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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1311 |
| AccB1I | GGYRCC | 2 cut(s) | 1448, 1529 |
| AccII | CGCG | 1 cut(s) | 1157 |
| AccIII | TCCGGA | 4 cut(s) | 217, 696, 741, 893 |
| AciI | CCGC | 9 cut(s) | 158, 544, 552, 560, 682, 834, 958, 1279, 1452 |
| AclI | AACGTT | 1 cut(s) | 1230 |
| AcsI | RAATTY | 1 cut(s) | 1041 |
| AcyI | GRCGYC | 3 cut(s) | 394, 1512, 1530 |
| AfaI | GTAC | 1 cut(s) | 948 |
| AfeI | AGCGCT | 1 cut(s) | 498 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 53, 224, 354, 729, 776, 859, 881, 1180, 1474 |
| AflII | CTTAAG | 1 cut(s) | 1028 |
| AgeI | ACCGGT | 2 cut(s) | 658, 810 |
| AgsI | TTSAA | 4 cut(s) | 1106, 1294, 1428, 1565 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 916 |
| AjiI | CACGTC | 3 cut(s) | 577, 611, 629 |
| AjnI | CCWGG | 1 cut(s) | 91 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1064, 1096 |
| AluBI | AGCT | 7 cut(s) | 535, 923, 941, 1094, 1118, 1198, 1471 |
| AluI | AGCT | 7 cut(s) | 535, 923, 941, 1094, 1118, 1198, 1471 |
| Alw21I | GWGCWC | 1 cut(s) | 1080 |
| Alw26I | GTCTC | 5 cut(s) | 68, 268, 509, 1341, 1414 |
| Aor13HI | TCCGGA | 4 cut(s) | 217, 696, 741, 893 |
| Aor51HI | AGCGCT | 1 cut(s) | 498 |
| ApeKI | GCWGC | 7 cut(s) | 473, 499, 527, 535, 604, 1216, 1544 |
| ApoI | RAATTY | 1 cut(s) | 1041 |
| AsiGI | ACCGGT | 2 cut(s) | 658, 810 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1323 |
| AspA2I | CCTAGG | 1 cut(s) | 1534 |
| AspLEI | GCGC | 3 cut(s) | 499, 1159, 1532 |
| AspS9I | GGNCC | 2 cut(s) | 286, 1006 |
| AsuC2I | CCSGG | 2 cut(s) | 232, 268 |
| AsuHPI | GGTGA | 2 cut(s) | 1535, 1550 |
| AvaII | GGWCC | 1 cut(s) | 286 |
| AvrII | CCTAGG | 1 cut(s) | 1534 |
| BalI | TGGCCA | 3 cut(s) | 175, 334, 1356 |
| BamHI | GGATCC | 3 cut(s) | 214, 227, 263 |
| BanI | GGYRCC | 2 cut(s) | 1448, 1529 |
| BbsI | GAAGAC | 2 cut(s) | 1191, 1394 |
| Bbv12I | GWGCWC | 1 cut(s) | 1080 |
| BbvI | GCAGC | 7 cut(s) | 460, 486, 522, 539, 616, 1228, 1531 |
| BceAI | ACGGC | 1 cut(s) | 486 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 999, 1033 |
| BciT130I | CCWGG | 1 cut(s) | 93 |
| BcnI | CCSGG | 2 cut(s) | 232, 268 |
| BcoDI | GTCTC | 5 cut(s) | 68, 268, 509, 1341, 1414 |
| BfaI | CTAG | 4 cut(s) | 398, 548, 1065, 1535 |
| BfmI | CTRYAG | 4 cut(s) | 200, 924, 942, 961 |
| BfoI | RGCGCY | 2 cut(s) | 500, 1533 |
| BfrI | CTTAAG | 1 cut(s) | 1028 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 331 |
| BlnI | CCTAGG | 1 cut(s) | 1534 |
