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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 405 |
| AatII | GACGTC | 1 cut(s) | 403 |
| AccB1I | GGYRCC | 1 cut(s) | 245 |
| AccII | CGCG | 1 cut(s) | 345 |
| AccIII | TCCGGA | 1 cut(s) | 325 |
| AcsI | RAATTY | 1 cut(s) | 104 |
| AcyI | GRCGYC | 1 cut(s) | 400 |
| AfaI | GTAC | 1 cut(s) | 60 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 356, 427 |
| AjnI | CCWGG | 1 cut(s) | 403 |
| AluBI | AGCT | 2 cut(s) | 238, 260 |
| AluI | AGCT | 2 cut(s) | 238, 260 |
| Alw26I | GTCTC | 1 cut(s) | 172 |
| Aor13HI | TCCGGA | 1 cut(s) | 325 |
| ApoI | RAATTY | 1 cut(s) | 104 |
| AspLEI | GCGC | 1 cut(s) | 347 |
| AspS9I | GGNCC | 1 cut(s) | 407 |
| AvaII | GGWCC | 1 cut(s) | 407 |
| BanI | GGYRCC | 1 cut(s) | 245 |
| BbsI | GAAGAC | 1 cut(s) | 152 |
| BccI | CCATC | 1 cut(s) | 94 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 17, 51 |
| BciT130I | CCWGG | 1 cut(s) | 405 |
| BcoDI | GTCTC | 1 cut(s) | 172 |
| BfaI | CTAG | 2 cut(s) | 213, 300 |
| Bme1390I | CCNGG | 1 cut(s) | 405 |
| Bme18I | GGWCC | 1 cut(s) | 407 |
| BmgT120I | GGNCC | 1 cut(s) | 407 |
| BmiI | GGNNCC | 2 cut(s) | 247, 313 |
| BmrFI | CCNGG | 1 cut(s) | 405 |
| BmsI | GCATC | 1 cut(s) | 228 |
| BpiI | GAAGAC | 1 cut(s) | 152 |
| BsaBI | GATNNNNATC | 1 cut(s) | 137 |
| BsaHI | GRCGYC | 1 cut(s) | 400 |
| BsaJI | CCNNGG | 2 cut(s) | 306, 351 |
| BsaWI | WCCGGW | 1 cut(s) | 325 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 356, 427 |
| Bse8I | GATNNNNATC | 1 cut(s) | 137 |
| BseAI | TCCGGA | 1 cut(s) | 325 |
| BseBI | CCWGG | 1 cut(s) | 405 |
| BseDI | CCNNGG | 2 cut(s) | 306, 351 |
| BseJI | GATNNNNATC | 1 cut(s) | 137 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 356, 427 |
| Bsh1236I | CGCG | 1 cut(s) | 345 |
| BshNI | GGYRCC | 1 cut(s) | 245 |
| BsiSI | CCGG | 1 cut(s) | 326 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 356, 427 |
| BsmAI | GTCTC | 1 cut(s) | 172 |
| BsmBI | CGTCTC | 1 cut(s) | 172 |
| Bsp13I | TCCGGA | 1 cut(s) | 325 |
| Bsp143I | GATC | 1 cut(s) | 138 |
| BspEI | TCCGGA | 1 cut(s) | 325 |
| BspFNI | CGCG | 1 cut(s) | 345 |
| BspHI | TCATGA | 1 cut(s) | 232 |
| BspLI | GGNNCC | 2 cut(s) | 247, 313 |
| BspT107I | GGYRCC | 1 cut(s) | 245 |
| BssECI | CCNNGG | 2 cut(s) | 306, 351 |
| BssMI | GATC | 1 cut(s) | 138 |
| BssNI | GRCGYC | 1 cut(s) | 400 |
