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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 327 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 724 |
| AciI | CCGC | 3 cut(s) | 140, 351, 977 |
| AclWI | GGATC | 2 cut(s) | 371, 583 |
| AcsI | RAATTY | 1 cut(s) | 7 |
| AcuI | CTGAAG | 1 cut(s) | 612 |
| AfaI | GTAC | 1 cut(s) | 206 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 64, 360, 724, 877 |
| AgsI | TTSAA | 3 cut(s) | 196, 320, 419 |
| AhlI | ACTAGT | 1 cut(s) | 611 |
| AjiI | CACGTC | 1 cut(s) | 674 |
| AluBI | AGCT | 7 cut(s) | 134, 152, 541, 653, 701, 893, 961 |
| AluI | AGCT | 7 cut(s) | 134, 152, 541, 653, 701, 893, 961 |
| Alw21I | GWGCWC | 2 cut(s) | 282, 543 |
| Alw26I | GTCTC | 4 cut(s) | 74, 567, 911, 991 |
| AlwI | GGATC | 2 cut(s) | 371, 583 |
| AoxI | GGCC | 4 cut(s) | 66, 107, 727, 838 |
| ApaI | GGGCCC | 2 cut(s) | 70, 731 |
| ApoI | RAATTY | 1 cut(s) | 7 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 679, 711 |
| AspA2I | CCTAGG | 1 cut(s) | 284 |
| AspLEI | GCGC | 1 cut(s) | 315 |
| AspS9I | GGNCC | 5 cut(s) | 66, 67, 107, 727, 728 |
| AsuHPI | GGTGA | 3 cut(s) | 254, 358, 478 |
| AvrII | CCTAGG | 1 cut(s) | 284 |
| BaeGI | GKGCMC | 3 cut(s) | 70, 292, 731 |
| BanII | GRGCYC | 4 cut(s) | 70, 543, 731, 850 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 188, 220 |
| BauI | CACGAG | 1 cut(s) | 702 |
| BbsI | GAAGAC | 2 cut(s) | 506, 873 |
| Bbv12I | GWGCWC | 2 cut(s) | 282, 543 |
| BccI | CCATC | 3 cut(s) | 186, 192, 564 |
| BclI | TGATCA | 1 cut(s) | 786 |
| BcoDI | GTCTC | 4 cut(s) | 74, 567, 911, 991 |
| BcuI | ACTAGT | 1 cut(s) | 611 |
| BfaI | CTAG | 3 cut(s) | 285, 612, 1057 |
| BfmI | CTRYAG | 1 cut(s) | 570 |
| BlnI | CCTAGG | 1 cut(s) | 284 |
| BlpI | GCTNAGC | 1 cut(s) | 525 |
| BmcAI | AGTACT | 1 cut(s) | 206 |
| BmgBI | CACGTC | 1 cut(s) | 674 |
| BmgT120I | GGNCC | 5 cut(s) | 66, 67, 107, 727, 728 |
| BmiI | GGNNCC | 2 cut(s) | 68, 729 |
| BmsI | GCATC | 3 cut(s) | 64, 316, 402 |
| BpiI | GAAGAC | 2 cut(s) | 506, 873 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 525 |
| BpuEI | CTTGAG | 1 cut(s) | 387 |
| BsaJI | CCNNGG | 5 cut(s) | 103, 284, 661, 731, 944 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 381, 411 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 64, 360, 724, 877 |
| Bse1I | ACTGG | 1 cut(s) | 1032 |
| BseDI | CCNNGG | 5 cut(s) | 103, 284, 661, 731, 944 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 64, 360, 724, 877 |