| BmcAI | AGTACT | 1 cut(s) | 948 |
| Bme1390I | CCNGG | 3 cut(s) | 93, 232, 268 |
| Bme18I | GGWCC | 1 cut(s) | 286 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 916 |
| BmgBI | CACGTC | 3 cut(s) | 577, 611, 629 |
| BmgT120I | GGNCC | 2 cut(s) | 286, 1006 |
| BmiI | GGNNCC | 6 cut(s) | 216, 229, 265, 288, 1450, 1531 |
| BmrFI | CCNGG | 3 cut(s) | 93, 232, 268 |
| BmrI | ACTGGG | 1 cut(s) | 287 |
| BmsI | GCATC | 2 cut(s) | 602, 1531 |
| BmuI | ACTGGG | 1 cut(s) | 287 |
| BpiI | GAAGAC | 2 cut(s) | 1191, 1394 |
| BpmI | CTGGAG | 1 cut(s) | 918 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1472 |
| BpuEI | CTTGAG | 2 cut(s) | 1232, 1569 |
| BpuMI | CCSGG | 2 cut(s) | 232, 268 |
| BsaBI | GATNNNNATC | 3 cut(s) | 24, 219, 1379 |
| BsaHI | GRCGYC | 3 cut(s) | 394, 1512, 1530 |
| BsaJI | CCNNGG | 3 cut(s) | 349, 1503, 1534 |
| BsaWI | WCCGGW | 7 cut(s) | 217, 658, 696, 741, 810, 893, 915 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 916, 946, 1064, 1094 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 53, 224, 354, 729, 776, 859, 881, 1180, 1474 |
| Bse118I | RCCGGY | 5 cut(s) | 354, 638, 658, 790, 810 |
| Bse1I | ACTGG | 5 cut(s) | 176, 282, 597, 935, 1102 |
| Bse3DI | GCAATG | 1 cut(s) | 1271 |
| Bse8I | GATNNNNATC | 3 cut(s) | 24, 219, 1379 |
| BseAI | TCCGGA | 4 cut(s) | 217, 696, 741, 893 |
| BseBI | CCWGG | 1 cut(s) | 93 |
| BseDI | CCNNGG | 3 cut(s) | 349, 1503, 1534 |
| BseGI | GGATG | 3 cut(s) | 593, 1053, 1513 |
| BseJI | GATNNNNATC | 3 cut(s) | 24, 219, 1379 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 53, 224, 354, 729, 776, 859, 881, 1180, 1474 |
| BseMI | GCAATG | 1 cut(s) | 1271 |
| BseMII | CTCAG | 2 cut(s) | 72, 79 |
| BseNI | ACTGG | 5 cut(s) | 176, 282, 597, 935, 1102 |
| BseX3I | CGGCCG | 3 cut(s) | 788, 850, 955 |
| BseXI | GCAGC | 7 cut(s) | 460, 486, 522, 539, 616, 1228, 1531 |
| BsgI | GTGCAG | 1 cut(s) | 1398 |
| Bsh1236I | CGCG | 1 cut(s) | 1157 |
| Bsh1285I | CGRYCG | 4 cut(s) | 51, 791, 853, 958 |
| BshNI | GGYRCC | 2 cut(s) | 1448, 1529 |
| BshTI | ACCGGT | 2 cut(s) | 658, 810 |
| BsiEI | CGRYCG | 4 cut(s) | 51, 791, 853, 958 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1080 |
| BslFI | GGGAC | 2 cut(s) | 83, 1472 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 53, 224, 354, 729, 776, 859, 881, 1180, 1474 |
| BsmAI | GTCTC | 5 cut(s) | 68, 268, 509, 1341, 1414 |
| BsmBI | CGTCTC | 2 cut(s) | 509, 1414 |
| BsmFI | GGGAC | 2 cut(s) | 83, 1472 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1080 |