| BssT1I | CCWWGG | 1 cut(s) | 351 |
| Bst2UI | CCWGG | 1 cut(s) | 405 |
| BstACI | GRCGYC | 1 cut(s) | 400 |
| BstDEI | CTNAG | 2 cut(s) | 13, 378 |
| BstDSI | CCRYGG | 1 cut(s) | 306 |
| BstFNI | CGCG | 1 cut(s) | 345 |
| BstHHI | GCGC | 1 cut(s) | 347 |
| BstKTI | GATC | 1 cut(s) | 141 |
| BstMAI | GTCTC | 1 cut(s) | 172 |
| BstMBI | GATC | 1 cut(s) | 138 |
| BstNI | CCWGG | 1 cut(s) | 405 |
| BstSCI | CCNGG | 1 cut(s) | 403 |
| BstUI | CGCG | 1 cut(s) | 345 |
| BstV2I | GAAGAC | 1 cut(s) | 152 |
| BtgI | CCRYGG | 1 cut(s) | 306 |
| BtsIMutI | CAGTG | 1 cut(s) | 123 |
| CciI | TCATGA | 1 cut(s) | 232 |
| CfoI | GCGC | 1 cut(s) | 347 |
| Cfr13I | GGNCC | 1 cut(s) | 407 |
| CseI | GACGC | 2 cut(s) | 225, 369 |
| Csp6I | GTAC | 1 cut(s) | 59 |
| CviAII | CATG | 2 cut(s) | 233, 250 |
| CviJI | RGCY | 5 cut(s) | 33, 185, 238, 260, 441 |
| CviKI_1 | RGCY | 5 cut(s) | 33, 185, 238, 260, 441 |
| CviQI | GTAC | 1 cut(s) | 59 |
| DdeI | CTNAG | 2 cut(s) | 13, 378 |
| DpnI | GATC | 1 cut(s) | 140 |
| DpnII | GATC | 1 cut(s) | 138 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 405 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 405 |
| Eco130I | CCWWGG | 1 cut(s) | 351 |
| Eco47I | GGWCC | 1 cut(s) | 407 |
| EcoRII | CCWGG | 1 cut(s) | 403 |
| EcoT14I | CCWWGG | 1 cut(s) | 351 |
| ErhI | CCWWGG | 1 cut(s) | 351 |
| Esp3I | CGTCTC | 1 cut(s) | 172 |
| FaeI | CATG | 2 cut(s) | 236, 253 |
| FaiI | YATR | 8 cut(s) | 30, 98, 234, 251, 278, 294, 339, 412 |
| FatI | CATG | 2 cut(s) | 232, 249 |
| FspBI | CTAG | 2 cut(s) | 213, 300 |
| GlaI | GCGC | 1 cut(s) | 346 |
| HapII | CCGG | 1 cut(s) | 326 |
| HgaI | GACGC | 2 cut(s) | 225, 369 |
| HhaI | GCGC | 1 cut(s) | 347 |
| Hin1I | GRCGYC | 1 cut(s) | 400 |
| Hin1II | CATG | 2 cut(s) | 236, 253 |
| Hin6I | GCGC | 1 cut(s) | 345 |
| HinP1I | GCGC | 1 cut(s) | 345 |
| HinfI | GANTC | 2 cut(s) | 148, 329 |
| HpaII | CCGG | 1 cut(s) | 326 |
| Hpy166II | GTNNAC | 1 cut(s) | 113 |
| Hpy188I | TCNGA | 2 cut(s) | 76, 198 |
| Hpy188III | TCNNGA | 6 cut(s) | 8, 142, 233, 300, 326, 396 |
| Hpy8I | GTNNAC | 1 cut(s) | 113 |
| HpyAV | CCTTC | 3 cut(s) | 44, 169, 425 |
| HpyCH4IV | ACGT | 1 cut(s) | 400 |
| HpyCH4V | TGCA | 1 cut(s) | 173 |
| HpyF3I | CTNAG | 2 cut(s) | 13, 378 |
| HpySE526I | ACGT | 1 cut(s) | 400 |
| Hsp92I | GRCGYC | 1 cut(s) | 400 |
| Hsp92II | CATG | 2 cut(s) | 236, 253 |
