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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 513 |
| AccB1I | GGYRCC | 3 cut(s) | 468, 578, 659 |
| AccII | CGCG | 1 cut(s) | 453 |
| AccIII | TCCGGA | 1 cut(s) | 433 |
| AciI | CCGC | 3 cut(s) | 145, 547, 701 |
| AclWI | GGATC | 1 cut(s) | 405 |
| AcyI | GRCGYC | 3 cut(s) | 630, 642, 660 |
| AfaI | GTAC | 1 cut(s) | 32 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 604, 608 |
| AgsI | TTSAA | 2 cut(s) | 160, 695 |
| AjnI | CCWGG | 1 cut(s) | 601 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 72, 104 |
| AluBI | AGCT | 2 cut(s) | 346, 356 |
| AluI | AGCT | 2 cut(s) | 346, 356 |
| Alw21I | GWGCWC | 1 cut(s) | 429 |
| Alw26I | GTCTC | 1 cut(s) | 280 |
| AlwI | GGATC | 1 cut(s) | 405 |
| Aor13HI | TCCGGA | 1 cut(s) | 433 |
| AoxI | GGCC | 1 cut(s) | 711 |
| ApeKI | GCWGC | 1 cut(s) | 674 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 189 |
| AspA2I | CCTAGG | 1 cut(s) | 664 |
| AspLEI | GCGC | 2 cut(s) | 455, 662 |
| AspS9I | GGNCC | 1 cut(s) | 515 |
| AsuHPI | GGTGA | 3 cut(s) | 665, 673, 680 |
| AsuII | TTCGAA | 1 cut(s) | 193 |
| AvaII | GGWCC | 1 cut(s) | 515 |
| AvrII | CCTAGG | 1 cut(s) | 664 |
| BaeGI | GKGCMC | 2 cut(s) | 471, 581 |
| BanI | GGYRCC | 3 cut(s) | 468, 578, 659 |
| BbsI | GAAGAC | 1 cut(s) | 260 |
| Bbv12I | GWGCWC | 1 cut(s) | 429 |
| BbvI | GCAGC | 1 cut(s) | 661 |
| BccI | CCATC | 5 cut(s) | 126, 280, 632, 650, 654 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 299, 333 |
| BciT130I | CCWGG | 1 cut(s) | 603 |
| BciVI | GTATCC | 1 cut(s) | 490 |
| BcoDI | GTCTC | 1 cut(s) | 280 |
| BfaI | CTAG | 2 cut(s) | 122, 665 |
| BfmI | CTRYAG | 1 cut(s) | 318 |
| BfoI | RGCGCY | 1 cut(s) | 663 |
| BfuI | GTATCC | 1 cut(s) | 490 |
| BisI | GCNGC | 1 cut(s) | 675 |
| BlnI | CCTAGG | 1 cut(s) | 664 |
| BlsI | GCNGC | 1 cut(s) | 676 |
| Bme1390I | CCNGG | 1 cut(s) | 603 |
| Bme18I | GGWCC | 1 cut(s) | 515 |
| BmgT120I | GGNCC | 1 cut(s) | 515 |
| BmiI | GGNNCC | 4 cut(s) | 470, 568, 580, 661 |
| BmrFI | CCNGG | 1 cut(s) | 603 |
| BmsI | GCATC | 2 cut(s) | 226, 661 |
| BpiI | GAAGAC | 1 cut(s) | 260 |
| BpmI | CTGGAG | 1 cut(s) | 11 |
| Bpu10I | CCTNAGC | 1 cut(s) | 708 |
| Bpu14I | TTCGAA | 1 cut(s) | 193 |
| Bsa29I | ATCGAT | 1 cut(s) | 309 |
| BsaHI | GRCGYC | 3 cut(s) | 630, 642, 660 |
| BsaJI | CCNNGG | 4 cut(s) | 414, 602, 633, 664 |