| Bsp13I | TCCGGA | 4 cut(s) | 217, 696, 741, 893 |
| Bsp19I | CCATGG | 1 cut(s) | 1503 |
| BspACI | CCGC | 9 cut(s) | 158, 544, 552, 560, 682, 834, 958, 1279, 1452 |
| BspCNI | CTCAG | 2 cut(s) | 73, 78 |
| BspEI | TCCGGA | 4 cut(s) | 217, 696, 741, 893 |
| BspFNI | CGCG | 1 cut(s) | 1157 |
| BspHI | TCATGA | 1 cut(s) | 1134 |
| BspLI | GGNNCC | 6 cut(s) | 216, 229, 265, 288, 1450, 1531 |
| BspT107I | GGYRCC | 2 cut(s) | 1448, 1529 |
| BspTI | CTTAAG | 1 cut(s) | 1028 |
| BsrDI | GCAATG | 1 cut(s) | 1271 |
| BsrFI | RCCGGY | 5 cut(s) | 354, 638, 658, 790, 810 |
| BsrI | ACTGG | 5 cut(s) | 176, 282, 597, 935, 1102 |
| BssAI | RCCGGY | 5 cut(s) | 354, 638, 658, 790, 810 |
| BssECI | CCNNGG | 3 cut(s) | 349, 1503, 1534 |
| BssNI | GRCGYC | 3 cut(s) | 394, 1512, 1530 |
| BssT1I | CCWWGG | 3 cut(s) | 349, 1503, 1534 |
| Bst2UI | CCWGG | 1 cut(s) | 93 |
| Bst4CI | ACNGT | 5 cut(s) | 651, 803, 928, 946, 965 |
| BstACI | GRCGYC | 3 cut(s) | 394, 1512, 1530 |
| BstAFI | CTTAAG | 1 cut(s) | 1028 |
| BstC8I | GCNNGC | 7 cut(s) | 356, 591, 636, 686, 838, 1092, 1480 |
| BstDEI | CTNAG | 3 cut(s) | 65, 81, 1472 |
| BstDSI | CCRYGG | 1 cut(s) | 1503 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1178 |
| BstF5I | GGATG | 3 cut(s) | 593, 1053, 1513 |
| BstFNI | CGCG | 1 cut(s) | 1157 |
| BstH2I | RGCGCY | 2 cut(s) | 500, 1533 |
| BstHHI | GCGC | 3 cut(s) | 499, 1159, 1532 |
| BstMAI | GTCTC | 5 cut(s) | 68, 268, 509, 1341, 1414 |
| BstMCI | CGRYCG | 4 cut(s) | 51, 791, 853, 958 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 331, 579, 613, 622, 631, 1115, 1550 |
| BstNI | CCWGG | 1 cut(s) | 93 |
| BstSCI | CCNGG | 3 cut(s) | 91, 230, 266 |
| BstSFI | CTRYAG | 4 cut(s) | 200, 924, 942, 961 |
| BstUI | CGCG | 1 cut(s) | 1157 |
| BstV1I | GCAGC | 7 cut(s) | 460, 486, 522, 539, 616, 1228, 1531 |
| BstV2I | GAAGAC | 2 cut(s) | 1191, 1394 |
| BstX2I | RGATCY | 5 cut(s) | 214, 220, 227, 256, 263 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 297 |
| BstYI | RGATCY | 5 cut(s) | 214, 220, 227, 256, 263 |
| BstZI | CGGCCG | 3 cut(s) | 788, 850, 955 |
| BtgI | CCRYGG | 1 cut(s) | 1503 |
| BtrI | CACGTC | 3 cut(s) | 577, 611, 629 |
| BtsCI | GGATG | 3 cut(s) | 593, 1053, 1513 |
| BtsIMutI | CAGTG | 1 cut(s) | 1415 |
| Cac8I | GCNNGC | 7 cut(s) | 356, 591, 636, 686, 838, 1092, 1480 |
| CciI | TCATGA | 1 cut(s) | 1134 |
| CfoI | GCGC | 3 cut(s) | 499, 1159, 1532 |
| Cfr10I | RCCGGY | 5 cut(s) | 354, 638, 658, 790, 810 |
| Cfr13I | GGNCC | 2 cut(s) | 286, 1006 |
| CseI | GACGC | 4 cut(s) | 402, 491, 1163, 1501 |
