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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 482 |
| AccB1I | GGYRCC | 1 cut(s) | 482 |
| AccII | CGCG | 2 cut(s) | 72, 516 |
| AciI | CCGC | 4 cut(s) | 70, 159, 208, 610 |
| AclI | AACGTT | 1 cut(s) | 398 |
| AclWI | GGATC | 1 cut(s) | 468 |
| AfaI | GTAC | 2 cut(s) | 231, 484 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 64, 527, 598 |
| AflII | CTTAAG | 1 cut(s) | 89 |
| AgsI | TTSAA | 4 cut(s) | 32, 167, 223, 733 |
| AluBI | AGCT | 3 cut(s) | 155, 179, 431 |
| AluI | AGCT | 3 cut(s) | 155, 179, 431 |
| Alw21I | GWGCWC | 1 cut(s) | 141 |
| Alw26I | GTCTC | 3 cut(s) | 32, 343, 633 |
| AlwI | GGATC | 1 cut(s) | 468 |
| AoxI | GGCC | 1 cut(s) | 736 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 252 |
| Asp718I | GGTACC | 1 cut(s) | 482 |
| AspLEI | GCGC | 2 cut(s) | 50, 518 |
| AspS9I | GGNCC | 2 cut(s) | 67, 736 |
| AvaII | GGWCC | 1 cut(s) | 67 |
| AxyI | CCTNAGG | 1 cut(s) | 522 |
| BanI | GGYRCC | 1 cut(s) | 482 |
| BbsI | GAAGAC | 1 cut(s) | 323 |
| Bbv12I | GWGCWC | 1 cut(s) | 141 |
| BccI | CCATC | 4 cut(s) | 92, 122, 265, 715 |
| BciVI | GTATCC | 1 cut(s) | 47 |
| BclI | TGATCA | 1 cut(s) | 694 |
| BcoDI | GTCTC | 3 cut(s) | 32, 343, 633 |
| BfaI | CTAG | 2 cut(s) | 107, 471 |
| BfmI | CTRYAG | 1 cut(s) | 508 |
| BfrI | CTTAAG | 1 cut(s) | 89 |
| BfuI | GTATCC | 1 cut(s) | 47 |
| Bme18I | GGWCC | 1 cut(s) | 67 |
| BmgT120I | GGNCC | 2 cut(s) | 67, 736 |
| BmiI | GGNNCC | 2 cut(s) | 68, 484 |
| BmrI | ACTGGG | 1 cut(s) | 329 |
| BmsI | GCATC | 1 cut(s) | 521 |
| BmuI | ACTGGG | 1 cut(s) | 329 |
| BpiI | GAAGAC | 1 cut(s) | 323 |
| BsaBI | GATNNNNATC | 1 cut(s) | 705 |
| BsaJI | CCNNGG | 1 cut(s) | 477 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 64, 527, 598 |
| Bse1I | ACTGG | 1 cut(s) | 335 |
| Bse21I | CCTNAGG | 1 cut(s) | 522 |
| Bse8I | GATNNNNATC | 1 cut(s) | 705 |
| BseDI | CCNNGG | 1 cut(s) | 477 |
| BseGI | GGATG | 3 cut(s) | 114, 536, 726 |
| BseJI | GATNNNNATC | 1 cut(s) | 705 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 64, 527, 598 |
| BseMII | CTCAG | 1 cut(s) | 423 |
| BseNI | ACTGG | 1 cut(s) | 335 |
| Bsh1236I | CGCG | 2 cut(s) | 72, 516 |
| BshFI | GGCC | 1 cut(s) | 738 |
| BshNI | GGYRCC | 1 cut(s) | 482 |
| BsiHKAI | GWGCWC | 1 cut(s) | 141 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 64, 527, 598 |
| BsmAI | GTCTC | 3 cut(s) | 32, 343, 633 |
| BsmI | GAATGC | 1 cut(s) | 385 |
| BsnI | GGCC | 1 cut(s) | 738 |
| Bsp1286I | GDGCHC | 1 cut(s) | 141 |
| Bsp143I | GATC | 3 cut(s) | 473, 694, 706 |
| BspACI | CCGC | 4 cut(s) | 70, 159, 208, 610 |
| BspANI | GGCC | 1 cut(s) | 738 |
| BspCNI | CTCAG | 1 cut(s) | 424 |
| BspFNI | CGCG | 2 cut(s) | 72, 516 |
| BspHI | TCATGA | 2 cut(s) | 195, 403 |
| BspLI | GGNNCC | 2 cut(s) | 68, 484 |
| BspPI | GGATC | 1 cut(s) | 468 |
| BspQI | GCTCTTC | 1 cut(s) | 720 |
| BspT107I | GGYRCC | 1 cut(s) | 482 |
| BspTI | CTTAAG | 1 cut(s) | 89 |