| HspAI | GCGC | 1 cut(s) | 345 |
| Kpn2I | TCCGGA | 1 cut(s) | 325 |
| Kzo9I | GATC | 1 cut(s) | 138 |
| LmnI | GCTCC | 1 cut(s) | 367 |
| LpnPI | CCDG | 5 cut(s) | 21, 339, 381, 390, 417 |
| LweI | GCATC | 1 cut(s) | 228 |
| MaeI | CTAG | 2 cut(s) | 213, 300 |
| MaeII | ACGT | 1 cut(s) | 400 |
| MalI | GATC | 1 cut(s) | 140 |
| MboI | GATC | 1 cut(s) | 138 |
| MboII | GAAGA | 2 cut(s) | 157, 298 |
| MluCI | AATT | 6 cut(s) | 70, 104, 240, 321, 334, 391 |
| MlyI | GAGTC | 2 cut(s) | 142, 338 |
| MnlI | CCTC | 2 cut(s) | 350, 421 |
| MroI | TCCGGA | 1 cut(s) | 325 |
| MseI | TTAA | 1 cut(s) | 51 |
| MslI | CAYNNNNRTG | 1 cut(s) | 281 |
| MspI | CCGG | 1 cut(s) | 326 |
| MspR9I | CCNGG | 1 cut(s) | 405 |
| MvaI | CCWGG | 1 cut(s) | 405 |
| MvnI | CGCG | 1 cut(s) | 345 |
| NdeII | GATC | 1 cut(s) | 138 |
| NlaIII | CATG | 2 cut(s) | 236, 253 |
| NlaIV | GGNNCC | 2 cut(s) | 247, 313 |
| PagI | TCATGA | 1 cut(s) | 232 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 367 |
| PleI | GAGTC | 2 cut(s) | 142, 337 |
| PpsI | GAGTC | 2 cut(s) | 142, 337 |
| Psp6I | CCWGG | 1 cut(s) | 403 |
| PspGI | CCWGG | 1 cut(s) | 403 |
| PspN4I | GGNNCC | 2 cut(s) | 247, 313 |
| PspPI | GGNCC | 1 cut(s) | 407 |
| RsaI | GTAC | 1 cut(s) | 60 |
| RsaNI | GTAC | 1 cut(s) | 59 |
| RseI | CAYNNNNRTG | 1 cut(s) | 281 |
| SaqAI | TTAA | 1 cut(s) | 51 |
| Sau3AI | GATC | 1 cut(s) | 138 |
| Sau96I | GGNCC | 1 cut(s) | 407 |
| SchI | GAGTC | 2 cut(s) | 142, 338 |
| ScrFI | CCNGG | 1 cut(s) | 405 |
| SetI | ASST | 4 cut(s) | 161, 240, 262, 403 |
| SfaNI | GCATC | 1 cut(s) | 228 |
| SinI | GGWCC | 1 cut(s) | 407 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 281 |
| Sse9I | AATT | 6 cut(s) | 70, 104, 240, 321, 334, 391 |
| SspMI | CTAG | 2 cut(s) | 213, 300 |
| StyD4I | CCNGG | 1 cut(s) | 403 |
| StyI | CCWWGG | 1 cut(s) | 351 |
| TaiI | ACGT | 1 cut(s) | 403 |
| TaqI | TCGA | 1 cut(s) | 141 |
| TasI | AATT | 6 cut(s) | 70, 104, 240, 321, 334, 391 |
| TatI | WGTACW | 1 cut(s) | 58 |
| Tru1I | TTAA | 1 cut(s) | 51 |
| Tru9I | TTAA | 1 cut(s) | 51 |
| TscAI | CASTG | 1 cut(s) | 130 |
| TspDTI | ATGAA | 2 cut(s) | 221, 266 |
| TspGWI | ACGGA | 1 cut(s) | 74 |
| TspRI | CASTG | 1 cut(s) | 130 |
| VpaK11BI | GGWCC | 1 cut(s) | 407 |
| XapI | RAATTY | 1 cut(s) | 104 |
| XbaI | TCTAGA | 1 cut(s) | 299 |
| XspI | CTAG | 2 cut(s) | 213, 300 |
| ZraI | GACGTC | 1 cut(s) | 401 |