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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 363, 408 |
| Acc65I | GGTACC | 1 cut(s) | 438 |
| AccB1I | GGYRCC | 2 cut(s) | 438, 605 |
| AccBSI | CCGCTC | 1 cut(s) | 436 |
| AciI | CCGC | 5 cut(s) | 436, 484, 505, 629, 670 |
| AclWI | GGATC | 2 cut(s) | 296, 703 |
| AcuI | CTGAAG | 2 cut(s) | 291, 870 |
| AcvI | CACGTG | 2 cut(s) | 527, 545 |
| AdeI | CACNNNGTG | 2 cut(s) | 530, 644 |
| AfaI | GTAC | 3 cut(s) | 268, 440, 788 |
| AfeI | AGCGCT | 2 cut(s) | 36, 47 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 422, 423, 449, 493, 546, 619 |
| AflIII | ACRYGT | 2 cut(s) | 524, 542 |
| AgsI | TTSAA | 6 cut(s) | 85, 92, 121, 369, 715, 844 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 121, 188 |
| AjnI | CCWGG | 1 cut(s) | 492 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 33, 65 |
| AluBI | AGCT | 6 cut(s) | 25, 205, 307, 329, 743, 848 |
| AluI | AGCT | 6 cut(s) | 25, 205, 307, 329, 743, 848 |
| Alw21I | GWGCWC | 3 cut(s) | 640, 649, 864 |
| Alw44I | GTGCAC | 3 cut(s) | 636, 645, 860 |
| AlwI | GGATC | 2 cut(s) | 296, 703 |
| Aor51HI | AGCGCT | 2 cut(s) | 36, 47 |
| AoxI | GGCC | 2 cut(s) | 371, 472 |
| ApaLI | GTGCAC | 3 cut(s) | 636, 645, 860 |
| AseI | ATTAAT | 1 cut(s) | 312 |
| Asp718I | GGTACC | 1 cut(s) | 438 |
| AspA2I | CCTAGG | 1 cut(s) | 617 |
| AspLEI | GCGC | 4 cut(s) | 37, 48, 108, 429 |
| AspS9I | GGNCC | 3 cut(s) | 372, 473, 766 |
| AsuHPI | GGTGA | 1 cut(s) | 820 |
| AvaII | GGWCC | 1 cut(s) | 766 |
| AvrII | CCTAGG | 1 cut(s) | 617 |
| BaeGI | GKGCMC | 3 cut(s) | 640, 649, 864 |
| BanI | GGYRCC | 2 cut(s) | 438, 605 |
| BauI | CACGAG | 2 cut(s) | 292, 350 |
| BbrPI | CACGTG | 2 cut(s) | 527, 545 |
| Bbv12I | GWGCWC | 3 cut(s) | 640, 649, 864 |
| BccI | CCATC | 2 cut(s) | 309, 803 |
| BceAI | ACGGC | 1 cut(s) | 558 |
| BciT130I | CCWGG | 1 cut(s) | 494 |
| BciVI | GTATCC | 2 cut(s) | 514, 575 |
| BfaI | CTAG | 4 cut(s) | 38, 570, 618, 740 |
| BfmI | CTRYAG | 1 cut(s) | 324 |
| BfoI | RGCGCY | 2 cut(s) | 38, 49 |
| BfuI | GTATCC | 2 cut(s) | 514, 575 |
| BlnI | CCTAGG | 1 cut(s) | 617 |
| Bme1390I | CCNGG | 1 cut(s) | 494 |
| Bme18I | GGWCC | 1 cut(s) | 766 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 121, 188 |
| BmgT120I | GGNCC | 3 cut(s) | 372, 473, 766 |
| BmiI | GGNNCC | 4 cut(s) | 299, 440, 607, 767 |
| BmrFI | CCNGG | 1 cut(s) | 494 |
| BmsI | GCATC | 2 cut(s) | 4, 859 |
| Bsa29I | ATCGAT | 1 cut(s) | 688 |
| BsaAI | YACGTR | 2 cut(s) | 527, 545 |
| BsaBI | GATNNNNATC | 2 cut(s) | 694, 822 |
| BsaJI | CCNNGG | 1 cut(s) | 617 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 541, 571, 598, 628 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 422, 423, 449, 493, 546, 619 |
| Bse3DI | GCAATG | 4 cut(s) | 61, 638, 679, 725 |