| BsrI | ACTGG | 1 cut(s) | 335 |
| BssECI | CCNNGG | 1 cut(s) | 477 |
| BssMI | GATC | 3 cut(s) | 473, 694, 706 |
| Bst4CI | ACNGT | 1 cut(s) | 145 |
| Bst6I | CTCTTC | 1 cut(s) | 720 |
| BstAFI | CTTAAG | 1 cut(s) | 89 |
| BstC8I | GCNNGC | 2 cut(s) | 153, 624 |
| BstDEI | CTNAG | 4 cut(s) | 357, 432, 522, 549 |
| BstDSI | CCRYGG | 1 cut(s) | 477 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 525 |
| BstF5I | GGATG | 3 cut(s) | 114, 536, 726 |
| BstFNI | CGCG | 2 cut(s) | 72, 516 |
| BstHHI | GCGC | 2 cut(s) | 50, 518 |
| BstKTI | GATC | 3 cut(s) | 476, 697, 709 |
| BstMAI | GTCTC | 3 cut(s) | 32, 343, 633 |
| BstMBI | GATC | 3 cut(s) | 473, 694, 706 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 167, 176, 671 |
| BstSFI | CTRYAG | 1 cut(s) | 508 |
| BstUI | CGCG | 2 cut(s) | 72, 516 |
| BstV2I | GAAGAC | 1 cut(s) | 323 |
| BstX2I | RGATCY | 1 cut(s) | 473 |
| BstYI | RGATCY | 1 cut(s) | 473 |
| Bsu36I | CCTNAGG | 1 cut(s) | 522 |
| BsuI | GTATCC | 1 cut(s) | 47 |
| BsuRI | GGCC | 1 cut(s) | 738 |
| BtgI | CCRYGG | 1 cut(s) | 477 |
| BtgZI | GCGATG | 1 cut(s) | 87 |
| BtsCI | GGATG | 3 cut(s) | 114, 536, 726 |
| BtsIMutI | CAGTG | 3 cut(s) | 141, 294, 344 |
| Cac8I | GCNNGC | 2 cut(s) | 153, 624 |
| CciI | TCATGA | 2 cut(s) | 195, 403 |
| CfoI | GCGC | 2 cut(s) | 50, 518 |
| Cfr13I | GGNCC | 2 cut(s) | 67, 736 |
| Csp6I | GTAC | 2 cut(s) | 230, 483 |
| CviAII | CATG | 5 cut(s) | 196, 404, 421, 627, 682 |
| CviQI | GTAC | 2 cut(s) | 230, 483 |
| DdeI | CTNAG | 4 cut(s) | 357, 432, 522, 549 |
| DpnI | GATC | 3 cut(s) | 475, 696, 708 |
| DpnII | GATC | 3 cut(s) | 473, 694, 706 |
| Eam1104I | CTCTTC | 1 cut(s) | 720 |
| EarI | CTCTTC | 1 cut(s) | 720 |
| Eco47I | GGWCC | 1 cut(s) | 67 |
| Eco81I | CCTNAGG | 1 cut(s) | 522 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 525 |
| FaeI | CATG | 5 cut(s) | 199, 407, 424, 630, 685 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 8, 40 |
| FatI | CATG | 5 cut(s) | 195, 403, 420, 626, 681 |
| FbaI | TGATCA | 1 cut(s) | 694 |
| FokI | GGATG | 3 cut(s) | 101, 543, 733 |
| FspBI | CTAG | 2 cut(s) | 107, 471 |
| GlaI | GCGC | 2 cut(s) | 49, 517 |
| HaeIII | GGCC | 1 cut(s) | 738 |
| HhaI | GCGC | 2 cut(s) | 50, 518 |
| Hin1II | CATG | 5 cut(s) | 199, 407, 424, 630, 685 |
| Hin6I | GCGC | 2 cut(s) | 48, 516 |
| HinP1I | GCGC | 2 cut(s) | 48, 516 |
| HincII | GTYRAC | 1 cut(s) | 83 |
| HindII | GTYRAC | 1 cut(s) | 83 |
| HinfI | GANTC | 2 cut(s) | 319, 500 |
| Hpy166II | GTNNAC | 1 cut(s) | 83 |
| Hpy188I | TCNGA | 5 cut(s) | 132, 247, 369, 499, 720 |
| Hpy188III | TCNNGA | 7 cut(s) | 107, 196, 404, 471, 567, 659, 698 |
| Hpy8I | GTNNAC | 1 cut(s) | 83 |
| HpyAV | CCTTC | 3 cut(s) | 263, 340, 596 |
| HpyCH4III | ACNGT | 1 cut(s) | 145 |
| HpyCH4IV | ACGT | 5 cut(s) | 135, 388, 398, 426, 571 |
| HpyCH4V | TGCA | 3 cut(s) | 383, 534, 626 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 167, 176, 671 |
| HpyF3I | CTNAG | 4 cut(s) | 357, 432, 522, 549 |
