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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 543 |
| AccB1I | GGYRCC | 4 cut(s) | 498, 656, 821, 902 |
| AccII | CGCG | 1 cut(s) | 483 |
| AccIII | TCCGGA | 1 cut(s) | 463 |
| AciI | CCGC | 2 cut(s) | 175, 825 |
| AclWI | GGATC | 2 cut(s) | 365, 435 |
| AcoI | YGGCCR | 1 cut(s) | 643 |
| AcsI | RAATTY | 2 cut(s) | 242, 970 |
| AcyI | GRCGYC | 5 cut(s) | 499, 657, 873, 885, 903 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 847, 851 |
| AgsI | TTSAA | 3 cut(s) | 190, 694, 938 |
| AjiI | CACGTC | 1 cut(s) | 70 |
| AjnI | CCWGG | 1 cut(s) | 63 |
| AluBI | AGCT | 6 cut(s) | 89, 95, 376, 386, 698, 779 |
| AluI | AGCT | 6 cut(s) | 89, 95, 376, 386, 698, 779 |
| Alw21I | GWGCWC | 1 cut(s) | 378 |
| Alw26I | GTCTC | 2 cut(s) | 291, 310 |
| AlwI | GGATC | 2 cut(s) | 365, 435 |
| Aor13HI | TCCGGA | 1 cut(s) | 463 |
| AoxI | GGCC | 2 cut(s) | 643, 959 |
| ApoI | RAATTY | 2 cut(s) | 242, 970 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 219 |
| AspA2I | CCTAGG | 1 cut(s) | 845 |
| AspLEI | GCGC | 4 cut(s) | 485, 501, 659, 905 |
| AspS9I | GGNCC | 1 cut(s) | 545 |
| AsuHPI | GGTGA | 3 cut(s) | 787, 908, 916 |
| AvaII | GGWCC | 1 cut(s) | 545 |
| AvrII | CCTAGG | 1 cut(s) | 845 |
| AxyI | CCTNAGG | 1 cut(s) | 521 |
| BaeGI | GKGCMC | 1 cut(s) | 766 |
| BalI | TGGCCA | 1 cut(s) | 645 |
| BanI | GGYRCC | 4 cut(s) | 498, 656, 821, 902 |
| BanII | GRGCYC | 1 cut(s) | 378 |
| Bbv12I | GWGCWC | 1 cut(s) | 378 |
| BccI | CCATC | 7 cut(s) | 149, 156, 684, 839, 875, 893, 897 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 329, 363 |
| BciT130I | CCWGG | 1 cut(s) | 65 |
| BciVI | GTATCC | 1 cut(s) | 520 |
| BclI | TGATCA | 1 cut(s) | 754 |
| BcoDI | GTCTC | 2 cut(s) | 291, 310 |
| BfaI | CTAG | 4 cut(s) | 780, 846, 908, 963 |
| BfmI | CTRYAG | 1 cut(s) | 348 |
| BfoI | RGCGCY | 3 cut(s) | 502, 660, 906 |
| BfuI | GTATCC | 1 cut(s) | 520 |
| BlnI | CCTAGG | 1 cut(s) | 845 |
| Bme1390I | CCNGG | 1 cut(s) | 65 |
| Bme18I | GGWCC | 1 cut(s) | 545 |
| BmgBI | CACGTC | 1 cut(s) | 70 |
| BmgT120I | GGNCC | 1 cut(s) | 545 |
| BmiI | GGNNCC | 5 cut(s) | 500, 599, 658, 823, 904 |
| BmrFI | CCNGG | 1 cut(s) | 65 |
| BmsI | GCATC | 2 cut(s) | 676, 907 |
| Bpu10I | CCTNAGC | 1 cut(s) | 956 |
| BpuEI | CTTGAG | 1 cut(s) | 75 |
| BsaHI | GRCGYC | 5 cut(s) | 499, 657, 873, 885, 903 |
| BsaJI | CCNNGG | 3 cut(s) | 444, 845, 876 |
| BsaWI | WCCGGW | 1 cut(s) | 463 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 847, 851 |
