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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 306 |
| AccII | CGCG | 1 cut(s) | 209 |
| AciI | CCGC | 3 cut(s) | 207, 209, 561 |
| AcoI | YGGCCR | 1 cut(s) | 406 |
| AcuI | CTGAAG | 1 cut(s) | 660 |
| AcyI | GRCGYC | 1 cut(s) | 262 |
| AdeI | CACNNNGTG | 1 cut(s) | 601 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 257 |
| AgsI | TTSAA | 3 cut(s) | 457, 649, 683 |
| AleI | CACNNNNGTG | 1 cut(s) | 29 |
| AluBI | AGCT | 4 cut(s) | 93, 139, 542, 593 |
| AluI | AGCT | 4 cut(s) | 93, 139, 542, 593 |
| Alw21I | GWGCWC | 2 cut(s) | 141, 486 |
| Alw26I | GTCTC | 2 cut(s) | 196, 662 |
| AoxI | GGCC | 2 cut(s) | 406, 655 |
| AspLEI | GCGC | 1 cut(s) | 248 |
| AspS9I | GGNCC | 1 cut(s) | 308 |
| AsuHPI | GGTGA | 1 cut(s) | 632 |
| AvaII | GGWCC | 1 cut(s) | 308 |
| AxyI | CCTNAGG | 1 cut(s) | 284 |
| BaeGI | GKGCMC | 1 cut(s) | 529 |
| BalI | TGGCCA | 1 cut(s) | 408 |
| BanII | GRGCYC | 1 cut(s) | 141 |
| BauI | CACGAG | 1 cut(s) | 543 |
| BbsI | GAAGAC | 1 cut(s) | 648 |
| Bbv12I | GWGCWC | 2 cut(s) | 141, 486 |
| BccI | CCATC | 3 cut(s) | 73, 74, 447 |
| BciVI | GTATCC | 1 cut(s) | 283 |
| BcoDI | GTCTC | 2 cut(s) | 196, 662 |
| BfmI | CTRYAG | 1 cut(s) | 111 |
| BfuI | GTATCC | 1 cut(s) | 283 |
| BisI | GCNGC | 1 cut(s) | 561 |
| BlsI | GCNGC | 1 cut(s) | 562 |
| Bme18I | GGWCC | 1 cut(s) | 308 |
| BmgT120I | GGNCC | 1 cut(s) | 308 |
| BmiI | GGNNCC | 2 cut(s) | 148, 421 |
| BmsI | GCATC | 1 cut(s) | 439 |
| BpiI | GAAGAC | 1 cut(s) | 648 |
| Bsa29I | ATCGAT | 1 cut(s) | 102 |
| BsaHI | GRCGYC | 1 cut(s) | 262 |
| BsaI | GGTCTC | 1 cut(s) | 196 |
| BsaJI | CCNNGG | 1 cut(s) | 207 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 257 |
| Bse21I | CCTNAGG | 1 cut(s) | 284 |
| BseCI | ATCGAT | 1 cut(s) | 102 |
| BseDI | CCNNGG | 1 cut(s) | 207 |
| BseGI | GGATG | 1 cut(s) | 439 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 257 |
| BseMII | CTCAG | 1 cut(s) | 471 |
| BseSI | GKGCMC | 1 cut(s) | 529 |
| Bsh1236I | CGCG | 1 cut(s) | 209 |
| BshFI | GGCC | 2 cut(s) | 408, 657 |
| BshVI | ATCGAT | 1 cut(s) | 102 |
| BsiHKAI | GWGCWC | 2 cut(s) | 141, 486 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 257 |
| BsmAI | GTCTC | 2 cut(s) | 196, 662 |
| BsnI | GGCC | 2 cut(s) | 408, 657 |
| Bso31I | GGTCTC | 1 cut(s) | 196 |
| Bsp1286I | GDGCHC | 3 cut(s) | 141, 486, 529 |
| Bsp143I | GATC | 3 cut(s) | 610, 622, 661 |
| BspACI | CCGC | 3 cut(s) | 207, 209, 561 |
| BspANI | GGCC | 2 cut(s) | 408, 657 |
| BspCNI | CTCAG | 1 cut(s) | 472 |
| BspDI | ATCGAT | 1 cut(s) | 102 |
| BspFNI | CGCG | 1 cut(s) | 209 |
| BspHI | TCATGA | 1 cut(s) | 133 |
| BspLI | GGNNCC | 2 cut(s) | 148, 421 |
| BspTNI | GGTCTC | 1 cut(s) | 196 |
| BssECI | CCNNGG | 1 cut(s) | 207 |
| BssMI | GATC | 3 cut(s) | 610, 622, 661 |
| BssNI | GRCGYC | 1 cut(s) | 262 |
| BssSI | CACGAG | 1 cut(s) | 543 |