| BsaWI | WCCGGW | 1 cut(s) | 433 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 604, 608 |
| Bse1I | ACTGG | 1 cut(s) | 28 |
| BseAI | TCCGGA | 1 cut(s) | 433 |
| BseBI | CCWGG | 1 cut(s) | 603 |
| BseCI | ATCGAT | 1 cut(s) | 309 |
| BseDI | CCNNGG | 4 cut(s) | 414, 602, 633, 664 |
| BseGI | GGATG | 3 cut(s) | 22, 384, 643 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 604, 608 |
| BseNI | ACTGG | 1 cut(s) | 28 |
| BseSI | GKGCMC | 2 cut(s) | 471, 581 |
| BseXI | GCAGC | 1 cut(s) | 661 |
| Bsh1236I | CGCG | 1 cut(s) | 453 |
| BshFI | GGCC | 1 cut(s) | 713 |
| BshNI | GGYRCC | 3 cut(s) | 468, 578, 659 |
| BshVI | ATCGAT | 1 cut(s) | 309 |
| BsiHKAI | GWGCWC | 1 cut(s) | 429 |
| BsiSI | CCGG | 1 cut(s) | 434 |
| BslFI | GGGAC | 1 cut(s) | 602 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 604, 608 |
| BsmAI | GTCTC | 1 cut(s) | 280 |
| BsmBI | CGTCTC | 1 cut(s) | 280 |
| BsmFI | GGGAC | 1 cut(s) | 602 |
| BsnI | GGCC | 1 cut(s) | 713 |
| Bsp119I | TTCGAA | 1 cut(s) | 193 |
| Bsp1286I | GDGCHC | 3 cut(s) | 429, 471, 581 |
| Bsp13I | TCCGGA | 1 cut(s) | 433 |
| Bsp143I | GATC | 3 cut(s) | 228, 327, 410 |
| Bsp19I | CCATGG | 2 cut(s) | 414, 633 |
| BspACI | CCGC | 3 cut(s) | 145, 547, 701 |
| BspANI | GGCC | 1 cut(s) | 713 |
| BspDI | ATCGAT | 1 cut(s) | 309 |
| BspEI | TCCGGA | 1 cut(s) | 433 |
| BspFNI | CGCG | 1 cut(s) | 453 |
| BspHI | TCATGA | 1 cut(s) | 340 |
| BspLI | GGNNCC | 4 cut(s) | 470, 568, 580, 661 |
| BspMAI | CTGCAG | 1 cut(s) | 322 |
| BspPI | GGATC | 1 cut(s) | 405 |
| BspT104I | TTCGAA | 1 cut(s) | 193 |
| BspT107I | GGYRCC | 3 cut(s) | 468, 578, 659 |
| BsrI | ACTGG | 1 cut(s) | 28 |
| BssECI | CCNNGG | 4 cut(s) | 414, 602, 633, 664 |
| BssMI | GATC | 3 cut(s) | 228, 327, 410 |
| BssNI | GRCGYC | 3 cut(s) | 630, 642, 660 |
| BssT1I | CCWWGG | 3 cut(s) | 414, 633, 664 |
| Bst2UI | CCWGG | 1 cut(s) | 603 |
| Bst6I | CTCTTC | 1 cut(s) | 567 |
| BstACI | GRCGYC | 3 cut(s) | 630, 642, 660 |
| BstBI | TTCGAA | 1 cut(s) | 193 |
| BstC8I | GCNNGC | 1 cut(s) | 610 |
| BstDEI | CTNAG | 3 cut(s) | 459, 491, 708 |
| BstDSI | CCRYGG | 2 cut(s) | 414, 633 |
| BstEII | GGTNACC | 1 cut(s) | 542 |
| BstF5I | GGATG | 3 cut(s) | 22, 384, 643 |
| BstFNI | CGCG | 1 cut(s) | 453 |
| BstH2I | RGCGCY | 1 cut(s) | 663 |
| BstHHI | GCGC | 2 cut(s) | 455, 662 |
| BstKTI | GATC | 3 cut(s) | 231, 330, 413 |
| BstMAI | GTCTC | 1 cut(s) | 280 |