| BseMII | CTCAG | 4 cut(s) | 144, 516, 948, 1002 |
| BseNI | ACTGG | 1 cut(s) | 1032 |
| BseSI | GKGCMC | 3 cut(s) | 70, 292, 731 |
| BsgI | GTGCAG | 2 cut(s) | 155, 882 |
| BshFI | GGCC | 4 cut(s) | 68, 109, 729, 840 |
| BsiHKAI | GWGCWC | 2 cut(s) | 282, 543 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 64, 360, 724, 877 |
| BsmAI | GTCTC | 4 cut(s) | 74, 567, 911, 991 |
| BsmI | GAATGC | 1 cut(s) | 604 |
| BsnI | GGCC | 4 cut(s) | 68, 109, 729, 840 |
| Bsp120I | GGGCCC | 2 cut(s) | 66, 727 |
| Bsp1286I | GDGCHC | 6 cut(s) | 70, 282, 292, 543, 731, 850 |
| Bsp143I | GATC | 4 cut(s) | 363, 499, 575, 786 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 525 |
| Bsp19I | CCATGG | 1 cut(s) | 661 |
| BspACI | CCGC | 3 cut(s) | 140, 351, 977 |
| BspANI | GGCC | 4 cut(s) | 68, 109, 729, 840 |
| BspCNI | CTCAG | 4 cut(s) | 143, 517, 949, 1001 |
| BspLI | GGNNCC | 2 cut(s) | 68, 729 |
| BspPI | GGATC | 2 cut(s) | 371, 583 |
| BsrI | ACTGG | 1 cut(s) | 1032 |
| BssECI | CCNNGG | 5 cut(s) | 103, 284, 661, 731, 944 |
| BssMI | GATC | 4 cut(s) | 363, 499, 575, 786 |
| BssSI | CACGAG | 1 cut(s) | 702 |
| BssT1I | CCWWGG | 5 cut(s) | 103, 284, 661, 731, 944 |
| Bst2BI | CACGAG | 1 cut(s) | 702 |
| Bst4CI | ACNGT | 3 cut(s) | 274, 397, 872 |
| BstC8I | GCNNGC | 1 cut(s) | 850 |
| BstDEI | CTNAG | 6 cut(s) | 130, 153, 525, 821, 957, 988 |
| BstDSI | CCRYGG | 1 cut(s) | 661 |
| BstHHI | GCGC | 1 cut(s) | 315 |
| BstKTI | GATC | 4 cut(s) | 366, 502, 578, 789 |
| BstMAI | GTCTC | 4 cut(s) | 74, 567, 911, 991 |
| BstMBI | GATC | 4 cut(s) | 363, 499, 575, 786 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 74 |
| BstSFI | CTRYAG | 1 cut(s) | 570 |
| BstSLI | GKGCMC | 3 cut(s) | 70, 292, 731 |
| BstV2I | GAAGAC | 2 cut(s) | 506, 873 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 104 |
| BsuRI | GGCC | 4 cut(s) | 68, 109, 729, 840 |
| BtgI | CCRYGG | 1 cut(s) | 661 |
| BtrI | CACGTC | 1 cut(s) | 674 |
| BtsIMutI | CAGTG | 1 cut(s) | 1039 |
| Cac8I | GCNNGC | 1 cut(s) | 850 |
| CfoI | GCGC | 1 cut(s) | 315 |
| Cfr13I | GGNCC | 5 cut(s) | 66, 67, 107, 727, 728 |
| CseI | GACGC | 1 cut(s) | 313 |
| Csp6I | GTAC | 1 cut(s) | 205 |
| CviAII | CATG | 6 cut(s) | 355, 409, 440, 620, 644, 662 |
| CviQI | GTAC | 1 cut(s) | 205 |
| DdeI | CTNAG | 6 cut(s) | 130, 153, 525, 821, 957, 988 |
| DpnI | GATC | 4 cut(s) | 365, 501, 577, 788 |
| DpnII | GATC | 4 cut(s) | 363, 499, 575, 786 |
| EciI | GGCGGA | 1 cut(s) | 340 |
| Ecl136II | GAGCTC | 1 cut(s) | 541 |