| Bse8I | GATNNNNATC | 2 cut(s) | 694, 822 |
| BseBI | CCWGG | 1 cut(s) | 494 |
| BseCI | ATCGAT | 1 cut(s) | 688 |
| BseDI | CCNNGG | 1 cut(s) | 617 |
| BseGI | GGATG | 2 cut(s) | 19, 874 |
| BseJI | GATNNNNATC | 2 cut(s) | 694, 822 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 422, 423, 449, 493, 546, 619 |
| BseMI | GCAATG | 4 cut(s) | 61, 638, 679, 725 |
| BseMII | CTCAG | 2 cut(s) | 321, 761 |
| BseRI | GAGGAG | 1 cut(s) | 62 |
| BseSI | GKGCMC | 3 cut(s) | 640, 649, 864 |
| BshFI | GGCC | 2 cut(s) | 373, 474 |
| BshNI | GGYRCC | 2 cut(s) | 438, 605 |
| BshVI | ATCGAT | 1 cut(s) | 688 |
| BsiHKAI | GWGCWC | 3 cut(s) | 640, 649, 864 |
| BslFI | GGGAC | 3 cut(s) | 468, 477, 779 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 422, 423, 449, 493, 546, 619 |
| BsmFI | GGGAC | 3 cut(s) | 468, 477, 779 |
| BsnI | GGCC | 2 cut(s) | 373, 474 |
| Bsp1286I | GDGCHC | 3 cut(s) | 640, 649, 864 |
| Bsp143I | GATC | 3 cut(s) | 6, 288, 695 |
| BspACI | CCGC | 5 cut(s) | 436, 484, 505, 629, 670 |
| BspANI | GGCC | 2 cut(s) | 373, 474 |
| BspCNI | CTCAG | 2 cut(s) | 322, 762 |
| BspDI | ATCGAT | 1 cut(s) | 688 |
| BspHI | TCATGA | 1 cut(s) | 394 |
| BspLI | GGNNCC | 4 cut(s) | 299, 440, 607, 767 |
| BspPI | GGATC | 2 cut(s) | 296, 703 |
| BspQI | GCTCTTC | 2 cut(s) | 36, 156 |
| BspT107I | GGYRCC | 2 cut(s) | 438, 605 |
| BsrBI | CCGCTC | 1 cut(s) | 436 |
| BsrDI | GCAATG | 4 cut(s) | 61, 638, 679, 725 |
| BssECI | CCNNGG | 1 cut(s) | 617 |
| BssMI | GATC | 3 cut(s) | 6, 288, 695 |
| BssSI | CACGAG | 2 cut(s) | 292, 350 |
| BssT1I | CCWWGG | 1 cut(s) | 617 |
| Bst2BI | CACGAG | 2 cut(s) | 292, 350 |
| Bst2UI | CCWGG | 1 cut(s) | 494 |
| Bst4CI | ACNGT | 1 cut(s) | 266 |
| Bst6I | CTCTTC | 2 cut(s) | 36, 156 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 644 |
| BstBAI | YACGTR | 2 cut(s) | 527, 545 |
| BstC8I | GCNNGC | 1 cut(s) | 629 |
| BstDEI | CTNAG | 4 cut(s) | 330, 384, 444, 770 |
| BstF5I | GGATG | 2 cut(s) | 19, 874 |
| BstH2I | RGCGCY | 2 cut(s) | 38, 49 |
| BstHHI | GCGC | 4 cut(s) | 37, 48, 108, 429 |
| BstKTI | GATC | 3 cut(s) | 9, 291, 698 |
| BstMBI | GATC | 3 cut(s) | 6, 288, 695 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 43, 433, 644 |
| BstNI | CCWGG | 1 cut(s) | 494 |
| BstSCI | CCNGG | 1 cut(s) | 492 |
| BstSFI | CTRYAG | 1 cut(s) | 324 |
| BstSLI | GKGCMC | 3 cut(s) | 640, 649, 864 |
| Bsu15I | ATCGAT | 1 cut(s) | 688 |
| BsuI | GTATCC | 2 cut(s) | 514, 575 |
| BsuRI | GGCC | 2 cut(s) | 373, 474 |
| BsuTUI | ATCGAT | 1 cut(s) | 688 |
| BtsCI | GGATG | 2 cut(s) | 19, 874 |
| Cac8I | GCNNGC | 1 cut(s) | 629 |
| CciI | TCATGA | 1 cut(s) | 394 |
| CfoI | GCGC | 4 cut(s) | 37, 48, 108, 429 |
| Cfr13I | GGNCC | 3 cut(s) | 372, 473, 766 |
| ClaI | ATCGAT | 1 cut(s) | 688 |