| BstMBI | GATC | 3 cut(s) | 228, 327, 410 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 475 |
| BstNI | CCWGG | 1 cut(s) | 603 |
| BstPI | GGTNACC | 1 cut(s) | 542 |
| BstSCI | CCNGG | 1 cut(s) | 601 |
| BstSFI | CTRYAG | 1 cut(s) | 318 |
| BstSLI | GKGCMC | 2 cut(s) | 471, 581 |
| BstUI | CGCG | 1 cut(s) | 453 |
| BstV1I | GCAGC | 1 cut(s) | 661 |
| BstV2I | GAAGAC | 1 cut(s) | 260 |
| BstX2I | RGATCY | 1 cut(s) | 410 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 602 |
| BstYI | RGATCY | 1 cut(s) | 410 |
| Bsu15I | ATCGAT | 1 cut(s) | 309 |
| BsuI | GTATCC | 1 cut(s) | 490 |
| BsuRI | GGCC | 1 cut(s) | 713 |
| BsuTUI | ATCGAT | 1 cut(s) | 309 |
| BtgI | CCRYGG | 2 cut(s) | 414, 633 |
| BtgZI | GCGATG | 1 cut(s) | 254 |
| BtsCI | GGATG | 3 cut(s) | 22, 384, 643 |
| Cac8I | GCNNGC | 1 cut(s) | 610 |
| CciI | TCATGA | 1 cut(s) | 340 |
| CfoI | GCGC | 2 cut(s) | 455, 662 |
| Cfr13I | GGNCC | 1 cut(s) | 515 |
| ClaI | ATCGAT | 1 cut(s) | 309 |
| CseI | GACGC | 2 cut(s) | 631, 638 |
| Csp6I | GTAC | 1 cut(s) | 31 |
| CviAII | CATG | 5 cut(s) | 341, 377, 415, 634, 650 |
| CviJI | RGCY | 6 cut(s) | 64, 141, 346, 356, 608, 713 |
| CviKI_1 | RGCY | 6 cut(s) | 64, 141, 346, 356, 608, 713 |
| CviQI | GTAC | 1 cut(s) | 31 |
| DdeI | CTNAG | 3 cut(s) | 459, 491, 708 |
| DinI | GGCGCC | 1 cut(s) | 661 |
| DpnI | GATC | 3 cut(s) | 230, 329, 412 |
| DpnII | GATC | 3 cut(s) | 228, 327, 410 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 513 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 513 |
| Eam1104I | CTCTTC | 1 cut(s) | 567 |
| EarI | CTCTTC | 1 cut(s) | 567 |
| Eco130I | CCWWGG | 3 cut(s) | 414, 633, 664 |
| Eco147I | AGGCCT | 1 cut(s) | 713 |
| Eco47I | GGWCC | 1 cut(s) | 515 |
| Eco91I | GGTNACC | 1 cut(s) | 542 |
| EcoO65I | GGTNACC | 1 cut(s) | 542 |
| EcoRII | CCWGG | 1 cut(s) | 601 |
| EcoT14I | CCWWGG | 3 cut(s) | 414, 633, 664 |
| EgeI | GGCGCC | 1 cut(s) | 661 |
| EheI | GGCGCC | 1 cut(s) | 661 |
| ErhI | CCWWGG | 3 cut(s) | 414, 633, 664 |
| Esp3I | CGTCTC | 1 cut(s) | 280 |
| FaeI | CATG | 5 cut(s) | 344, 380, 418, 637, 653 |
| FaqI | GGGAC | 1 cut(s) | 602 |
| FatI | CATG | 5 cut(s) | 340, 376, 414, 633, 649 |
| FauNDI | CATATG | 1 cut(s) | 12 |
| Fnu4HI | GCNGC | 1 cut(s) | 675 |
| FokI | GGATG | 3 cut(s) | 29, 371, 650 |
| Fsp4HI | GCNGC | 1 cut(s) | 675 |
| FspBI | CTAG | 2 cut(s) | 122, 665 |
| GlaI | GCGC | 2 cut(s) | 454, 661 |
| GluI | GCNGC | 1 cut(s) | 675 |