| Eco130I | CCWWGG | 5 cut(s) | 103, 284, 661, 731, 944 |
| Eco24I | GRGCYC | 4 cut(s) | 70, 543, 731, 850 |
| Eco53kI | GAGCTC | 1 cut(s) | 541 |
| Eco57I | CTGAAG | 1 cut(s) | 612 |
| EcoICRI | GAGCTC | 1 cut(s) | 541 |
| EcoO109I | RGGNCCY | 1 cut(s) | 67 |
| EcoT14I | CCWWGG | 5 cut(s) | 103, 284, 661, 731, 944 |
| EcoT38I | GRGCYC | 4 cut(s) | 70, 543, 731, 850 |
| ErhI | CCWWGG | 5 cut(s) | 103, 284, 661, 731, 944 |
| FaeI | CATG | 6 cut(s) | 358, 412, 443, 623, 647, 665 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 210, 242 |
| FatI | CATG | 6 cut(s) | 354, 408, 439, 619, 643, 661 |
| FauI | CCCGC | 1 cut(s) | 147 |
| FbaI | TGATCA | 1 cut(s) | 786 |
| FriOI | GRGCYC | 4 cut(s) | 70, 543, 731, 850 |
| FspBI | CTAG | 3 cut(s) | 285, 612, 1057 |
| GlaI | GCGC | 1 cut(s) | 314 |
| HaeIII | GGCC | 4 cut(s) | 68, 109, 729, 840 |
| HgaI | GACGC | 1 cut(s) | 313 |
| HhaI | GCGC | 1 cut(s) | 315 |
| Hin1II | CATG | 6 cut(s) | 358, 412, 443, 623, 647, 665 |
| Hin6I | GCGC | 1 cut(s) | 313 |
| HinP1I | GCGC | 1 cut(s) | 313 |
| HindIII | AAGCTT | 1 cut(s) | 891 |
| HinfI | GANTC | 5 cut(s) | 82, 379, 483, 950, 1041 |
| HphI | GGTGA | 3 cut(s) | 254, 358, 478 |
| Hpy166II | GTNNAC | 1 cut(s) | 258 |
| Hpy188I | TCNGA | 5 cut(s) | 499, 783, 940, 958, 991 |
| Hpy188III | TCNNGA | 4 cut(s) | 89, 320, 361, 760 |
| Hpy8I | GTNNAC | 1 cut(s) | 258 |
| HpyAV | CCTTC | 5 cut(s) | 116, 190, 326, 436, 633 |
| HpyCH4III | ACNGT | 3 cut(s) | 274, 397, 872 |
| HpyCH4IV | ACGT | 2 cut(s) | 292, 673 |
| HpyCH4V | TGCA | 4 cut(s) | 77, 172, 863, 901 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 74 |
| HpyF3I | CTNAG | 6 cut(s) | 130, 153, 525, 821, 957, 988 |
| HpySE526I | ACGT | 2 cut(s) | 292, 673 |
| Hsp92II | CATG | 6 cut(s) | 358, 412, 443, 623, 647, 665 |
| HspAI | GCGC | 1 cut(s) | 313 |
| Ksp22I | TGATCA | 1 cut(s) | 786 |
| Kzo9I | GATC | 4 cut(s) | 363, 499, 575, 786 |
| LmnI | GCTCC | 1 cut(s) | 285 |
| LweI | GCATC | 3 cut(s) | 64, 316, 402 |
| MaeI | CTAG | 3 cut(s) | 285, 612, 1057 |
| MaeII | ACGT | 2 cut(s) | 292, 673 |
| MaeIII | GTNAC | 2 cut(s) | 397, 656 |
| MalI | GATC | 4 cut(s) | 365, 501, 577, 788 |
| MboI | GATC | 4 cut(s) | 363, 499, 575, 786 |
| MboII | GAAGA | 3 cut(s) | 506, 562, 878 |
| MhlI | GDGCHC | 6 cut(s) | 70, 282, 292, 543, 731, 850 |
| MluCI | AATT | 5 cut(s) | 7, 17, 328, 346, 1015 |
| MlyI | GAGTC | 1 cut(s) | 76 |
| MnlI | CCTC | 3 cut(s) | 379, 454, 473 |
| MseI | TTAA | 2 cut(s) | 209, 545 |
| MslI | CAYNNNNRTG | 1 cut(s) | 672 |