| Csp6I | GTAC | 3 cut(s) | 267, 439, 787 |
| CviAII | CATG | 5 cut(s) | 166, 338, 395, 458, 865 |
| CviQI | GTAC | 3 cut(s) | 267, 439, 787 |
| DdeI | CTNAG | 4 cut(s) | 330, 384, 444, 770 |
| DpnI | GATC | 3 cut(s) | 8, 290, 697 |
| DpnII | GATC | 3 cut(s) | 6, 288, 695 |
| DraIII | CACNNNGTG | 2 cut(s) | 530, 644 |
| DriI | GACNNNNNGTC | 2 cut(s) | 121, 188 |
| Eam1104I | CTCTTC | 2 cut(s) | 36, 156 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 121, 188 |
| EarI | CTCTTC | 2 cut(s) | 36, 156 |
| Eco130I | CCWWGG | 1 cut(s) | 617 |
| Eco47I | GGWCC | 1 cut(s) | 766 |
| Eco47III | AGCGCT | 2 cut(s) | 36, 47 |
| Eco57I | CTGAAG | 2 cut(s) | 291, 870 |
| Eco72I | CACGTG | 2 cut(s) | 527, 545 |
| EcoO109I | RGGNCCY | 1 cut(s) | 766 |
| EcoRII | CCWGG | 1 cut(s) | 492 |
| EcoT14I | CCWWGG | 1 cut(s) | 617 |
| ErhI | CCWWGG | 1 cut(s) | 617 |
| FaeI | CATG | 5 cut(s) | 169, 341, 398, 461, 868 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 774, 806 |
| FaqI | GGGAC | 3 cut(s) | 468, 477, 779 |
| FatI | CATG | 5 cut(s) | 165, 337, 394, 457, 864 |
| FauI | CCCGC | 1 cut(s) | 636 |
| FokI | GGATG | 2 cut(s) | 26, 881 |
| FspBI | CTAG | 4 cut(s) | 38, 570, 618, 740 |
| GlaI | GCGC | 4 cut(s) | 36, 47, 107, 428 |
| HaeII | RGCGCY | 2 cut(s) | 38, 49 |
| HaeIII | GGCC | 2 cut(s) | 373, 474 |
| HhaI | GCGC | 4 cut(s) | 37, 48, 108, 429 |
| Hin1II | CATG | 5 cut(s) | 169, 341, 398, 461, 868 |
| Hin6I | GCGC | 4 cut(s) | 35, 46, 106, 427 |
| HinP1I | GCGC | 4 cut(s) | 35, 46, 106, 427 |
| HinfI | GANTC | 2 cut(s) | 65, 174 |
| HphI | GGTGA | 1 cut(s) | 820 |
| Hpy166II | GTNNAC | 5 cut(s) | 182, 638, 647, 787, 862 |
| Hpy188I | TCNGA | 1 cut(s) | 145 |
| Hpy188III | TCNNGA | 3 cut(s) | 292, 352, 395 |
| Hpy8I | GTNNAC | 5 cut(s) | 182, 638, 647, 787, 862 |
| HpyAV | CCTTC | 3 cut(s) | 79, 238, 491 |
| HpyCH4III | ACNGT | 1 cut(s) | 266 |
| HpyCH4IV | ACGT | 4 cut(s) | 466, 526, 544, 643 |
| HpyCH4V | TGCA | 8 cut(s) | 17, 413, 638, 647, 723, 794, 862, 872 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 43, 433, 644 |
| HpyF3I | CTNAG | 4 cut(s) | 330, 384, 444, 770 |
| HpySE526I | ACGT | 4 cut(s) | 466, 526, 544, 643 |
| Hsp92II | CATG | 5 cut(s) | 169, 341, 398, 461, 868 |
| HspAI | GCGC | 4 cut(s) | 35, 46, 106, 427 |
| KpnI | GGTACC | 1 cut(s) | 442 |
| Kzo9I | GATC | 3 cut(s) | 6, 288, 695 |
| LguI | GCTCTTC | 2 cut(s) | 36, 156 |
| LmnI | GCTCC | 1 cut(s) | 433 |
| LpnPI | CCDG | 7 cut(s) | 90, 201, 267, 479, 506, 739, 782 |
| LweI | GCATC | 2 cut(s) | 4, 859 |
| MaeI | CTAG | 4 cut(s) | 38, 570, 618, 740 |
| MaeII | ACGT | 4 cut(s) | 466, 526, 544, 643 |
| MaeIII | GTNAC | 1 cut(s) | 190 |
| MalI | GATC | 3 cut(s) | 8, 290, 697 |
| MbiI | CCGCTC | 1 cut(s) | 436 |
| MboI | GATC | 3 cut(s) | 6, 288, 695 |