| Bse1I | ACTGG | 1 cut(s) | 49 |
| Bse21I | CCTNAGG | 1 cut(s) | 521 |
| Bse3DI | GCAATG | 1 cut(s) | 311 |
| BseAI | TCCGGA | 1 cut(s) | 463 |
| BseBI | CCWGG | 1 cut(s) | 65 |
| BseDI | CCNNGG | 3 cut(s) | 444, 845, 876 |
| BseGI | GGATG | 3 cut(s) | 144, 414, 886 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 847, 851 |
| BseMI | GCAATG | 1 cut(s) | 311 |
| BseMII | CTCAG | 3 cut(s) | 149, 225, 970 |
| BseNI | ACTGG | 1 cut(s) | 49 |
| BseRI | GAGGAG | 1 cut(s) | 690 |
| BseSI | GKGCMC | 1 cut(s) | 766 |
| BseYI | CCCAGC | 1 cut(s) | 851 |
| Bsh1236I | CGCG | 1 cut(s) | 483 |
| BshFI | GGCC | 2 cut(s) | 645, 961 |
| BshNI | GGYRCC | 4 cut(s) | 498, 656, 821, 902 |
| BsiHKAI | GWGCWC | 1 cut(s) | 378 |
| BsiSI | CCGG | 1 cut(s) | 464 |
| BslFI | GGGAC | 1 cut(s) | 845 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 847, 851 |
| BsmAI | GTCTC | 2 cut(s) | 291, 310 |
| BsmBI | CGTCTC | 1 cut(s) | 310 |
| BsmFI | GGGAC | 1 cut(s) | 845 |
| BsnI | GGCC | 2 cut(s) | 645, 961 |
| Bsp1286I | GDGCHC | 2 cut(s) | 378, 766 |
| Bsp13I | TCCGGA | 1 cut(s) | 463 |
| Bsp143I | GATC | 3 cut(s) | 357, 440, 754 |
| Bsp19I | CCATGG | 1 cut(s) | 876 |
| BspACI | CCGC | 2 cut(s) | 175, 825 |
| BspANI | GGCC | 2 cut(s) | 645, 961 |
| BspCNI | CTCAG | 3 cut(s) | 150, 224, 969 |
| BspEI | TCCGGA | 1 cut(s) | 463 |
| BspFNI | CGCG | 1 cut(s) | 483 |
| BspHI | TCATGA | 1 cut(s) | 370 |
| BspLI | GGNNCC | 5 cut(s) | 500, 599, 658, 823, 904 |
| BspMAI | CTGCAG | 1 cut(s) | 352 |
| BspPI | GGATC | 2 cut(s) | 365, 435 |
| BspT107I | GGYRCC | 4 cut(s) | 498, 656, 821, 902 |
| BsrDI | GCAATG | 1 cut(s) | 311 |
| BsrI | ACTGG | 1 cut(s) | 49 |
| BssECI | CCNNGG | 3 cut(s) | 444, 845, 876 |
| BssMI | GATC | 3 cut(s) | 357, 440, 754 |
| BssNI | GRCGYC | 5 cut(s) | 499, 657, 873, 885, 903 |
| BssT1I | CCWWGG | 2 cut(s) | 845, 876 |
| Bst2UI | CCWGG | 1 cut(s) | 65 |
| Bst4CI | ACNGT | 1 cut(s) | 79 |
| Bst6I | CTCTTC | 1 cut(s) | 598 |
| BstACI | GRCGYC | 5 cut(s) | 499, 657, 873, 885, 903 |
| BstC8I | GCNNGC | 1 cut(s) | 87 |
| BstDEI | CTNAG | 9 cut(s) | 118, 158, 211, 324, 489, 521, 669, 956, 1023 |
| BstDSI | CCRYGG | 2 cut(s) | 444, 876 |
| BstF5I | GGATG | 3 cut(s) | 144, 414, 886 |
| BstFNI | CGCG | 1 cut(s) | 483 |
| BstH2I | RGCGCY | 3 cut(s) | 502, 660, 906 |
| BstHHI | GCGC | 4 cut(s) | 485, 501, 659, 905 |
| BstKTI | GATC | 3 cut(s) | 360, 443, 757 |
| BstMAI | GTCTC | 2 cut(s) | 291, 310 |
| BstMBI | GATC | 3 cut(s) | 357, 440, 754 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 131, 505, 695, 991 |