| GsuI | CTGGAG | 1 cut(s) | 11 |
| HaeII | RGCGCY | 1 cut(s) | 663 |
| HaeIII | GGCC | 1 cut(s) | 713 |
| HapII | CCGG | 1 cut(s) | 434 |
| HgaI | GACGC | 2 cut(s) | 631, 638 |
| HhaI | GCGC | 2 cut(s) | 455, 662 |
| Hin1I | GRCGYC | 3 cut(s) | 630, 642, 660 |
| Hin1II | CATG | 5 cut(s) | 344, 380, 418, 637, 653 |
| Hin6I | GCGC | 2 cut(s) | 453, 660 |
| HinP1I | GCGC | 2 cut(s) | 453, 660 |
| HinfI | GANTC | 6 cut(s) | 4, 20, 104, 256, 306, 437 |
| HpaII | CCGG | 1 cut(s) | 434 |
| HphI | GGTGA | 3 cut(s) | 665, 673, 680 |
| Hpy166II | GTNNAC | 1 cut(s) | 592 |
| Hpy188I | TCNGA | 1 cut(s) | 184 |
| Hpy188III | TCNNGA | 6 cut(s) | 116, 170, 341, 408, 434, 504 |
| Hpy8I | GTNNAC | 1 cut(s) | 592 |
| HpyAV | CCTTC | 3 cut(s) | 54, 277, 533 |
| HpyCH4IV | ACGT | 1 cut(s) | 508 |
| HpyCH4V | TGCA | 3 cut(s) | 281, 320, 677 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 475 |
| HpyF3I | CTNAG | 3 cut(s) | 459, 491, 708 |
| HpySE526I | ACGT | 1 cut(s) | 508 |
| Hsp92I | GRCGYC | 3 cut(s) | 630, 642, 660 |
| Hsp92II | CATG | 5 cut(s) | 344, 380, 418, 637, 653 |
| HspAI | GCGC | 2 cut(s) | 453, 660 |
| KasI | GGCGCC | 1 cut(s) | 659 |
| Kpn2I | TCCGGA | 1 cut(s) | 433 |
| Kzo9I | GATC | 3 cut(s) | 228, 327, 410 |
| LmnI | GCTCC | 1 cut(s) | 353 |
| Lsp1109I | GCAGC | 1 cut(s) | 661 |
| LweI | GCATC | 2 cut(s) | 226, 661 |
| MaeI | CTAG | 2 cut(s) | 122, 665 |
| MaeII | ACGT | 1 cut(s) | 508 |
| MaeIII | GTNAC | 3 cut(s) | 101, 313, 542 |
| MalI | GATC | 3 cut(s) | 230, 329, 412 |
| MboI | GATC | 3 cut(s) | 228, 327, 410 |
| MboII | GAAGA | 4 cut(s) | 92, 265, 406, 584 |
| MflI | RGATCY | 1 cut(s) | 410 |
| MhlI | GDGCHC | 3 cut(s) | 429, 471, 581 |
| MluCI | AATT | 4 cut(s) | 195, 212, 403, 442 |
| Mly113I | GGCGCC | 1 cut(s) | 660 |
| MlyI | GAGTC | 2 cut(s) | 98, 250 |
| MnlI | CCTC | 5 cut(s) | 152, 458, 466, 568, 595 |
| MroI | TCCGGA | 1 cut(s) | 433 |
| MroXI | GAANNNNTTC | 1 cut(s) | 189 |
| MseI | TTAA | 3 cut(s) | 198, 206, 294 |
| MslI | CAYNNNNRTG | 4 cut(s) | 15, 389, 651, 654 |
| MspI | CCGG | 1 cut(s) | 434 |
| MspR9I | CCNGG | 1 cut(s) | 603 |
| MvaI | CCWGG | 1 cut(s) | 603 |
| MvnI | CGCG | 1 cut(s) | 453 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 475 |
| NarI | GGCGCC | 1 cut(s) | 660 |
| NcoI | CCATGG | 2 cut(s) | 414, 633 |
| NdeI | CATATG | 1 cut(s) | 12 |
| NdeII | GATC | 3 cut(s) | 228, 327, 410 |
| NlaIII | CATG | 5 cut(s) | 344, 380, 418, 637, 653 |