| Csp6I | GTAC | 1 cut(s) | 947 |
| CspAI | ACCGGT | 2 cut(s) | 658, 810 |
| CviAII | CATG | 9 cut(s) | 115, 151, 330, 336, 1135, 1147, 1496, 1504, 1520 |
| CviQI | GTAC | 1 cut(s) | 947 |
| DdeI | CTNAG | 3 cut(s) | 65, 81, 1472 |
| DinI | GGCGCC | 1 cut(s) | 1531 |
| DriI | GACNNNNNGTC | 1 cut(s) | 916 |
| EagI | CGGCCG | 3 cut(s) | 788, 850, 955 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 916 |
| EclXI | CGGCCG | 3 cut(s) | 788, 850, 955 |
| Eco130I | CCWWGG | 3 cut(s) | 349, 1503, 1534 |
| Eco47I | GGWCC | 1 cut(s) | 286 |
| Eco47III | AGCGCT | 1 cut(s) | 498 |
| Eco52I | CGGCCG | 3 cut(s) | 788, 850, 955 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1178 |
| EcoRI | GAATTC | 1 cut(s) | 1041 |
| EcoRII | CCWGG | 1 cut(s) | 91 |
| EcoT14I | CCWWGG | 3 cut(s) | 349, 1503, 1534 |
| EgeI | GGCGCC | 1 cut(s) | 1531 |
| EheI | GGCGCC | 1 cut(s) | 1531 |
| ErhI | CCWWGG | 3 cut(s) | 349, 1503, 1534 |
| Esp3I | CGTCTC | 2 cut(s) | 509, 1414 |
| FaeI | CATG | 9 cut(s) | 118, 154, 333, 339, 1138, 1150, 1499, 1507, 1523 |
| FaqI | GGGAC | 2 cut(s) | 83, 1472 |
| FatI | CATG | 9 cut(s) | 114, 150, 329, 335, 1134, 1146, 1495, 1503, 1519 |
| FokI | GGATG | 3 cut(s) | 580, 1040, 1520 |
| FspBI | CTAG | 4 cut(s) | 398, 548, 1065, 1535 |
| GlaI | GCGC | 3 cut(s) | 498, 1158, 1531 |
| GsuI | CTGGAG | 1 cut(s) | 918 |
| HaeII | RGCGCY | 2 cut(s) | 500, 1533 |
| HgaI | GACGC | 4 cut(s) | 402, 491, 1163, 1501 |
| HhaI | GCGC | 3 cut(s) | 499, 1159, 1532 |
| Hin1I | GRCGYC | 3 cut(s) | 394, 1512, 1530 |
| Hin1II | CATG | 9 cut(s) | 118, 154, 333, 339, 1138, 1150, 1499, 1507, 1523 |
| Hin6I | GCGC | 3 cut(s) | 497, 1157, 1530 |
| HinP1I | GCGC | 3 cut(s) | 497, 1157, 1530 |
| HincII | GTYRAC | 8 cut(s) | 644, 654, 664, 676, 796, 806, 816, 828 |
| HindII | GTYRAC | 8 cut(s) | 644, 654, 664, 676, 796, 806, 816, 828 |
| HinfI | GANTC | 6 cut(s) | 61, 140, 183, 1238, 1390, 1499 |
| HphI | GGTGA | 2 cut(s) | 1535, 1550 |
| Hpy99I | CGWCG | 2 cut(s) | 396, 981 |
| HpyAV | CCTTC | 3 cut(s) | 199, 393, 1411 |
| HpyCH4III | ACNGT | 5 cut(s) | 651, 803, 928, 946, 965 |
| HpyCH4IV | ACGT | 5 cut(s) | 576, 610, 628, 1074, 1230 |
| HpyCH4V | TGCA | 4 cut(s) | 476, 1264, 1415, 1547 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 331, 579, 613, 622, 631, 1115, 1550 |
| HpyF3I | CTNAG | 3 cut(s) | 65, 81, 1472 |
| HpySE526I | ACGT | 5 cut(s) | 576, 610, 628, 1074, 1230 |
| Hsp92I | GRCGYC | 3 cut(s) | 394, 1512, 1530 |
| Hsp92II | CATG | 9 cut(s) | 118, 154, 333, 339, 1138, 1150, 1499, 1507, 1523 |