| BstNI | CCWGG | 1 cut(s) | 65 |
| BstSCI | CCNGG | 1 cut(s) | 63 |
| BstSFI | CTRYAG | 1 cut(s) | 348 |
| BstSLI | GKGCMC | 1 cut(s) | 766 |
| BstUI | CGCG | 1 cut(s) | 483 |
| BstX2I | RGATCY | 1 cut(s) | 440 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 653 |
| BstYI | RGATCY | 1 cut(s) | 440 |
| Bsu36I | CCTNAGG | 1 cut(s) | 521 |
| BsuI | GTATCC | 1 cut(s) | 520 |
| BsuRI | GGCC | 2 cut(s) | 645, 961 |
| BtgI | CCRYGG | 2 cut(s) | 444, 876 |
| BtrI | CACGTC | 1 cut(s) | 70 |
| BtsCI | GGATG | 3 cut(s) | 144, 414, 886 |
| Cac8I | GCNNGC | 1 cut(s) | 87 |
| CciI | TCATGA | 1 cut(s) | 370 |
| CfoI | GCGC | 4 cut(s) | 485, 501, 659, 905 |
| Cfr13I | GGNCC | 1 cut(s) | 545 |
| CseI | GACGC | 3 cut(s) | 874, 881, 961 |
| CviAII | CATG | 6 cut(s) | 371, 407, 647, 869, 877, 893 |
| DdeI | CTNAG | 9 cut(s) | 118, 158, 211, 324, 489, 521, 669, 956, 1023 |
| DinI | GGCGCC | 3 cut(s) | 500, 658, 904 |
| DpnI | GATC | 3 cut(s) | 359, 442, 756 |
| DpnII | GATC | 3 cut(s) | 357, 440, 754 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 543 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 543 |
| EaeI | YGGCCR | 1 cut(s) | 643 |
| Eam1104I | CTCTTC | 1 cut(s) | 598 |
| EarI | CTCTTC | 1 cut(s) | 598 |
| Ecl136II | GAGCTC | 1 cut(s) | 376 |
| Eco130I | CCWWGG | 2 cut(s) | 845, 876 |
| Eco147I | AGGCCT | 1 cut(s) | 961 |
| Eco24I | GRGCYC | 1 cut(s) | 378 |
| Eco32I | GATATC | 1 cut(s) | 790 |
| Eco47I | GGWCC | 1 cut(s) | 545 |
| Eco53kI | GAGCTC | 1 cut(s) | 376 |
| Eco81I | CCTNAGG | 1 cut(s) | 521 |
| EcoICRI | GAGCTC | 1 cut(s) | 376 |
| EcoRII | CCWGG | 1 cut(s) | 63 |
| EcoRV | GATATC | 1 cut(s) | 790 |
| EcoT14I | CCWWGG | 2 cut(s) | 845, 876 |
| EcoT38I | GRGCYC | 1 cut(s) | 378 |
| EgeI | GGCGCC | 3 cut(s) | 500, 658, 904 |
| EheI | GGCGCC | 3 cut(s) | 500, 658, 904 |
| ErhI | CCWWGG | 2 cut(s) | 845, 876 |
| Esp3I | CGTCTC | 1 cut(s) | 310 |
| FaeI | CATG | 6 cut(s) | 374, 410, 650, 872, 880, 896 |
| FaqI | GGGAC | 1 cut(s) | 845 |
| FatI | CATG | 6 cut(s) | 370, 406, 646, 868, 876, 892 |
| FauNDI | CATATG | 1 cut(s) | 265 |
| FbaI | TGATCA | 1 cut(s) | 754 |
| FokI | GGATG | 3 cut(s) | 131, 401, 893 |
| FriOI | GRGCYC | 1 cut(s) | 378 |
| FspBI | CTAG | 4 cut(s) | 780, 846, 908, 963 |
| GlaI | GCGC | 4 cut(s) | 484, 500, 658, 904 |
| GsaI | CCCAGC | 1 cut(s) | 855 |
| HaeII | RGCGCY | 3 cut(s) | 502, 660, 906 |
| HaeIII | GGCC | 2 cut(s) | 645, 961 |
| HapII | CCGG | 1 cut(s) | 464 |
| HgaI | GACGC | 3 cut(s) | 874, 881, 961 |