| HpySE526I | ACGT | 5 cut(s) | 135, 388, 398, 426, 571 |
| Hsp92II | CATG | 5 cut(s) | 199, 407, 424, 630, 685 |
| HspAI | GCGC | 2 cut(s) | 48, 516 |
| KpnI | GGTACC | 1 cut(s) | 486 |
| Ksp22I | TGATCA | 1 cut(s) | 694 |
| Kzo9I | GATC | 3 cut(s) | 473, 694, 706 |
| LguI | GCTCTTC | 1 cut(s) | 720 |
| LmnI | GCTCC | 1 cut(s) | 685 |
| LpnPI | CCDG | 8 cut(s) | 23, 30, 36, 46, 348, 369, 552, 561 |
| LweI | GCATC | 1 cut(s) | 521 |
| MaeI | CTAG | 2 cut(s) | 107, 471 |
| MaeII | ACGT | 5 cut(s) | 135, 388, 398, 426, 571 |
| MaeIII | GTNAC | 1 cut(s) | 5 |
| MalI | GATC | 3 cut(s) | 475, 696, 708 |
| MboI | GATC | 3 cut(s) | 473, 694, 706 |
| MboII | GAAGA | 3 cut(s) | 328, 469, 707 |
| MflI | RGATCY | 1 cut(s) | 473 |
| MhlI | GDGCHC | 1 cut(s) | 141 |
| MluCI | AATT | 5 cut(s) | 32, 189, 361, 562, 631 |
| MlyI | GAGTC | 2 cut(s) | 313, 509 |
| MnlI | CCTC | 3 cut(s) | 215, 521, 592 |
| MroXI | GAANNNNTTC | 1 cut(s) | 252 |
| MseI | TTAA | 3 cut(s) | 21, 90, 760 |
| MspCI | CTTAAG | 1 cut(s) | 89 |
| Mva1269I | GAATGC | 1 cut(s) | 385 |
| MvnI | CGCG | 2 cut(s) | 72, 516 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 167, 176, 671 |
| NdeII | GATC | 3 cut(s) | 473, 694, 706 |
| NlaIII | CATG | 5 cut(s) | 199, 407, 424, 630, 685 |
| NlaIV | GGNNCC | 2 cut(s) | 68, 484 |
| PagI | TCATGA | 2 cut(s) | 195, 403 |
| PciSI | GCTCTTC | 1 cut(s) | 720 |
| PctI | GAATGC | 1 cut(s) | 385 |
| PdmI | GAANNNNTTC | 1 cut(s) | 252 |
| PleI | GAGTC | 2 cut(s) | 313, 508 |
| PpsI | GAGTC | 2 cut(s) | 313, 508 |
| Psp1406I | AACGTT | 1 cut(s) | 398 |
| PspN4I | GGNNCC | 2 cut(s) | 68, 484 |
| PspPI | GGNCC | 2 cut(s) | 67, 736 |
| PsuI | RGATCY | 1 cut(s) | 473 |
| RsaI | GTAC | 2 cut(s) | 231, 484 |
| RsaNI | GTAC | 2 cut(s) | 230, 483 |
| SapI | GCTCTTC | 1 cut(s) | 720 |
| SaqAI | TTAA | 3 cut(s) | 21, 90, 760 |
| Sau3AI | GATC | 3 cut(s) | 473, 694, 706 |
| Sau96I | GGNCC | 2 cut(s) | 67, 736 |
| SchI | GAGTC | 2 cut(s) | 313, 509 |
| SduI | GDGCHC | 1 cut(s) | 141 |
| SfaNI | GCATC | 1 cut(s) | 521 |
| SfcI | CTRYAG | 1 cut(s) | 508 |
| SinI | GGWCC | 1 cut(s) | 67 |
| SmlI | CTYRAG | 1 cut(s) | 89 |
| SmoI | CTYRAG | 1 cut(s) | 89 |
| Sse9I | AATT | 5 cut(s) | 32, 189, 361, 562, 631 |
| SsiI | CCGC | 4 cut(s) | 70, 159, 208, 610 |
| SspMI | CTAG | 2 cut(s) | 107, 471 |
| TaaI | ACNGT | 1 cut(s) | 145 |
| TaiI | ACGT | 5 cut(s) | 138, 391, 401, 429, 574 |
| TasI | AATT | 5 cut(s) | 32, 189, 361, 562, 631 |
| TatI | WGTACW | 1 cut(s) | 229 |
| Tru1I | TTAA | 3 cut(s) | 21, 90, 760 |
| Tru9I | TTAA | 3 cut(s) | 21, 90, 760 |
| TscAI | CASTG | 3 cut(s) | 148, 301, 351 |
| TspDTI | ATGAA | 3 cut(s) | 392, 437, 570 |
| TspGWI | ACGGA | 1 cut(s) | 466 |
| TspRI | CASTG | 3 cut(s) | 148, 301, 351 |
| Vha464I | CTTAAG | 1 cut(s) | 89 |
| VpaK11BI | GGWCC | 1 cut(s) | 67 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 525 |
| XbaI | TCTAGA | 2 cut(s) | 106, 470 |
| XmnI | GAANNNNTTC | 1 cut(s) | 252 |
| XspI | CTAG | 2 cut(s) | 107, 471 |