| HspAI | GCGC | 3 cut(s) | 497, 1157, 1530 |
| KasI | GGCGCC | 1 cut(s) | 1529 |
| Kpn2I | TCCGGA | 4 cut(s) | 217, 696, 741, 893 |
| KroI | GCCGGC | 1 cut(s) | 354 |
| KroNI | GCCGGC | 1 cut(s) | 356 |
| LmnI | GCTCC | 1 cut(s) | 1164 |
| Lsp1109I | GCAGC | 7 cut(s) | 460, 486, 522, 539, 616, 1228, 1531 |
| LweI | GCATC | 2 cut(s) | 602, 1531 |
| MaeI | CTAG | 4 cut(s) | 398, 548, 1065, 1535 |
| MaeII | ACGT | 5 cut(s) | 576, 610, 628, 1074, 1230 |
| MaeIII | GTNAC | 3 cut(s) | 928, 965, 1235 |
| MboII | GAAGA | 3 cut(s) | 1196, 1316, 1399 |
| MflI | RGATCY | 5 cut(s) | 214, 220, 227, 256, 263 |
| MhlI | GDGCHC | 1 cut(s) | 1080 |
| MlsI | TGGCCA | 3 cut(s) | 175, 334, 1356 |
| MluCI | AATT | 6 cut(s) | 291, 413, 459, 1041, 1128, 1432 |
| MluNI | TGGCCA | 3 cut(s) | 175, 334, 1356 |
| Mly113I | GGCGCC | 1 cut(s) | 1530 |
| MlyI | GAGTC | 4 cut(s) | 70, 1232, 1384, 1493 |
| MmeI | TCCRAC | 6 cut(s) | 38, 404, 415, 743, 895, 1012 |
| MnlI | CCTC | 7 cut(s) | 46, 678, 830, 1174, 1184, 1286, 1465 |
| Mox20I | TGGCCA | 3 cut(s) | 175, 334, 1356 |
| MroI | TCCGGA | 4 cut(s) | 217, 696, 741, 893 |
| MroNI | GCCGGC | 1 cut(s) | 354 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1323 |
| MscI | TGGCCA | 3 cut(s) | 175, 334, 1356 |
| MseI | TTAA | 2 cut(s) | 999, 1029 |
| MslI | CAYNNNNRTG | 4 cut(s) | 334, 1149, 1521, 1524 |
| Msp20I | TGGCCA | 3 cut(s) | 175, 334, 1356 |
| MspA1I | CMGCKG | 2 cut(s) | 684, 836 |
| MspCI | CTTAAG | 1 cut(s) | 1028 |
| MspR9I | CCNGG | 3 cut(s) | 93, 232, 268 |
| MvaI | CCWGG | 1 cut(s) | 93 |
| MvnI | CGCG | 1 cut(s) | 1157 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 331, 579, 613, 622, 631, 1115, 1550 |
| NaeI | GCCGGC | 1 cut(s) | 356 |
| NarI | GGCGCC | 1 cut(s) | 1530 |
| NciI | CCSGG | 2 cut(s) | 232, 268 |
| NcoI | CCATGG | 1 cut(s) | 1503 |
| NgoMIV | GCCGGC | 1 cut(s) | 354 |
| NlaIII | CATG | 9 cut(s) | 118, 154, 333, 339, 1138, 1150, 1499, 1507, 1523 |
| NlaIV | GGNNCC | 6 cut(s) | 216, 229, 265, 288, 1450, 1531 |
| NmeAIII | GCCGAG | 3 cut(s) | 556, 564, 1034 |
| NmuCI | GTSAC | 1 cut(s) | 1235 |
| PagI | TCATGA | 1 cut(s) | 1134 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 985 |
| PdiI | GCCGGC | 1 cut(s) | 356 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1323 |
| PfeI | GAWTC | 2 cut(s) | 140, 183 |
| PinAI | ACCGGT | 2 cut(s) | 658, 810 |
| Ple19I | CGATCG | 1 cut(s) | 51 |
| PleI | GAGTC | 4 cut(s) | 69, 1232, 1384, 1493 |
| PluTI | GGCGCC | 1 cut(s) | 1533 |
| PpsI | GAGTC | 4 cut(s) | 69, 1232, 1384, 1493 |