| Bst2BI | CACGAG | 1 cut(s) | 543 |
| BstACI | GRCGYC | 1 cut(s) | 262 |
| BstDEI | CTNAG | 3 cut(s) | 284, 432, 480 |
| BstDSI | CCRYGG | 1 cut(s) | 207 |
| BstF5I | GGATG | 1 cut(s) | 439 |
| BstFNI | CGCG | 1 cut(s) | 209 |
| BstHHI | GCGC | 1 cut(s) | 248 |
| BstKTI | GATC | 3 cut(s) | 613, 625, 664 |
| BstMAI | GTCTC | 2 cut(s) | 196, 662 |
| BstMBI | GATC | 3 cut(s) | 610, 622, 661 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 458, 569, 590 |
| BstSFI | CTRYAG | 1 cut(s) | 111 |
| BstSLI | GKGCMC | 1 cut(s) | 529 |
| BstUI | CGCG | 1 cut(s) | 209 |
| BstV2I | GAAGAC | 1 cut(s) | 648 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 416 |
| Bsu15I | ATCGAT | 1 cut(s) | 102 |
| Bsu36I | CCTNAGG | 1 cut(s) | 284 |
| BsuI | GTATCC | 1 cut(s) | 283 |
| BsuRI | GGCC | 2 cut(s) | 408, 657 |
| BsuTUI | ATCGAT | 1 cut(s) | 102 |
| BtgI | CCRYGG | 1 cut(s) | 207 |
| BtsCI | GGATG | 1 cut(s) | 439 |
| CciI | TCATGA | 1 cut(s) | 133 |
| CfoI | GCGC | 1 cut(s) | 248 |
| Cfr13I | GGNCC | 1 cut(s) | 308 |
| Cfr42I | CCGCGG | 1 cut(s) | 210 |
| ClaI | ATCGAT | 1 cut(s) | 102 |
| CseI | GACGC | 1 cut(s) | 270 |
| CviAII | CATG | 6 cut(s) | 134, 151, 170, 266, 377, 471 |
| DdeI | CTNAG | 3 cut(s) | 284, 432, 480 |
| DpnI | GATC | 3 cut(s) | 612, 624, 663 |
| DpnII | GATC | 3 cut(s) | 610, 622, 661 |
| DraIII | CACNNNGTG | 1 cut(s) | 601 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 306 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 306 |
| EaeI | YGGCCR | 1 cut(s) | 406 |
| Ecl136II | GAGCTC | 1 cut(s) | 139 |
| Eco24I | GRGCYC | 1 cut(s) | 141 |
| Eco31I | GGTCTC | 1 cut(s) | 196 |
| Eco32I | GATATC | 1 cut(s) | 22 |
| Eco47I | GGWCC | 1 cut(s) | 308 |
| Eco53kI | GAGCTC | 1 cut(s) | 139 |
| Eco57I | CTGAAG | 1 cut(s) | 660 |
| Eco81I | CCTNAGG | 1 cut(s) | 284 |
| EcoICRI | GAGCTC | 1 cut(s) | 139 |
| EcoRV | GATATC | 1 cut(s) | 22 |
| EcoT38I | GRGCYC | 1 cut(s) | 141 |
| FaeI | CATG | 6 cut(s) | 137, 154, 173, 269, 380, 474 |
| FatI | CATG | 6 cut(s) | 133, 150, 169, 265, 376, 470 |
| FauI | CCCGC | 2 cut(s) | 202, 214 |
| Fnu4HI | GCNGC | 1 cut(s) | 561 |
| FokI | GGATG | 1 cut(s) | 426 |
| FriOI | GRGCYC | 1 cut(s) | 141 |
| Fsp4HI | GCNGC | 1 cut(s) | 561 |
| GlaI | GCGC | 1 cut(s) | 247 |
| GluI | GCNGC | 1 cut(s) | 561 |
| HaeIII | GGCC | 2 cut(s) | 408, 657 |
| HgaI | GACGC | 1 cut(s) | 270 |
| HhaI | GCGC | 1 cut(s) | 248 |
| Hin1I | GRCGYC | 1 cut(s) | 262 |
| Hin1II | CATG | 6 cut(s) | 137, 154, 173, 269, 380, 474 |
| Hin6I | GCGC | 1 cut(s) | 246 |
| HinP1I | GCGC | 1 cut(s) | 246 |
| HincII | GTYRAC | 1 cut(s) | 374 |
| HindII | GTYRAC | 1 cut(s) | 374 |
| HinfI | GANTC | 5 cut(s) | 49, 99, 120, 230, 476 |
| HphI | GGTGA | 1 cut(s) | 632 |
| Hpy166II | GTNNAC | 1 cut(s) | 374 |
| Hpy188I | TCNGA | 2 cut(s) | 229, 481 |
| Hpy188III | TCNNGA | 7 cut(s) | 134, 201, 297, 501, 545, 614, 665 |
| Hpy8I | GTNNAC | 1 cut(s) | 374 |
