, 291 |
| MaeIII | GTNAC | 2 cut(s) | 5, 296 |
| MboII | GAAGA | 1 cut(s) | 257 |
| MfeI | CAATTG | 1 cut(s) | 144 |
| MhlI | GDGCHC | 2 cut(s) | 141, 372 |
| MluCI | AATT | 3 cut(s) | 102, 144, 189 |
| MlyI | GAGTC | 1 cut(s) | 293 |
| MnlI | CCTC | 8 cut(s) | 235, 245, 347, 414, 434, 438, 457, 482 |
| MseI | TTAA | 1 cut(s) | 90 |
| MslI | CAYNNNNRTG | 1 cut(s) | 210 |
| MspCI | CTTAAG | 1 cut(s) | 89 |
| MspI | CCGG | 1 cut(s) | 460 |
| MspR9I | CCNGG | 2 cut(s) | 126, 461 |
| MunI | CAATTG | 1 cut(s) | 144 |
| MvaI | CCWGG | 1 cut(s) | 126 |
| MvnI | CGCG | 2 cut(s) | 218, 375 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 167, 176 |
| NciI | CCSGG | 1 cut(s) | 461 |
| NlaIII | CATG | 5 cut(s) | 199, 211, 382, 403, 480 |
| NlaIV | GGNNCC | 3 cut(s) | 68, 370, 371 |
| NmuCI | GTSAC | 1 cut(s) | 296 |
| NspI | RCATGY | 1 cut(s) | 403 |
| PaeR7I | CTCGAG | 1 cut(s) | 35 |
| PagI | TCATGA | 1 cut(s) | 195 |
| PflFI | GACNNNGTC | 1 cut(s) | 218 |
| PkrI | GCNGC | 1 cut(s) | 279 |
| PleI | GAGTC | 1 cut(s) | 293 |
| PpsI | GAGTC | 1 cut(s) | 293 |
| Psp1406I | AACGTT | 1 cut(s) | 291 |
| Psp6I | CCWGG | 1 cut(s) | 124 |
| PspGI | CCWGG | 1 cut(s) | 124 |
| PspN4I | GGNNCC | 3 cut(s) | 68, 370, 371 |
| PspOMI | GGGCCC | 1 cut(s) | 368 |
| PspPI | GGNCC | 4 cut(s) | 67, 220, 368, 369 |
| PsyI | GACNNNGTC | 1 cut(s) | 218 |
| RseI | CAYNNNNRTG | 1 cut(s) | 210 |
| SaqAI | TTAA | 1 cut(s) | 90 |
| SatI | GCNGC | 1 cut(s) | 278 |
| Sau96I | GGNCC | 4 cut(s) | 67, 220, 368, 369 |
| SchI | GAGTC | 1 cut(s) | 293 |
| ScrFI | CCNGG | 2 cut(s) | 126, 461 |
| SduI | GDGCHC | 2 cut(s) | 141, 372 |
| SfcI | CTRYAG | 1 cut(s) | 408 |
| Sfr274I | CTCGAG | 1 cut(s) | 35 |
| SinI | GGWCC | 2 cut(s) | 67, 220 |
| SlaI | CTCGAG | 1 cut(s) | 35 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 210 |
| SmlI | CTYRAG | 3 cut(s) | 35, 89, 272 |
| SmoI | CTYRAG | 3 cut(s) | 35, 89, 272 |
| Sse9I | AATT | 3 cut(s) | 102, 144, 189 |
| SsiI | CCGC | 4 cut(s) | 218, 340, 373, 390 |
| SspMI | CTAG | 2 cut(s) | 456, 542 |
| StyD4I | CCNGG | 2 cut(s) | 124, 459 |
| TaiI | ACGT | 2 cut(s) | 138, 294 |
| TaqI | TCGA | 1 cut(s) | 36 |
| TasI | AATT | 3 cut(s) | 102, 144, 189 |
| Tru1I | TTAA | 1 cut(s) | 90 |
| Tru9I | TTAA | 1 cut(s) | 90 |
| TseFI | GTSAC | 1 cut(s) | 296 |
| TseI | GCWGC | 1 cut(s) | 277 |
| Tsp45I | GTSAC | 1 cut(s) | 296 |
| TspDTI | ATGAA | 2 cut(s) | 224, 243 |
| Tth111I | GACNNNGTC | 1 cut(s) | 218 |
| Vha464I | CTTAAG | 1 cut(s) | 89 |
| VpaK11BI | GGWCC | 2 cut(s) | 67, 220 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 239 |
| XapI | RAATTY | 1 cut(s) | 102 |
| XceI | RCATGY | 1 cut(s) | 403 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 258 |
| XhoI | CTCGAG | 1 cut(s) | 35 |
| XmiI | GTMKAC | 1 cut(s) | 411 |
| XspI | CTAG | 2 cut(s) | 456, 542 |