| HhaI | GCGC | 4 cut(s) | 485, 501, 659, 905 |
| Hin1I | GRCGYC | 5 cut(s) | 499, 657, 873, 885, 903 |
| Hin1II | CATG | 6 cut(s) | 374, 410, 650, 872, 880, 896 |
| Hin6I | GCGC | 4 cut(s) | 483, 499, 657, 903 |
| HinP1I | GCGC | 4 cut(s) | 483, 499, 657, 903 |
| HincII | GTYRAC | 1 cut(s) | 611 |
| HindII | GTYRAC | 1 cut(s) | 611 |
| HindIII | AAGCTT | 1 cut(s) | 93 |
| HinfI | GANTC | 3 cut(s) | 154, 277, 467 |
| HpaII | CCGG | 1 cut(s) | 464 |
| HphI | GGTGA | 3 cut(s) | 787, 908, 916 |
| Hpy166II | GTNNAC | 1 cut(s) | 611 |
| Hpy188I | TCNGA | 6 cut(s) | 52, 159, 214, 282, 754, 951 |
| Hpy188III | TCNNGA | 6 cut(s) | 200, 371, 438, 464, 534, 738 |
| Hpy8I | GTNNAC | 1 cut(s) | 611 |
| HpyAV | CCTTC | 3 cut(s) | 489, 563, 812 |
| HpyCH4III | ACNGT | 1 cut(s) | 79 |
| HpyCH4IV | ACGT | 2 cut(s) | 69, 613 |
| HpyCH4V | TGCA | 3 cut(s) | 311, 350, 920 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 131, 505, 695, 991 |
| HpyF3I | CTNAG | 9 cut(s) | 118, 158, 211, 324, 489, 521, 669, 956, 1023 |
| HpySE526I | ACGT | 2 cut(s) | 69, 613 |
| Hsp92I | GRCGYC | 5 cut(s) | 499, 657, 873, 885, 903 |
| Hsp92II | CATG | 6 cut(s) | 374, 410, 650, 872, 880, 896 |
| HspAI | GCGC | 4 cut(s) | 483, 499, 657, 903 |
| KasI | GGCGCC | 3 cut(s) | 498, 656, 902 |
| Kpn2I | TCCGGA | 1 cut(s) | 463 |
| Ksp22I | TGATCA | 1 cut(s) | 754 |
| Kzo9I | GATC | 3 cut(s) | 357, 440, 754 |
| LmnI | GCTCC | 3 cut(s) | 34, 383, 703 |
| LweI | GCATC | 2 cut(s) | 676, 907 |
| MaeI | CTAG | 4 cut(s) | 780, 846, 908, 963 |
| MaeII | ACGT | 2 cut(s) | 69, 613 |
| MaeIII | GTNAC | 2 cut(s) | 5, 343 |
| MalI | GATC | 3 cut(s) | 359, 442, 756 |
| MboI | GATC | 3 cut(s) | 357, 440, 754 |
| MboII | GAAGA | 4 cut(s) | 113, 436, 615, 797 |
| MflI | RGATCY | 1 cut(s) | 440 |
| MhlI | GDGCHC | 2 cut(s) | 378, 766 |
| MlsI | TGGCCA | 1 cut(s) | 645 |
| MluCI | AATT | 5 cut(s) | 17, 242, 433, 472, 970 |
| MluNI | TGGCCA | 1 cut(s) | 645 |
| Mly113I | GGCGCC | 3 cut(s) | 499, 657, 903 |
| MlyI | GAGTC | 1 cut(s) | 148 |
| MnlI | CCTC | 7 cut(s) | 115, 182, 311, 599, 623, 711, 1005 |
| Mox20I | TGGCCA | 1 cut(s) | 645 |
| MroI | TCCGGA | 1 cut(s) | 463 |
| MroXI | GAANNNNTTC | 1 cut(s) | 219 |
| MscI | TGGCCA | 1 cut(s) | 645 |
| MseI | TTAA | 2 cut(s) | 228, 236 |
| MslI | CAYNNNNRTG | 6 cut(s) | 149, 419, 651, 681, 894, 897 |
| Msp20I | TGGCCA | 1 cut(s) | 645 |
| MspI | CCGG | 1 cut(s) | 464 |
| MspR9I | CCNGG | 1 cut(s) | 65 |
| MvaI | CCWGG | 1 cut(s) | 65 |
| MvnI | CGCG | 1 cut(s) | 483 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 131, 505, 695, 991 |