| MboII | GAAGA | 6 cut(s) | 53, 143, 812, 815, 818, 863 |
| MfeI | CAATTG | 1 cut(s) | 699 |
| MhlI | GDGCHC | 3 cut(s) | 640, 649, 864 |
| MluCI | AATT | 7 cut(s) | 139, 207, 358, 364, 403, 653, 699 |
| MseI | TTAA | 2 cut(s) | 312, 656 |
| MslI | CAYNNNNRTG | 3 cut(s) | 350, 690, 867 |
| MspR9I | CCNGG | 1 cut(s) | 494 |
| MunI | CAATTG | 1 cut(s) | 699 |
| MvaI | CCWGG | 1 cut(s) | 494 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 43, 433, 644 |
| NdeII | GATC | 3 cut(s) | 6, 288, 695 |
| NlaIII | CATG | 5 cut(s) | 169, 341, 398, 461, 868 |
| NlaIV | GGNNCC | 4 cut(s) | 299, 440, 607, 767 |
| NmuCI | GTSAC | 1 cut(s) | 190 |
| PagI | TCATGA | 1 cut(s) | 394 |
| PciSI | GCTCTTC | 2 cut(s) | 36, 156 |
| PfeI | GAWTC | 2 cut(s) | 65, 174 |
| PmaCI | CACGTG | 2 cut(s) | 527, 545 |
| PmlI | CACGTG | 2 cut(s) | 527, 545 |
| Ppu21I | YACGTR | 2 cut(s) | 527, 545 |
| PpuMI | RGGWCCY | 1 cut(s) | 766 |
| PshBI | ATTAAT | 1 cut(s) | 312 |
| PsiI | TTATAA | 2 cut(s) | 363, 408 |
| Psp5II | RGGWCCY | 1 cut(s) | 766 |
| Psp6I | CCWGG | 1 cut(s) | 492 |
| PspCI | CACGTG | 2 cut(s) | 527, 545 |
| PspGI | CCWGG | 1 cut(s) | 492 |
| PspN4I | GGNNCC | 4 cut(s) | 299, 440, 607, 767 |
| PspPI | GGNCC | 3 cut(s) | 372, 473, 766 |
| PspPPI | RGGWCCY | 1 cut(s) | 766 |
| RsaI | GTAC | 3 cut(s) | 268, 440, 788 |
| RsaNI | GTAC | 3 cut(s) | 267, 439, 787 |
| RseI | CAYNNNNRTG | 3 cut(s) | 350, 690, 867 |
| SapI | GCTCTTC | 2 cut(s) | 36, 156 |
| SaqAI | TTAA | 2 cut(s) | 312, 656 |
| Sau3AI | GATC | 3 cut(s) | 6, 288, 695 |
| Sau96I | GGNCC | 3 cut(s) | 372, 473, 766 |
| ScrFI | CCNGG | 1 cut(s) | 494 |
| SduI | GDGCHC | 3 cut(s) | 640, 649, 864 |
| SfaNI | GCATC | 2 cut(s) | 4, 859 |
| SfcI | CTRYAG | 1 cut(s) | 324 |
| SinI | GGWCC | 1 cut(s) | 766 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 350, 690, 867 |
| Sse9I | AATT | 7 cut(s) | 139, 207, 358, 364, 403, 653, 699 |
| SsiI | CCGC | 5 cut(s) | 436, 484, 505, 629, 670 |
| SspI | AATATT | 1 cut(s) | 316 |
| SspMI | CTAG | 4 cut(s) | 38, 570, 618, 740 |
| StyD4I | CCNGG | 1 cut(s) | 492 |
| StyI | CCWWGG | 1 cut(s) | 617 |
| TaaI | ACNGT | 1 cut(s) | 266 |
| TaiI | ACGT | 4 cut(s) | 469, 529, 547, 646 |
| TaqI | TCGA | 2 cut(s) | 5, 688 |
| TasI | AATT | 7 cut(s) | 139, 207, 358, 364, 403, 653, 699 |
| TfiI | GAWTC | 2 cut(s) | 65, 174 |
| Tru1I | TTAA | 2 cut(s) | 312, 656 |
| Tru9I | TTAA | 2 cut(s) | 312, 656 |
| TseFI | GTSAC | 1 cut(s) | 190 |
| Tsp45I | GTSAC | 1 cut(s) | 190 |
| TspDTI | ATGAA | 2 cut(s) | 383, 870 |
| TspGWI | ACGGA | 1 cut(s) | 301 |
| VneI | GTGCAC | 3 cut(s) | 636, 645, 860 |
| VpaK11BI | GGWCC | 1 cut(s) | 766 |
| VspI | ATTAAT | 1 cut(s) | 312 |
| XmaJI | CCTAGG | 1 cut(s) | 617 |
| XspI | CTAG | 4 cut(s) | 38, 570, 618, 740 |