| PsiI | TTATAA | 1 cut(s) | 1311 |
| Psp1406I | AACGTT | 1 cut(s) | 1230 |
| Psp6I | CCWGG | 1 cut(s) | 91 |
| PspGI | CCWGG | 1 cut(s) | 91 |
| PspN4I | GGNNCC | 6 cut(s) | 216, 229, 265, 288, 1450, 1531 |
| PspPI | GGNCC | 2 cut(s) | 286, 1006 |
| PsuI | RGATCY | 5 cut(s) | 214, 220, 227, 256, 263 |
| PvuI | CGATCG | 1 cut(s) | 51 |
| RsaI | GTAC | 1 cut(s) | 948 |
| RsaNI | GTAC | 1 cut(s) | 947 |
| RseI | CAYNNNNRTG | 4 cut(s) | 334, 1149, 1521, 1524 |
| SaqAI | TTAA | 2 cut(s) | 999, 1029 |
| Sau96I | GGNCC | 2 cut(s) | 286, 1006 |
| ScaI | AGTACT | 1 cut(s) | 948 |
| SchI | GAGTC | 4 cut(s) | 70, 1232, 1384, 1493 |
| ScrFI | CCNGG | 3 cut(s) | 93, 232, 268 |
| SduI | GDGCHC | 1 cut(s) | 1080 |
| SfaNI | GCATC | 2 cut(s) | 602, 1531 |
| SfcI | CTRYAG | 4 cut(s) | 200, 924, 942, 961 |
| SfoI | GGCGCC | 1 cut(s) | 1531 |
| SinI | GGWCC | 1 cut(s) | 286 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 334, 1149, 1521, 1524 |
| SmlI | CTYRAG | 3 cut(s) | 1028, 1211, 1584 |
| SmoI | CTYRAG | 3 cut(s) | 1028, 1211, 1584 |
| Sse9I | AATT | 6 cut(s) | 291, 413, 459, 1041, 1128, 1432 |
| SsiI | CCGC | 9 cut(s) | 158, 544, 552, 560, 682, 834, 958, 1279, 1452 |
| SspDI | GGCGCC | 1 cut(s) | 1529 |
| SspMI | CTAG | 4 cut(s) | 398, 548, 1065, 1535 |
| StyD4I | CCNGG | 3 cut(s) | 91, 230, 266 |
| StyI | CCWWGG | 3 cut(s) | 349, 1503, 1534 |
| TaaI | ACNGT | 5 cut(s) | 651, 803, 928, 946, 965 |
| TaiI | ACGT | 5 cut(s) | 579, 613, 631, 1077, 1233 |
| TaqI | TCGA | 6 cut(s) | 28, 51, 125, 361, 431, 1383 |
| TasI | AATT | 6 cut(s) | 291, 413, 459, 1041, 1128, 1432 |
| TatI | WGTACW | 1 cut(s) | 946 |
| TauI | GCSGC | 4 cut(s) | 546, 554, 562, 960 |
| TfiI | GAWTC | 2 cut(s) | 140, 183 |
| Tru1I | TTAA | 2 cut(s) | 999, 1029 |
| Tru9I | TTAA | 2 cut(s) | 999, 1029 |
| TscAI | CASTG | 1 cut(s) | 1422 |
| TseFI | GTSAC | 1 cut(s) | 1235 |
| TseI | GCWGC | 7 cut(s) | 473, 499, 527, 535, 604, 1216, 1544 |
| Tsp45I | GTSAC | 1 cut(s) | 1235 |
| TspDTI | ATGAA | 3 cut(s) | 375, 1163, 1182 |
| TspGWI | ACGGA | 3 cut(s) | 112, 470, 1447 |
| TspRI | CASTG | 1 cut(s) | 1422 |
| Vha464I | CTTAAG | 1 cut(s) | 1028 |
| VpaK11BI | GGWCC | 1 cut(s) | 286 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1178 |
| XapI | RAATTY | 1 cut(s) | 1041 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 1197, 1475, 1523 |
| XmaJI | CCTAGG | 1 cut(s) | 1534 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1323 |
| XspI | CTAG | 4 cut(s) | 398, 548, 1065, 1535 |
| ZrmI | AGTACT | 1 cut(s) | 948 |