| Hpy99I | CGWCG | 1 cut(s) | 560 |
| HpyAV | CCTTC | 3 cut(s) | 70, 326, 611 |
| HpyCH4IV | ACGT | 1 cut(s) | 301 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 458, 569, 590 |
| HpyF3I | CTNAG | 3 cut(s) | 284, 432, 480 |
| HpySE526I | ACGT | 1 cut(s) | 301 |
| Hsp92I | GRCGYC | 1 cut(s) | 262 |
| Hsp92II | CATG | 6 cut(s) | 137, 154, 173, 269, 380, 474 |
| HspAI | GCGC | 1 cut(s) | 246 |
| KspI | CCGCGG | 1 cut(s) | 210 |
| Kzo9I | GATC | 3 cut(s) | 610, 622, 661 |
| LmnI | GCTCC | 2 cut(s) | 146, 425 |
| LpnPI | CCDG | 4 cut(s) | 99, 282, 501, 639 |
| LweI | GCATC | 1 cut(s) | 439 |
| MaeII | ACGT | 1 cut(s) | 301 |
| MaeIII | GTNAC | 1 cut(s) | 106 |
| MalI | GATC | 3 cut(s) | 612, 624, 663 |
| MboI | GATC | 3 cut(s) | 610, 622, 661 |
| MboII | GAAGA | 2 cut(s) | 199, 653 |
| MhlI | GDGCHC | 3 cut(s) | 141, 486, 529 |
| MlsI | TGGCCA | 1 cut(s) | 408 |
| MluCI | AATT | 3 cut(s) | 5, 196, 235 |
| MluNI | TGGCCA | 1 cut(s) | 408 |
| MlyI | GAGTC | 3 cut(s) | 43, 239, 485 |
| MnlI | CCTC | 5 cut(s) | 39, 251, 382, 386, 474 |
| Mox20I | TGGCCA | 1 cut(s) | 408 |
| MscI | TGGCCA | 1 cut(s) | 408 |
| MslI | CAYNNNNRTG | 5 cut(s) | 29, 182, 414, 444, 489 |
| Msp20I | TGGCCA | 1 cut(s) | 408 |
| MspA1I | CMGCKG | 1 cut(s) | 209 |
| MvnI | CGCG | 1 cut(s) | 209 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 458, 569, 590 |
| NdeII | GATC | 3 cut(s) | 610, 622, 661 |
| NlaIII | CATG | 6 cut(s) | 137, 154, 173, 269, 380, 474 |
| NlaIV | GGNNCC | 2 cut(s) | 148, 421 |
| OliI | CACNNNNGTG | 1 cut(s) | 29 |
| PagI | TCATGA | 1 cut(s) | 133 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 268 |
| PfeI | GAWTC | 2 cut(s) | 99, 120 |
| PkrI | GCNGC | 1 cut(s) | 562 |
| PleI | GAGTC | 3 cut(s) | 43, 238, 484 |
| PpsI | GAGTC | 3 cut(s) | 43, 238, 484 |
| Psp124BI | GAGCTC | 1 cut(s) | 141 |
| PspN4I | GGNNCC | 2 cut(s) | 148, 421 |
| PspPI | GGNCC | 1 cut(s) | 308 |
| RseI | CAYNNNNRTG | 5 cut(s) | 29, 182, 414, 444, 489 |
| SacI | GAGCTC | 1 cut(s) | 141 |
| SacII | CCGCGG | 1 cut(s) | 210 |
| SatI | GCNGC | 1 cut(s) | 561 |
| Sau3AI | GATC | 3 cut(s) | 610, 622, 661 |
| Sau96I | GGNCC | 1 cut(s) | 308 |
| SchI | GAGTC | 3 cut(s) | 43, 239, 485 |
| SduI | GDGCHC | 3 cut(s) | 141, 486, 529 |
| SfaNI | GCATC | 1 cut(s) | 439 |
| SfcI | CTRYAG | 1 cut(s) | 111 |
| Sfr303I | CCGCGG | 1 cut(s) | 210 |
| SgrBI | CCGCGG | 1 cut(s) | 210 |
| SinI | GGWCC | 1 cut(s) | 308 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 29, 182, 414, 444, 489 |
| Sse9I | AATT | 3 cut(s) | 5, 196, 235 |
| SsiI | CCGC | 3 cut(s) | 207, 209, 561 |
| SstI | GAGCTC | 1 cut(s) | 141 |
| TaiI | ACGT | 1 cut(s) | 304 |
| TaqI | TCGA | 4 cut(s) | 97, 102, 200, 502 |
| TasI | AATT | 3 cut(s) | 5, 196, 235 |
| TauI | GCSGC | 1 cut(s) | 563 |
| TfiI | GAWTC | 2 cut(s) | 99, 120 |
| TspDTI | ATGAA | 2 cut(s) | 122, 167 |
| VpaK11BI | GGWCC | 1 cut(s) | 308 |