| Mva1269I | GAATGC | 1 cut(s) | 604 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 74 |
| NcoI | CCATGG | 1 cut(s) | 661 |
| NdeII | GATC | 4 cut(s) | 363, 499, 575, 786 |
| NlaIII | CATG | 6 cut(s) | 358, 412, 443, 623, 647, 665 |
| NlaIV | GGNNCC | 2 cut(s) | 68, 729 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 856 |
| PctI | GAATGC | 1 cut(s) | 604 |
| PfeI | GAWTC | 4 cut(s) | 379, 483, 950, 1041 |
| PflFI | GACNNNGTC | 1 cut(s) | 675 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 724 |
| PleI | GAGTC | 1 cut(s) | 76 |
| PpsI | GAGTC | 1 cut(s) | 76 |
| PsiI | TTATAA | 1 cut(s) | 327 |
| Psp124BI | GAGCTC | 1 cut(s) | 543 |
| PspN4I | GGNNCC | 2 cut(s) | 68, 729 |
| PspOMI | GGGCCC | 2 cut(s) | 66, 727 |
| PspPI | GGNCC | 5 cut(s) | 66, 67, 107, 727, 728 |
| PsyI | GACNNNGTC | 1 cut(s) | 675 |
| RsaI | GTAC | 1 cut(s) | 206 |
| RsaNI | GTAC | 1 cut(s) | 205 |
| RseI | CAYNNNNRTG | 1 cut(s) | 672 |
| SacI | GAGCTC | 1 cut(s) | 543 |
| SaqAI | TTAA | 2 cut(s) | 209, 545 |
| Sau3AI | GATC | 4 cut(s) | 363, 499, 575, 786 |
| Sau96I | GGNCC | 5 cut(s) | 66, 67, 107, 727, 728 |
| ScaI | AGTACT | 1 cut(s) | 206 |
| SchI | GAGTC | 1 cut(s) | 76 |
| SduI | GDGCHC | 6 cut(s) | 70, 282, 292, 543, 731, 850 |
| SfaNI | GCATC | 3 cut(s) | 64, 316, 402 |
| SfcI | CTRYAG | 1 cut(s) | 570 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 672 |
| SmlI | CTYRAG | 1 cut(s) | 402 |
| SmoI | CTYRAG | 1 cut(s) | 402 |
| SpeI | ACTAGT | 1 cut(s) | 611 |
| Sse9I | AATT | 5 cut(s) | 7, 17, 328, 346, 1015 |
| SsiI | CCGC | 3 cut(s) | 140, 351, 977 |
| SspMI | CTAG | 3 cut(s) | 285, 612, 1057 |
| SstI | GAGCTC | 1 cut(s) | 543 |
| StyI | CCWWGG | 5 cut(s) | 103, 284, 661, 731, 944 |
| TaaI | ACNGT | 3 cut(s) | 274, 397, 872 |
| TaiI | ACGT | 2 cut(s) | 295, 676 |
| TaqI | TCGA | 2 cut(s) | 90, 685 |
| TasI | AATT | 5 cut(s) | 7, 17, 328, 346, 1015 |
| TatI | WGTACW | 1 cut(s) | 204 |
| TfiI | GAWTC | 4 cut(s) | 379, 483, 950, 1041 |
| Tru1I | TTAA | 2 cut(s) | 209, 545 |
| Tru9I | TTAA | 2 cut(s) | 209, 545 |
| TscAI | CASTG | 1 cut(s) | 1039 |
| TspDTI | ATGAA | 5 cut(s) | 312, 392, 428, 563, 942 |
| TspRI | CASTG | 1 cut(s) | 1039 |
| Tth111I | GACNNNGTC | 1 cut(s) | 675 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 724 |
| XapI | RAATTY | 1 cut(s) | 7 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 231 |
| XmaJI | CCTAGG | 1 cut(s) | 284 |
| XspI | CTAG | 3 cut(s) | 285, 612, 1057 |
| ZrmI | AGTACT | 1 cut(s) | 206 |