| NarI | GGCGCC | 3 cut(s) | 499, 657, 903 |
| NcoI | CCATGG | 1 cut(s) | 876 |
| NdeI | CATATG | 1 cut(s) | 265 |
| NdeII | GATC | 3 cut(s) | 357, 440, 754 |
| NlaIII | CATG | 6 cut(s) | 374, 410, 650, 872, 880, 896 |
| NlaIV | GGNNCC | 5 cut(s) | 500, 599, 658, 823, 904 |
| PagI | TCATGA | 1 cut(s) | 370 |
| PceI | AGGCCT | 1 cut(s) | 961 |
| PdmI | GAANNNNTTC | 1 cut(s) | 219 |
| PfeI | GAWTC | 2 cut(s) | 277, 467 |
| PleI | GAGTC | 1 cut(s) | 148 |
| PluTI | GGCGCC | 3 cut(s) | 502, 660, 906 |
| PpsI | GAGTC | 1 cut(s) | 148 |
| Psp124BI | GAGCTC | 1 cut(s) | 378 |
| Psp6I | CCWGG | 1 cut(s) | 63 |
| PspFI | CCCAGC | 1 cut(s) | 851 |
| PspGI | CCWGG | 1 cut(s) | 63 |
| PspN4I | GGNNCC | 5 cut(s) | 500, 599, 658, 823, 904 |
| PspPI | GGNCC | 1 cut(s) | 545 |
| PstI | CTGCAG | 1 cut(s) | 352 |
| PsuI | RGATCY | 1 cut(s) | 440 |
| RseI | CAYNNNNRTG | 6 cut(s) | 149, 419, 651, 681, 894, 897 |
| SacI | GAGCTC | 1 cut(s) | 378 |
| SaqAI | TTAA | 2 cut(s) | 228, 236 |
| Sau3AI | GATC | 3 cut(s) | 357, 440, 754 |
| Sau96I | GGNCC | 1 cut(s) | 545 |
| SchI | GAGTC | 1 cut(s) | 148 |
| ScrFI | CCNGG | 1 cut(s) | 65 |
| SduI | GDGCHC | 2 cut(s) | 378, 766 |
| SfaNI | GCATC | 2 cut(s) | 676, 907 |
| SfcI | CTRYAG | 1 cut(s) | 348 |
| SfoI | GGCGCC | 3 cut(s) | 500, 658, 904 |
| SinI | GGWCC | 1 cut(s) | 545 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 149, 419, 651, 681, 894, 897 |
| SmlI | CTYRAG | 1 cut(s) | 90 |
| SmoI | CTYRAG | 1 cut(s) | 90 |
| Sse9I | AATT | 5 cut(s) | 17, 242, 433, 472, 970 |
| SseBI | AGGCCT | 1 cut(s) | 961 |
| SsiI | CCGC | 2 cut(s) | 175, 825 |
| SspDI | GGCGCC | 3 cut(s) | 498, 656, 902 |
| SspMI | CTAG | 4 cut(s) | 780, 846, 908, 963 |
| SstI | GAGCTC | 1 cut(s) | 378 |
| StuI | AGGCCT | 1 cut(s) | 961 |
| StyD4I | CCNGG | 1 cut(s) | 63 |
| StyI | CCWWGG | 2 cut(s) | 845, 876 |
| TaaI | ACNGT | 1 cut(s) | 79 |
| TaiI | ACGT | 2 cut(s) | 72, 616 |
| TaqI | TCGA | 3 cut(s) | 334, 437, 739 |
| TasI | AATT | 5 cut(s) | 17, 242, 433, 472, 970 |
| TfiI | GAWTC | 2 cut(s) | 277, 467 |
| Tru1I | TTAA | 2 cut(s) | 228, 236 |
| Tru9I | TTAA | 2 cut(s) | 228, 236 |
| TspDTI | ATGAA | 2 cut(s) | 359, 404 |
| TspGWI | ACGGA | 3 cut(s) | 370, 433, 610 |
| VpaK11BI | GGWCC | 1 cut(s) | 545 |
| XapI | RAATTY | 2 cut(s) | 242, 970 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 848, 896 |
| XmaJI | CCTAGG | 1 cut(s) | 845 |
| XmnI | GAANNNNTTC | 1 cut(s) | 219 |
| XspI | CTAG | 4 cut(s) | 780, 846, 908, 963 |