| NlaIV | GGNNCC | 4 cut(s) | 470, 568, 580, 661 |
| NmuCI | GTSAC | 1 cut(s) | 101 |
| NspV | TTCGAA | 1 cut(s) | 193 |
| PagI | TCATGA | 1 cut(s) | 340 |
| PceI | AGGCCT | 1 cut(s) | 713 |
| PdmI | GAANNNNTTC | 1 cut(s) | 189 |
| PfeI | GAWTC | 3 cut(s) | 20, 306, 437 |
| PkrI | GCNGC | 1 cut(s) | 676 |
| PleI | GAGTC | 2 cut(s) | 98, 250 |
| PluTI | GGCGCC | 1 cut(s) | 663 |
| PpsI | GAGTC | 2 cut(s) | 98, 250 |
| Psp6I | CCWGG | 1 cut(s) | 601 |
| PspEI | GGTNACC | 1 cut(s) | 542 |
| PspGI | CCWGG | 1 cut(s) | 601 |
| PspN4I | GGNNCC | 4 cut(s) | 470, 568, 580, 661 |
| PspPI | GGNCC | 1 cut(s) | 515 |
| PstI | CTGCAG | 1 cut(s) | 322 |
| PsuI | RGATCY | 1 cut(s) | 410 |
| RsaI | GTAC | 1 cut(s) | 32 |
| RsaNI | GTAC | 1 cut(s) | 31 |
| RseI | CAYNNNNRTG | 4 cut(s) | 15, 389, 651, 654 |
| SaqAI | TTAA | 3 cut(s) | 198, 206, 294 |
| SatI | GCNGC | 1 cut(s) | 675 |
| Sau3AI | GATC | 3 cut(s) | 228, 327, 410 |
| Sau96I | GGNCC | 1 cut(s) | 515 |
| SchI | GAGTC | 2 cut(s) | 98, 250 |
| ScrFI | CCNGG | 1 cut(s) | 603 |
| SduI | GDGCHC | 3 cut(s) | 429, 471, 581 |
| SetI | ASST | 9 cut(s) | 123, 269, 348, 358, 511, 544, 587, 604, 670 |
| SfaNI | GCATC | 2 cut(s) | 226, 661 |
| SfcI | CTRYAG | 1 cut(s) | 318 |
| SfoI | GGCGCC | 1 cut(s) | 661 |
| SfuI | TTCGAA | 1 cut(s) | 193 |
| SinI | GGWCC | 1 cut(s) | 515 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 15, 389, 651, 654 |
| Sse9I | AATT | 4 cut(s) | 195, 212, 403, 442 |
| SseBI | AGGCCT | 1 cut(s) | 713 |
| SsiI | CCGC | 3 cut(s) | 145, 547, 701 |
| SspDI | GGCGCC | 1 cut(s) | 659 |
| SspMI | CTAG | 2 cut(s) | 122, 665 |
| StuI | AGGCCT | 1 cut(s) | 713 |
| StyD4I | CCNGG | 1 cut(s) | 601 |
| StyI | CCWWGG | 3 cut(s) | 414, 633, 664 |
| TaiI | ACGT | 1 cut(s) | 511 |
| TaqI | TCGA | 5 cut(s) | 78, 193, 304, 309, 407 |
| TasI | AATT | 4 cut(s) | 195, 212, 403, 442 |
| TfiI | GAWTC | 3 cut(s) | 20, 306, 437 |
| Tru1I | TTAA | 3 cut(s) | 198, 206, 294 |
| Tru9I | TTAA | 3 cut(s) | 198, 206, 294 |
| TseFI | GTSAC | 1 cut(s) | 101 |
| TseI | GCWGC | 1 cut(s) | 674 |
| Tsp45I | GTSAC | 1 cut(s) | 101 |
| TspDTI | ATGAA | 4 cut(s) | 56, 60, 329, 374 |
| TspGWI | ACGGA | 2 cut(s) | 89, 579 |
| VpaK11BI | GGWCC | 1 cut(s) | 515 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 599, 605, 653 |
| XmaJI | CCTAGG | 1 cut(s) | 664 |
| XmnI | GAANNNNTTC | 1 cut(s) | 189 |
| XspI | CTAG | 2 cut(s) | 122, 665 |